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Volumn 167, Issue 1, 2004, Pages 471-483

Comparative population genetics of the panicoid grasses: Sequence polymorphism, linkage disequilibrium and selection in a diverse sample of Sorghum bicolor

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPARATIVE POPULATION GENETICS; CONTROLLED STUDY; GENE LINKAGE DISEQUILIBRIUM; GENE LOCUS; GENE MAPPING; GENE SEQUENCE; GENE TARGETING; GENETIC ASSOCIATION; GENETIC POLYMORPHISM; GENETIC SELECTION; GENETIC VARIABILITY; GRASS; INBREEDING; MAIZE; MATING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLLINATION; POPULATION GENETICS; POPULATION SIZE; PRIORITY JOURNAL; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; RISK FACTOR; SORGHUM; SORGHUM BICOLOR; SPECIES DIFFERENTIATION; UNINDEXED SEQUENCE;

EID: 1842465830     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.167.1.471     Document Type: Article
Times cited : (105)

References (56)
  • 1
    • 0035151437 scopus 로고    scopus 로고
    • Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana
    • AGUADÉ, M., 2001 Nucleotide sequence variation at two genes of the phenylpropanoid pathway, the FAH1 and F3H genes, in Arabidopsis thaliana. Mol. Biol. Evol. 18: 1-9.
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1-9
    • Aguadé, M.1
  • 2
    • 0000194526 scopus 로고
    • Patterns of allozyme variation in cultivated and wild Sorghum bicolor
    • ALDRICH, P. R., J. DOEBLEY, K. F. SCHERTZ and A. STEC, 1992 Patterns of allozyme variation in cultivated and wild Sorghum bicolor. Theor. Appl. Genet. 85: 451-460.
    • (1992) Theor. Appl. Genet. , vol.85 , pp. 451-460
    • Aldrich, P.R.1    Doebley, J.2    Schertz, K.F.3    Stec, A.4
  • 3
    • 0034850732 scopus 로고    scopus 로고
    • Species and recombination effects on DNA variability in the tomato genus
    • BAUDRY, E., C. KERDELHUE, H. INNAN and W. STEPHAN, 2001 Species and recombination effects on DNA variability in the tomato genus. Genetics 158: 1725-1735.
    • (2001) Genetics , vol.158 , pp. 1725-1735
    • Baudry, E.1    Kerdelhue, C.2    Innan, H.3    Stephan, W.4
  • 4
    • 0035933527 scopus 로고    scopus 로고
    • Evolutionary dynamics of plant R-genes
    • BERGELSON, J., M. KREITMAN, E. A. STAHL and D. TIAN, 2001 Evolutionary dynamics of plant R-genes. Science 292: 2281-2285.
    • (2001) Science , vol.292 , pp. 2281-2285
    • Bergelson, J.1    Kreitman, M.2    Stahl, E.A.3    Tian, D.4
  • 5
    • 0034625046 scopus 로고    scopus 로고
    • Rapid evolution in plant chitinases: Molecular targets of selection in plant-pathogen coevolution
    • BISHOP, J. G., A. M. DEAN and T. MITCHELL-OLDS, 2000 Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution. Proc. Natl. Acad. Sci. USA 97: 5322-5327.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 5322-5327
    • Bishop, J.G.1    Dean, A.M.2    Mitchell-Olds, T.3
  • 6
    • 12444347410 scopus 로고    scopus 로고
    • A high-density genetic recombination map of sequence-tagged sites for Sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses
    • BOWERS, J. E., C. ABBEY, S. ANDERSON, C. CHANG, X. DRAYE et al., 2003 A high-density genetic recombination map of sequence-tagged sites for Sorghum, as a framework for comparative structural and evolutionary genomics of tropical grains and grasses. Genetics 165: 367-386.
    • (2003) Genetics , vol.165 , pp. 367-386
    • Bowers, J.E.1    Abbey, C.2    Anderson, S.3    Chang, C.4    Draye, X.5
  • 8
    • 0031901554 scopus 로고    scopus 로고
    • Measures of divergence between populations and the effect of forces that reduce variability
    • CHARLESWORTH, B., 1998 Measures of divergence between populations and the effect of forces that reduce variability. Mol. Biol. Evol. 15: 538-543.
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 538-543
    • Charlesworth, B.1
  • 9
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • CHARLESWORTH, B., M. T. MORGAN and D. CHARLESWORTH, 1993 The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 10
    • 0028155025 scopus 로고
    • A detailed RFLP map of Sorghum bicolor × S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments
    • CHITTENDEN, L. M., K. F. SCHERTZ, Y. R. LIN, R. A. WING and A. H. PATERSON, 1994 A detailed RFLP map of Sorghum bicolor × S. propinquum, suitable for high-density mapping, suggests ancestral duplication of Sorghum chromosomes or chromosomal segments. Theor. Appl. Genet. 87: 925-933.
    • (1994) Theor. Appl. Genet. , vol.87 , pp. 925-933
    • Chittenden, L.M.1    Schertz, K.F.2    Lin, Y.R.3    Wing, R.A.4    Paterson, A.H.5
  • 14
    • 0034021510 scopus 로고    scopus 로고
    • Assessment of genetic diversity within and among germ plasm accessions in cultivated sorghum using microsatellite markers
    • DJE, Y., M. HEUERTZ, C. LEFEBVRE and X. VEKEMANS, 2000 Assessment of genetic diversity within and among germ plasm accessions in cultivated sorghum using microsatellite markers. Theor. Appl. Genet. 100: 918-925.
    • (2000) Theor. Appl. Genet. , vol.100 , pp. 918-925
    • Dje, Y.1    Heuertz, M.2    Lefebvre, C.3    Vekemans, X.4
  • 15
    • 0002594984 scopus 로고
    • A rapid DNA isolation procedure for small amounts of leaf tissue
    • DOYLE, J. J., and J. L. DOYLE, 1987 A rapid DNA isolation procedure for small amounts of leaf tissue. Phytochem. Bull. 19: 11-15.
    • (1987) Phytochem. Bull. , vol.19 , pp. 11-15
    • Doyle, J.J.1    Doyle, J.L.2
  • 17
    • 0034924997 scopus 로고    scopus 로고
    • Positive and negative selection on the human genome
    • FAY, J. C., G. J. WYCKOFF and C.-I WU, 2001 Positive and negative selection on the human genome. Genetics 158: 1227-1234.
    • (2001) Genetics , vol.158 , pp. 1227-1234
    • Fay, J.C.1    Wyckoff, G.J.2    Wu, C.-I.3
  • 18
    • 0032561403 scopus 로고    scopus 로고
    • Plant comparative genetics after 10 years
    • GALE, M. D., and K. M. DEVOS, 1998 Plant comparative genetics after 10 years. Science 282: 656-659.
    • (1998) Science , vol.282 , pp. 656-659
    • Gale, M.D.1    Devos, K.M.2
  • 19
    • 0030959648 scopus 로고    scopus 로고
    • DNA sequence evidence for the segmental allotetraploid origin of maize
    • GAUT, B. S., and J. F. DOEBLEY, 1997 DNA sequence evidence for the segmental allotetraploid origin of maize. Proc. Natl. Acad. Sci. USA 94: 6809-6814.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 6809-6814
    • Gaut, B.S.1    Doebley, J.F.2
  • 20
    • 0016319012 scopus 로고
    • Estimation of linkage disequilibrium in randomly mating populations
    • HILL, W. G., 1974 Estimation of linkage disequilibrium in randomly mating populations. Heredity 33: 229-239.
    • (1974) Heredity , vol.33 , pp. 229-239
    • Hill, W.G.1
  • 21
    • 0023339852 scopus 로고
    • A test of neutral molecular evolution based on nucleotide data
    • HUDSON, R. R., M. KREITMAN and M. AGUADÉ, 1987 A test of neutral molecular evolution based on nucleotide data. Genetics 116: 153-159.
    • (1987) Genetics , vol.116 , pp. 153-159
    • Hudson, R.R.1    Kreitman, M.2    Aguadé, M.3
  • 22
    • 0026709389 scopus 로고
    • Estimation of levels of gene flow from DNA sequence data
    • HUDSON, R. R., M. SLATKIN and W. P. MADDISON, 1992 Estimation of levels of gene flow from DNA sequence data. Genetics 132: 583-589.
    • (1992) Genetics , vol.132 , pp. 583-589
    • Hudson, R.R.1    Slatkin, M.2    Maddison, W.P.3
  • 23
    • 0006945881 scopus 로고
    • Nonrandom mating in experimental populations of maize Zea-Mays
    • KAHLER, A. L., C. O. GARDNER and R. W. ALLARD, 1984 Nonrandom mating in experimental populations of maize Zea-Mays. Crop Sci. 24: 350-354.
    • (1984) Crop Sci. , vol.24 , pp. 350-354
    • Kahler, A.L.1    Gardner, C.O.2    Allard, R.W.3
  • 24
    • 0006231966 scopus 로고    scopus 로고
    • Origins of domesticated sorghum and its early diffusion to India and China
    • edited by C. W. Smith and R. A. Frederiksen. John Wiley & Sons, New York
    • KIMBER, C., 2000 Origins of domesticated sorghum and its early diffusion to India and China, pp. 3-98 in Sorghum, edited by C. W. SMITH and R. A. FREDERIKSEN. John Wiley & Sons, New York.
    • (2000) Sorghum , pp. 3-98
    • Kimber, C.1
  • 26
    • 0032922271 scopus 로고    scopus 로고
    • The effect of mating system differences on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia
    • LIU, F., D. CHARLESWORTH and M. KREITMAN, 1999 The effect of mating system differences on nucleotide diversity at the phosphoglucose isomerase locus in the plant genus Leavenworthia. Genetics 151: 343-357.
    • (1999) Genetics , vol.151 , pp. 343-357
    • Liu, F.1    Charlesworth, D.2    Kreitman, M.3
  • 27
    • 0032827782 scopus 로고    scopus 로고
    • The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits
    • LONG, A. D., and C. H. LANGLEY, 1999 The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits. Genome Res. 9: 720-731.
    • (1999) Genome Res. , vol.9 , pp. 720-731
    • Long, A.D.1    Langley, C.H.2
  • 28
    • 0026428610 scopus 로고
    • Adaptive protein evolution at the Adh locus in Drosophila
    • MCDONALD, J. H., and M. KREITMAN, 1991 Adaptive protein evolution at the Adh locus in Drosophila. Nature 351: 652-654.
    • (1991) Nature , vol.351 , pp. 652-654
    • Mcdonald, J.H.1    Kreitman, M.2
  • 29
    • 0141480023 scopus 로고    scopus 로고
    • Distinct geographic patterns of genetic diversity are maintained in wild barley (Hordeum vulgare ssp. spontaneum) despite migration
    • MORRELL, P. L., K. E. LUNDY and M. T. CLEGG, 2003 Distinct geographic patterns of genetic diversity are maintained in wild barley (Hordeum vulgare ssp. spontaneum) despite migration. Proc. Natl. Acad. Sci. USA 100: 10812-10817.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 10812-10817
    • Morrell, P.L.1    Lundy, K.E.2    Clegg, M.T.3
  • 31
    • 0033962299 scopus 로고    scopus 로고
    • Linkage disequilibrium, gene trees and selfing: An ancestral recombination graph with partial self-fertilization
    • NORDBORG, M., 2000 Linkage disequilibrium, gene trees and selfing: an ancestral recombination graph with partial self-fertilization. Genetics 154: 923-929.
    • (2000) Genetics , vol.154 , pp. 923-929
    • Nordborg, M.1
  • 32
    • 0030822809 scopus 로고    scopus 로고
    • The coalescent process with selfing
    • NORDBORG, M., and P. DONNELLY, 1997 The coalescent process with selfing. Genetics 146: 1185-1195.
    • (1997) Genetics , vol.146 , pp. 1185-1195
    • Nordborg, M.1    Donnelly, P.2
  • 33
    • 0030482974 scopus 로고    scopus 로고
    • Increased levels of polymorphism surrounding selectively maintained sites in highly selfing species
    • NORDBORG, M., B. B. CHARLESWORTH and D. CHARLESWORTH, 1996 Increased levels of polymorphism surrounding selectively maintained sites in highly selfing species. Proc. R. Soc. Lond. Ser. B Biol. Sci. 263: 1033-1039.
    • (1996) Proc. R. Soc. Lond. Ser. B Biol. Sci. , vol.263 , pp. 1033-1039
    • Nordborg, M.1    Charlesworth, B.B.2    Charlesworth, D.3
  • 35
    • 0027327059 scopus 로고
    • Pattern of nucleotide substitutions in growth hormone-prolactin gene family: A paradigm for evolution by gene duplication
    • OHTA, T., 1993 Pattern of nucleotide substitutions in growth hormone-prolactin gene family: a paradigm for evolution by gene duplication. Genetics 134: 1271-1276.
    • (1993) Genetics , vol.134 , pp. 1271-1276
    • Ohta, T.1
  • 36
    • 0037058932 scopus 로고    scopus 로고
    • Near-neutrality in evolution of genes and gene regulation
    • OHTA, T., 2002 Near-neutrality in evolution of genes and gene regulation. Proc. Natl. Acad. Sci. USA 99: 16134-16137.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 16134-16137
    • Ohta, T.1
  • 37
    • 0029133699 scopus 로고
    • Convergent domestication of cereal crops by independent mutations at corresponding genetic loci
    • PATERSON, A. H., Y. R. LIN, Z. LI, K. F. SCHERTZ, J. F. DOEBLEY et al., 1995 Convergent domestication of cereal crops by independent mutations at corresponding genetic loci. Science 269: 1714-1718.
    • (1995) Science , vol.269 , pp. 1714-1718
    • Paterson, A.H.1    Lin, Y.R.2    Li, Z.3    Schertz, K.F.4    Doebley, J.F.5
  • 38
    • 0023427397 scopus 로고
    • On the theory of partially inbreeding finite populations. I. Partial selfing
    • POLLAK, E., 1987 On the theory of partially inbreeding finite populations. I. Partial selfing. Genetics 117: 353-360.
    • (1987) Genetics , vol.117 , pp. 353-360
    • Pollak, E.1
  • 39
    • 0036008761 scopus 로고    scopus 로고
    • Applications of single nucleotide polymorphisms in crop genetics
    • RAFALSKI, A., 2002 Applications of single nucleotide polymorphisms in crop genetics. Curr. Opin. Plant Biol. 5: 94-100.
    • (2002) Curr. Opin. Plant Biol. , vol.5 , pp. 94-100
    • Rafalski, A.1
  • 41
    • 2942589588 scopus 로고    scopus 로고
    • Techniques for developing new cultivars
    • edited by C. W. Smith and R. A. Frederiksen. John Wiley & Sons, New York
    • ROONEY, W. L., and C. W. SMITH, 2000 Techniques for developing new cultivars, pp. 329-347 in Sorghum, edited by C. W. SMITH and R. A. FREDERIKSEN. John Wiley & Sons, New York.
    • (2000) Sorghum , pp. 329-347
    • Rooney, W.L.1    Smith, C.W.2
  • 42
    • 0032972599 scopus 로고    scopus 로고
    • DnaSP version 3: An integrated program for molecular population genetics and molecular evolution analysis
    • ROZAS, J., and R. ROZAS, 1999 DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15: 174-175.
    • (1999) Bioinformatics , vol.15 , pp. 174-175
    • Rozas, J.1    Rozas, R.2
  • 43
    • 0034085378 scopus 로고    scopus 로고
    • Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana
    • SAVOLAINEN, O., C. H. LANGLEY, B. P. LAZZARO and H. FREVILLE, 2000 Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana. Mol. Biol. Evol. 17: 645-655.
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 645-655
    • Savolainen, O.1    Langley, C.H.2    Lazzaro, B.P.3    Freville, H.4
  • 44
    • 0346195650 scopus 로고    scopus 로고
    • Characterization of RFLP probe sequences for gene discovery and SSR development in Sorghum bicolor (L.) Moench
    • SCHLOSS, S. J., S. E. MITCHELL, G. M. WHITE, R. KUKATLA, J. E. BOWERS et al., 2002 Characterization of RFLP probe sequences for gene discovery and SSR development in Sorghum bicolor (L.) Moench. Theor. Appl. Genet. 105: 912-920.
    • (2002) Theor. Appl. Genet. , vol.105 , pp. 912-920
    • Schloss, S.J.1    Mitchell, S.E.2    White, G.M.3    Kukatla, R.4    Bowers, J.E.5
  • 45
    • 0037356573 scopus 로고    scopus 로고
    • Molecular population genetics of the Arabidopsis CLAVATA2 region: The genomic scale of variation and selection in a selfing species
    • SHEPARD, K. A., and M. D. PURUGGANAN, 2003 Molecular population genetics of the Arabidopsis CLAVATA2 region: the genomic scale of variation and selection in a selfing species. Genetics 163: 1083-1095.
    • (2003) Genetics , vol.163 , pp. 1083-1095
    • Shepard, K.A.1    Purugganan, M.D.2
  • 46
    • 0034255419 scopus 로고    scopus 로고
    • SNP frequencies in human genes: An excess of rare alleles and differing modes of selection
    • SUNYAEV, S. R., W. C. LATHE, III, V. E. RAMENSKY and P. BORK, 2000 SNP frequencies in human genes: an excess of rare alleles and differing modes of selection. Trends Genet. 16: 335-337.
    • (2000) Trends Genet. , vol.16 , pp. 335-337
    • Sunyaev, S.R.1    Lathe III, W.C.2    Ramensky, V.E.3    Bork, P.4
  • 47
    • 0024313579 scopus 로고
    • Statistical method for testing the neutral mutation hypothesis by DNA polymorphism
    • TAJIMA, F., 1989 Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-595.
    • (1989) Genetics , vol.123 , pp. 585-595
    • Tajima, F.1
  • 48
    • 0035979181 scopus 로고    scopus 로고
    • Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
    • TENAILLON, M. I., M. C. SAWKINS, A. D. LONG, R. L. GAUT, J. F. DOEBLEY et al., 2001 Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc. Natl. Acad. Sci. USA 98: 9161-9166.
    • (2001) Proc. Natl. Acad. Sci. USA , vol.98 , pp. 9161-9166
    • Tenaillon, M.I.1    Sawkins, M.C.2    Long, A.D.3    Gaut, R.L.4    Doebley, J.F.5
  • 49
    • 0037162474 scopus 로고    scopus 로고
    • Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication
    • VIGOUROUX, Y., M. MCMULLEN, C. T. HITTINGER, K. HOUCHINS, L. SCHULZ et al., 2002 Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proc. Natl. Acad. Sci. USA 99: 9650-9655.
    • (2002) Proc. Natl. Acad. Sci. USA , vol.99 , pp. 9650-9655
    • Vigouroux, Y.1    Mcmullen, M.2    Hittinger, C.T.3    Houchins, K.4    Schulz, L.5
  • 50
    • 0030087512 scopus 로고    scopus 로고
    • The variance of pairwise nucleotide differences in two populations with migration
    • WAKELEY, J., 1996 The variance of pairwise nucleotide differences in two populations with migration. Theor. Popul. Biol. 49: 39-57.
    • (1996) Theor. Popul. Biol. , vol.49 , pp. 39-57
    • Wakeley, J.1
  • 51
    • 0034758281 scopus 로고    scopus 로고
    • Gene genealogies in a metapopulation
    • WAKELEY, J., and N. ALIACAR, 2001 Gene genealogies in a metapopulation. Genetics 159: 893-905.
    • (2001) Genetics , vol.159 , pp. 893-905
    • Wakeley, J.1    Aliacar, N.2
  • 52
    • 0033580401 scopus 로고    scopus 로고
    • The limits of selection during maize domestication
    • WANG, R. L., A. STEC, J. HEY, L. LUKENS and J. DOEBLEY, 1999 The limits of selection during maize domestication. Nature 398: 236-239.
    • (1999) Nature , vol.398 , pp. 236-239
    • Wang, R.L.1    Stec, A.2    Hey, J.3    Lukens, L.4    Doebley, J.5
  • 53
    • 0016491430 scopus 로고
    • On the number of segregating sites in genetical models without recombination
    • WATTERSON, G. A., 1975 On the number of segregating sites in genetical models without recombination. Theor. Popul. Biol. 7: 256-276.
    • (1975) Theor. Popul. Biol. , vol.7 , pp. 256-276
    • Watterson, G.A.1
  • 54
    • 0032712146 scopus 로고    scopus 로고
    • The molecular evolution of terminal ear1, a regulatory gene in the genus Zea
    • WHITE, S. E., and J. F. DOEBLEY, 1999 The molecular evolution of terminal ear1, a regulatory gene in the genus Zea. Genetics 153: 1455-1462.
    • (1999) Genetics , vol.153 , pp. 1455-1462
    • White, S.E.1    Doebley, J.F.2
  • 55
    • 0031001580 scopus 로고    scopus 로고
    • The effective size of a subdivided population
    • WHITLOCK, M. C., and N. H. BARTON, 1997 The effective size of a subdivided population. Genetics 146: 427-441.
    • (1997) Genetics , vol.146 , pp. 427-441
    • Whitlock, M.C.1    Barton, N.H.2
  • 56
    • 0038075570 scopus 로고    scopus 로고
    • Subdivision and haplotype structure in natural populations of Arabidopsis lyrata
    • WRIGHT, S. I., B. LAUGA and D. CHARLESWORTH, 2003 Subdivision and haplotype structure in natural populations of Arabidopsis lyrata. Mol. Ecol. 12: 1247-1263.
    • (2003) Mol. Ecol. , vol.12 , pp. 1247-1263
    • Wright, S.I.1    Lauga, B.2    Charlesworth, D.3


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