Generation of DNA photolesions by two-photon absorption of a frequency-doubled Ti:sapphire laser

Journal of Photochemistry and Photobiology B: Biology

Volumn 102, Issue 2, 2011, Pages 161-168

  Tycon, Michael A ^a   Chakraborty, Asima ^a   Fecko, Christopher J ^a  

^a The University of North Carolina at Chapel Hill   (United States)

Author keywords

DNA photochemistry; DNA photolesions; Local DNA damage; Multiphoton absorption; Quantitative PCR assay; Two photon absorption

Indexed keywords

TITANIUM;

ARTICLE; DNA DAMAGE; DNA REPAIR; IN VITRO STUDY; LASER; LIGHT ABSORPTION; PHOTOCHEMISTRY; PHOTON ABSORPTIOMETRY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; QUANTUM YIELD;

ABSORPTION; DNA; DNA DAMAGE; DNA REPAIR; LASERS; PHOTONS; PLASMIDS; POLYMERASE CHAIN REACTION; ULTRAVIOLET RAYS;

EID: 78651418864     PISSN: 10111344     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jphotobiol.2010.11.004     Document Type: Article

References (47)

1. S.Y. Wang Photochemistry and Photobiology of Nucleic Acids 1976 Academic Press New York
2. H. Gorner Photochemistry of DNA and related biomolecules: quantum yields and consequences of photoionization J. Photochem. Photobiol. B 26 1994 117 139
3. C. Cremer, T. Cremer, M. Fukuda, and K. Nakanishi Detection of laser-UV microirradiation-induced DNA photolesions by immunofluorescent staining Hum. Genet. 54 1980 107 110
4. J. Essers, W. Vermeulen, and A.B. Houtsmuller DNA damage repair: anytime, anywhere? Curr. Opin. Cell Biol. 18 2006 240 246
5. M.J. Mone, M. Volker, O. Nikaido, L.H.F. Mullenders, A.A.v. Zeeland, P.J. Verschure, E.M.M. Manders, and R.v. Driel Local UV-induced DNA damage in cell nuclei results in local transcription inhibition EMBO Rep. 2 2001 1013 1017
6. M.J. Mone, T. Bernas, C. Dinant, F.A. Goedvree, E.M.M. Manders, M. Volker, A.B. Houtsmuller, J.H.J. Hoeijmakers, W. Vermeulen, and R.v. Driel In vivo dynamics of chromatin-associated complex formation in mammalian nucleotide excision repair Proc. Natl. Acad. Sci. USA 101 2004 15933 15937
7. S. Katsumi, N. Kobayashi, K. Imoto, A. Nakagawa, Y. Yamashina, T. Muramatsu, T. Shirai, S. Miyagawa, S. Sugiura, F. Hanaoka, T. Matsunaga, O. Nikaido, and T. Mori In situ visualization of ultraviolet-light-induced DNA damage repair in locally irradiated human fibroblasts J. Invest. Dermatol. 117 2001 1156 1161
8. K. Imoto, N. Kobayashi, S. Katsumi, Y. Nishiwaki, T.-a. Iwamoto, A. Yamamoto, Y. Yamashina, T. Shirai, S. Miyagawa, Y. Dohi, S. Sugiura, and T. Mori The total amount of DNA damage determines ultraviolet-radiation-induced cytotoxicity after uniform or localized irradiation of human cells J. Invest. Dermatol. 119 2002 1177 1182
9. C.L. Limoli, and J.F. Ward A new method for introducing double-strand breaks into cellular DNA Radiat. Res. 134 1993 160 169
10. E.P. Rogakou, C. Boon, C. Redon, and W.M. Bonner Megabase chromatin domains involved in DNA double-strand breaks in vivo J. Cell Biol. 146 1999 905 915
11. C. Lukas, J. Falck, J. Bartkova, J. Bartek, and J. Lukas Distinct spatiotemporal dynamics of mammalian checkpoint regulators induced by DNA damage Nat. Cell Biol. 5 2003 255 260
12. C. Lukas, F. Melander, M. Stucki, J. Falck, S. Bekker-Jensen, M. Goldberg, Y. Lerenthal, S.P. Jackson, J. Bartek, and J. Lukas Mdc1 couples DNA double-strand break recognition by Nbs1 with its H2AX-dependent chromatin retention EMBO J. 23 2004 2674 2683
13. S. Bekker-Jensen, C. Lukas, F. Melander, J. Bartek, and J. Lukas Dynamic assembly and sustained retention of 53BP1 at the sites of DNA damage are controlled by Mdc1/NFBD1 J. Cell Biol. 170 2005 201 211
14. S. Bekker-Jensen, C. Lukas, R. Kitagawa, F. Melander, M.B. Kastan, J. Bartek, and J. Lukas Spatial organization of the mammalian genome surveillance machinery in response to DNA strand breaks J. Cell Biol. 173 2006 195 206
15. L. Lan, S. Nakajima, Y. Oohata, M. Takao, S. Okano, M. Masutani, S.H. Wilson, and A. Yasui In situ analysis of repair processes for oxidative DNA damage in mammalian cells Proc. Natl. Acad. Sci. USA 101 2004 13738 13743
16. M.J. Kruhlak, A. Celeste, G. Dellaire, O. Fernandez-Capetillo, W.G. Muller, J.G. McNally, D.P. Bazett-Jones, and A. Nussenzweig Changes in chromatin structure and mobility in living cells at sites of DNA double-strand breaks J. Cell Biol. 172 2006 823 834
17. J.R. Lakowicz Nonlinear and two-photon-induced fluorescence Top. Fluoresc. Spectrosc. 1997 Kluwer Academic Publishers New York
18. W. Denk, J.H. Strickler, and W.W. Webb Two-photon laser scanning fluorescence microscopy Science 248 1990 73 76
19. W.R. Zipfel, R.M. Williams, and W.W. Webb Nonlinear magic: multiphoton microscopy in the biosciences Nat. Biotechnol. 21 2003 1369 1377
20. C. Dinant, M.d. Jager, J. Essers, W.A.v. Cappellen, R. Kanaar, A.B. Houtsmuller, and W. Vermeulen Activation of multiple DNA repair pathways by sub-nuclear damage induction methods J. Cell Sci. 120 2007 2731 2740
21. R.A. Meldrum, S.W. Botchway, C.W. Wharton, and G.J. Hirst Nanoscale spatial induction of ultraviolet photoproducts in cellular DNA by three-photon near-infrared absorption EMBO Rep. 4 2003 1144 1149
22. D. Trautlein, M. Deibler, A. Leitenstorfer, and E. Ferrando-May Specific local induction of DNA strand breaks by infrared multi-photon absorption Nucl. Acids Res. 38 2010
23. J. Elf, G.-W. Li, and X.S. Xie Probing transcription factor dynamics at the single-molecule level in a living cell Science 316 2007 1191 1194
24. K.M. Slade, R. Baker, M. Chua, N.L. Thompson, and G.J. Pielak Effects of recombinant protein expression on green fluorescent protein diffusion in Escherichia coli Biochemistry (Washington) 48 2009 5083 5089
25. Y. Hefetz, D.A. Dunn, T.F. Deutsch, L. Buckley, F. Hillenkamp, and I.E. Kochevar Laser photochemistry of DNA: two-photon absorption and optical breakdown using high-intensity, 532 nm radiation J. Am. Chem. Soc. 112 1990 8528 8532
26. T. Douki, M. Court, S. Sauvaigo, F. Odin, and J. Cadet Formation of the main UV-induced thymine dimeric lesions within isolated and cellular DNA as measured by high performance liquid chromatography-tandem mass spectrometry J. Biol. Chem. 275 2000 11678 11685
27. D. Wulff Kinetics of thymine photodimerization in DNA Biophys. J. 3 1963 355 362
28. F.F. Kadlubar, J. Chen, and J.Z. Chen DNA supercoiling suppresses real-time PCR: a new approach to the quantification of mitochondrial DNA damage and repair Nucl. Acids Res. 2007 1 12
29. R.O. Rahn, M.I. Stefan, J.R. Bolton, E. Goren, P.-S. Shaw, and K.R. Lykke Quantum yield of the iodide-iodate chemical actinometer: dependence of wavelength and concentration Photochem. Photobiol. 78 2003 146 152
30. R.O. Rahn Potassium iodide as a chemical actinometer for 254 nm radiation: use of iodate as an electron scavenger Photochem. Photobiol. 66 1997 450 455
31. D.P. Kalinowski, S. Illenye, and B.V. Houten Analysis of DNA damage and repair in murine leukemia L1210 cells using a quantitative polymerase chain reaction assay Nucl. Acids Res. 20 1992 3485 3494
32. S. Ayala-Torres, Y. Chen, T. Svoboda, J. Rosenblatt, and B.V. Houten Analysis of gene-specific DNA damage and repair using quantitative polymerase chain reaction Methods 22 2000 135 147
33. J.H. Santos, J.N. Meyer, B.S. Mandavilli, and B.V. Houten Quantitative PCR-based measurement of nuclear and mitochondrial DNA damage and repair in mammalian cells D.S. Henderson, Methods in Molecular Biology DNA Repair Protocols vol. 314 2006 Humana Press Totowa, NJ 183 199
34. M. Ponti, S.M. Forrow, R.L. Souhami, M. D'Incalci, and J.A. Hartley Measurement of the sequence specificity of covalent DNA modification by antineoplastic agents using Taq DNA polymerase Nucl. Acids Res. 19 1991 2929 2933
35. M.L. Boas Mathematical Methods in the Physical Sciences second ed. 1983 John Wiley & Sons, Inc.
36. M.H.R. Patrick, and R.O. Rahn Photochemistry and Photobiology of Nucleic Acids 1976 Academic Press New York
37. I.G. Gut, Y. Hefetz, I.E. Kochevar, and F. Hillenkamp Two-photon absorption cross sections of guanosine 5′-monophosphate and uridine 5′-monophosphate at 532 nm J. Phys. Chem. 97 1993 5171 5176
38. Y. Jiang, M. Rabbi, M. Kim, C. Ke, W. Lee, R. Clark, P.A. Mieczkowski, and P.E. Marszalek Biophys. J. 96 2009
39. T. Douki Effect of denaturation on the photochemistry of pyrimidines bases in isolated DNA J. Photochem. Photobiol. B 82 2006 45 52
40. W.J. Schreier, T.E. Schrader, F.O. Koller, P. Gilch, C.E. Crespo-Hernandez, V.N. Swaminathan, T. Carell, W. Zinth, and B. Kohler Thymine dimerization in DNA is an ultrafast photoreaction Science 315 2007 625 629
41. J.R. Lakowicz Principles of Fluorescence Spectroscopy 2006 Springer New York
42. M. Albota, C. Xu, and W.W. Webb Two-photon fluorescence excitation cross sections of biomolecular probes from 690 to 960 nm Appl. Optics 37 1998
43. T. Tanabe, M. Oyamada, K. Fujita, P. Dai, H. Tanaka, and T. Takamatsu Multiphoton excitation-evoked chromophore-assisted laser inactivation using green fluorescent protein Nat. Methods 2 2005 503 505
44. J. Liao, J. Roider, and D.G. Jay Chromophore-assisted laser inactivation of proteins is mediated by the photogeneration of free radicals Proc. Natl. Acad. Sci. USA 91 1994 2659 2663
45. J.C. Liao, J. Roider, and D.G. Jay Chromophore-assisted laser inactivation of proteins is mediated by the photogeneration of free radicals Proc. Natl Acad. Sci. USA 91 1994 2659 2663
46. C. Dinant, M. Jager, J. Essers, W.A. Cappellen, R. Kanaar, A.B. Houtsmuller, and W. Vermeulen Activation of multiple DNA repair pathways by subnuclear damage induction methods J. Cell Sci. 120 2007
47. C.H. Fan, J. Sun, and J.P. Longtin Breakdown threshold and localized electron density in water induced by ultrashort laser pulses J. Appl. Phys. 91 2002 2530 2536