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Volumn 278, Issue 2, 2011, Pages 295-315

Association of RNA with the uracil-DNA-degrading factor has major conformational effects and is potentially involved in protein folding

Author keywords

conformational states; cotranslational folding; RNA binding; RNA assisted folding; uracil DNA degrading factor

Indexed keywords

DROSOPHILA PROTEIN; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; NICKEL; RIBOSOME RNA; RNA; UNCLASSIFIED DRUG; URACIL DNA DEGRADING FACTOR;

EID: 78651090558     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2010.07951.x     Document Type: Article
Times cited : (6)

References (77)
  • 1
    • 0027278557 scopus 로고
    • Instability and decay of the primary structure of DNA
    • Lindahl T, (1993) Instability and decay of the primary structure of DNA. Nature 362, 709-715.
    • (1993) Nature , vol.362 , pp. 709-715
    • Lindahl, T.1
  • 2
    • 19144373027 scopus 로고    scopus 로고
    • The problem with pyrimidines
    • Pearl LH, &, Savva R, (1996) The problem with pyrimidines. Nat Struct Biol 3, 485-487.
    • (1996) Nat Struct Biol , vol.3 , pp. 485-487
    • Pearl, L.H.1    Savva, R.2
  • 3
    • 61849128423 scopus 로고    scopus 로고
    • Keeping uracil out of DNA: Physiological role, structure and catalytic mechanism of dUTPases
    • Vertessy BG, &, Toth J, (2009) Keeping uracil out of DNA: physiological role, structure and catalytic mechanism of dUTPases. Acc Chem Res 42, 97-106.
    • (2009) Acc Chem Res , vol.42 , pp. 97-106
    • Vertessy, B.G.1    Toth, J.2
  • 4
    • 0035216603 scopus 로고    scopus 로고
    • Introduction. dUTPases
    • Nyman PO, (2001) Introduction. dUTPases. Curr Protein Pept Sci 2, 277-285.
    • (2001) Curr Protein Pept Sci , vol.2 , pp. 277-285
    • Nyman, P.O.1
  • 5
    • 0034576553 scopus 로고    scopus 로고
    • The alpha/beta fold uracil DNA glycosylases: A common origin with diverse fates
    • RESEARCH0007
    • Aravind L, &, Koonin EV, (2000) The alpha/beta fold uracil DNA glycosylases: a common origin with diverse fates. Genome Biol 1, RESEARCH0007, 1-8.
    • (2000) Genome Biol , vol.1 , pp. 1-8
    • Aravind, L.1    Koonin, E.V.2
  • 9
    • 0022474744 scopus 로고
    • Analysis of protein circular dichroism spectra for secondary structure using a simple matrix multiplication
    • Compton LA, &, Johnson WC Jr, (1986) Analysis of protein circular dichroism spectra for secondary structure using a simple matrix multiplication. Anal Biochem 155, 155-167.
    • (1986) Anal Biochem , vol.155 , pp. 155-167
    • Compton, L.A.1    Johnson Jr., W.C.2
  • 10
    • 0031972919 scopus 로고    scopus 로고
    • 1-Anilino-8-naphthalene sulfonate anion-protein binding depends primarily on ion pair formation
    • Matulis D, &, Lovrien R, (1998) 1-Anilino-8-naphthalene sulfonate anion-protein binding depends primarily on ion pair formation. Biophys J 74, 422-429.
    • (1998) Biophys J , vol.74 , pp. 422-429
    • Matulis, D.1    Lovrien, R.2
  • 11
    • 0030219531 scopus 로고    scopus 로고
    • Applications of SYPRO orange and SYPRO red protein gel stains
    • Steinberg TH, Haugland RP, &, Singer VL, (1996) Applications of SYPRO orange and SYPRO red protein gel stains. Anal Biochem 239, 238-245.
    • (1996) Anal Biochem , vol.239 , pp. 238-245
    • Steinberg, T.H.1    Haugland, R.P.2    Singer, V.L.3
  • 12
    • 68849090290 scopus 로고    scopus 로고
    • Phosphorylation of hormone-sensitive lipase by protein kinase A in vitro promotes an increase in its hydrophobic surface area
    • Krintel C, Morgelin M, Logan DT, &, Holm C, (2009) Phosphorylation of hormone-sensitive lipase by protein kinase A in vitro promotes an increase in its hydrophobic surface area. FEBS J 276, 4752-4762.
    • (2009) FEBS J , vol.276 , pp. 4752-4762
    • Krintel, C.1    Morgelin, M.2    Logan, D.T.3    Holm, C.4
  • 13
    • 0030768931 scopus 로고    scopus 로고
    • The Hill equation revisited: Uses and misuses
    • Weiss JN, (1997) The Hill equation revisited: uses and misuses. FASEB J 11, 835-841.
    • (1997) FASEB J , vol.11 , pp. 835-841
    • Weiss, J.N.1
  • 15
    • 0029759715 scopus 로고    scopus 로고
    • Reactivation of denatured proteins by 23S ribosomal RNA: Role of domain v
    • Chattopadhyay S, Das B, &, Dasgupta C, (1996) Reactivation of denatured proteins by 23S ribosomal RNA: role of domain V. Proc Natl Acad Sci USA 93, 8284-8287.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 8284-8287
    • Chattopadhyay, S.1    Das, B.2    Dasgupta, C.3
  • 16
    • 0036493164 scopus 로고    scopus 로고
    • Mutations in domain v of the 23S ribosomal RNA of Bacillus subtilis that inactivate its protein folding property in vitro
    • Chowdhury S, Pal S, Ghosh J, &, DasGupta C, (2002) Mutations in domain V of the 23S ribosomal RNA of Bacillus subtilis that inactivate its protein folding property in vitro. Nucleic Acids Res 30, 1278-1285.
    • (2002) Nucleic Acids Res , vol.30 , pp. 1278-1285
    • Chowdhury, S.1    Pal, S.2    Ghosh, J.3    Dasgupta, C.4
  • 17
    • 77951247293 scopus 로고    scopus 로고
    • Drosophila proteins involved in metabolism of uracil-DNA possess different types of nuclear localization signals
    • Merenyi G, Konya E, &, Vertessy BG, (2010) Drosophila proteins involved in metabolism of uracil-DNA possess different types of nuclear localization signals. FEBS J 277, 2142-2156.
    • (2010) FEBS J , vol.277 , pp. 2142-2156
    • Merenyi, G.1    Konya, E.2    Vertessy, B.G.3
  • 18
    • 0037561998 scopus 로고    scopus 로고
    • AID mediates hypermutation by deaminating single stranded DNA
    • Dickerson SK, Market E, Besmer E, &, Papavasiliou FN, (2003) AID mediates hypermutation by deaminating single stranded DNA. J Exp Med 197, 1291-1296.
    • (2003) J Exp Med , vol.197 , pp. 1291-1296
    • Dickerson, S.K.1    Market, E.2    Besmer, E.3    Papavasiliou, F.N.4
  • 19
    • 0037388165 scopus 로고    scopus 로고
    • Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase
    • Bransteitter R, Pham P, Scharff MD, &, Goodman MF, (2003) Activation-induced cytidine deaminase deaminates deoxycytidine on single-stranded DNA but requires the action of RNase. Proc Natl Acad Sci USA 100, 4102-4107.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 4102-4107
    • Bransteitter, R.1    Pham, P.2    Scharff, M.D.3    Goodman, M.F.4
  • 21
    • 0032004598 scopus 로고    scopus 로고
    • The role of zinc finger linkers in p43 and TFIIIA binding to 5S rRNA and DNA
    • Ryan RF, &, Darby MK, (1998) The role of zinc finger linkers in p43 and TFIIIA binding to 5S rRNA and DNA. Nucleic Acids Res 26, 703-709.
    • (1998) Nucleic Acids Res , vol.26 , pp. 703-709
    • Ryan, R.F.1    Darby, M.K.2
  • 22
    • 2442483884 scopus 로고    scopus 로고
    • The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo
    • Brescia CC, Kaw MK, &, Sledjeski DD, (2004) The DNA binding protein H-NS binds to and alters the stability of RNA in vitro and in vivo. J Mol Biol 339, 505-514.
    • (2004) J Mol Biol , vol.339 , pp. 505-514
    • Brescia, C.C.1    Kaw, M.K.2    Sledjeski, D.D.3
  • 23
    • 0035976989 scopus 로고    scopus 로고
    • The major messenger ribonucleoprotein particle protein p50 (YB-1) promotes nucleic acid strand annealing
    • Skabkin MA, Evdokimova V, Thomas AA, &, Ovchinnikov LP, (2001) The major messenger ribonucleoprotein particle protein p50 (YB-1) promotes nucleic acid strand annealing. J Biol Chem 276, 44841-44847.
    • (2001) J Biol Chem , vol.276 , pp. 44841-44847
    • Skabkin, M.A.1    Evdokimova, V.2    Thomas, A.A.3    Ovchinnikov, L.P.4
  • 24
    • 0026681622 scopus 로고
    • MRNP4, a major mRNA-binding protein from Xenopus oocytes is identical to transcription factor FRG Y2
    • Deschamps S, Viel A, Garrigos M, Denis H, &, le Maire M, (1992) mRNP4, a major mRNA-binding protein from Xenopus oocytes is identical to transcription factor FRG Y2. J Biol Chem 267, 13799-13802.
    • (1992) J Biol Chem , vol.267 , pp. 13799-13802
    • Deschamps, S.1    Viel, A.2    Garrigos, M.3    Denis, H.4    Le Maire, M.5
  • 25
    • 67651149733 scopus 로고    scopus 로고
    • Identification of apurinic/apyrimidinic endonuclease 1 (APE1) as the endoribonuclease that cleaves c-myc mRNA
    • Barnes T, Kim WC, Mantha AK, Kim SE, Izumi T, Mitra S, &, Lee CH, (2009) Identification of apurinic/apyrimidinic endonuclease 1 (APE1) as the endoribonuclease that cleaves c-myc mRNA. Nucleic Acids Res 37, 3946-3958.
    • (2009) Nucleic Acids Res , vol.37 , pp. 3946-3958
    • Barnes, T.1    Kim, W.C.2    Mantha, A.K.3    Kim, S.E.4    Izumi, T.5    Mitra, S.6    Lee, C.H.7
  • 27
    • 0034326361 scopus 로고    scopus 로고
    • In vitro selection of an RNA sequence that interacts with high affinity with thymidylate synthase
    • Lin X, Mizunuma N, Chen T, Copur SM, Maley GF, Liu J, Maley F, &, Chu E, (2000) In vitro selection of an RNA sequence that interacts with high affinity with thymidylate synthase. Nucleic Acids Res 28, 4266-4274.
    • (2000) Nucleic Acids Res , vol.28 , pp. 4266-4274
    • Lin, X.1    Mizunuma, N.2    Chen, T.3    Copur, S.M.4    Maley, G.F.5    Liu, J.6    Maley, F.7    Chu, E.8
  • 28
    • 0030111238 scopus 로고    scopus 로고
    • The role of thymidylate synthase as an RNA binding protein
    • Chu E, &, Allegra CJ, (1996) The role of thymidylate synthase as an RNA binding protein. Bioessays 18, 191-198.
    • (1996) Bioessays , vol.18 , pp. 191-198
    • Chu, E.1    Allegra, C.J.2
  • 30
    • 1642463989 scopus 로고    scopus 로고
    • Characterization of a cis-acting regulatory element in the protein-coding region of human dihydrofolate reductase mRNA
    • Tai N, Schmitz JC, Chen TM, &, Chu E, (2004) Characterization of a cis-acting regulatory element in the protein-coding region of human dihydrofolate reductase mRNA. Biochem J 378, 999-1006.
    • (2004) Biochem J , vol.378 , pp. 999-1006
    • Tai, N.1    Schmitz, J.C.2    Chen, T.M.3    Chu, E.4
  • 31
    • 20344381944 scopus 로고    scopus 로고
    • Translational autoregulation of thymidylate synthase and dihydrofolate reductase
    • Tai N, Schmitz JC, Liu J, Lin X, Bailly M, Chen TM, &, Chu E, (2004) Translational autoregulation of thymidylate synthase and dihydrofolate reductase. Front Biosci 9, 2521-2526.
    • (2004) Front Biosci , vol.9 , pp. 2521-2526
    • Tai, N.1    Schmitz, J.C.2    Liu, J.3    Lin, X.4    Bailly, M.5    Chen, T.M.6    Chu, E.7
  • 32
    • 77950346738 scopus 로고    scopus 로고
    • A tale of two functions: Enzymatic activity and translational repression by carboxyltransferase
    • Meades G Jr, Benson BK, Grove A, &, Waldrop GL, (2010) A tale of two functions: enzymatic activity and translational repression by carboxyltransferase. Nucleic Acids Res 38, 1217-1227.
    • (2010) Nucleic Acids Res , vol.38 , pp. 1217-1227
    • Meades Jr., G.1    Benson, B.K.2    Grove, A.3    Waldrop, G.L.4
  • 33
    • 0042349629 scopus 로고    scopus 로고
    • Yeast aspartyl-tRNA synthetase binds specifically its own mRNA
    • Frugier M, &, Giege R, (2003) Yeast aspartyl-tRNA synthetase binds specifically its own mRNA. J Mol Biol 331, 375-383.
    • (2003) J Mol Biol , vol.331 , pp. 375-383
    • Frugier, M.1    Giege, R.2
  • 34
    • 0025635930 scopus 로고
    • Escherichia coli threonyl-tRNA synthetase and tRNA(Thr) modulate the binding of the ribosome to the translational initiation site of the thrS mRNA
    • Moine H, Romby P, Springer M, Grunberg-Manago M, Ebel JP, Ehresmann B, &, Ehresmann C, (1990) Escherichia coli threonyl-tRNA synthetase and tRNA(Thr) modulate the binding of the ribosome to the translational initiation site of the thrS mRNA. J Mol Biol 216, 299-310.
    • (1990) J Mol Biol , vol.216 , pp. 299-310
    • Moine, H.1    Romby, P.2    Springer, M.3    Grunberg-Manago, M.4    Ebel, J.P.5    Ehresmann, B.6    Ehresmann, C.7
  • 35
    • 0026726804 scopus 로고
    • Autoregulation of the yeast lysyl-tRNA synthetase gene GCD5/KRS1 by translational and transcriptional control mechanisms
    • Lanker S, Bushman JL, Hinnebusch AG, Trachsel H, &, Mueller PP, (1992) Autoregulation of the yeast lysyl-tRNA synthetase gene GCD5/KRS1 by translational and transcriptional control mechanisms. Cell 70, 647-657.
    • (1992) Cell , vol.70 , pp. 647-657
    • Lanker, S.1    Bushman, J.L.2    Hinnebusch, A.G.3    Trachsel, H.4    Mueller, P.P.5
  • 36
    • 34250634486 scopus 로고    scopus 로고
    • Escherichia coli ribosomal protein L20 binds as a single monomer to its own mRNA bearing two potential binding sites
    • Allemand F, Haentjens J, Chiaruttini C, Royer C, &, Springer M, (2007) Escherichia coli ribosomal protein L20 binds as a single monomer to its own mRNA bearing two potential binding sites. Nucleic Acids Res 35, 3016-3031.
    • (2007) Nucleic Acids Res , vol.35 , pp. 3016-3031
    • Allemand, F.1    Haentjens, J.2    Chiaruttini, C.3    Royer, C.4    Springer, M.5
  • 38
    • 0024025444 scopus 로고
    • Mutations in the leader sequence and initiation codon of the gene for ribosomal protein S20 (rpsT) affect both translational efficiency and autoregulation
    • Parsons GD, Donly BC, &, Mackie GA, (1988) Mutations in the leader sequence and initiation codon of the gene for ribosomal protein S20 (rpsT) affect both translational efficiency and autoregulation. J Bacteriol 170, 2485-2492.
    • (1988) J Bacteriol , vol.170 , pp. 2485-2492
    • Parsons, G.D.1    Donly, B.C.2    MacKie, G.A.3
  • 39
    • 0038442836 scopus 로고    scopus 로고
    • More than one way to skin a cat: Translational autoregulation by ribosomal protein S15
    • Springer M, &, Portier C, (2003) More than one way to skin a cat: translational autoregulation by ribosomal protein S15. Nat Struct Biol 10, 420-422.
    • (2003) Nat Struct Biol , vol.10 , pp. 420-422
    • Springer, M.1    Portier, C.2
  • 40
    • 0029833935 scopus 로고    scopus 로고
    • Translational autoregulation of the sgm gene from Micromonospora zionensis
    • Kojic M, Topisirovic L, &, Vasiljevic B, (1996) Translational autoregulation of the sgm gene from Micromonospora zionensis. J Bacteriol 178, 5493-5498.
    • (1996) J Bacteriol , vol.178 , pp. 5493-5498
    • Kojic, M.1    Topisirovic, L.2    Vasiljevic, B.3
  • 41
    • 0022892960 scopus 로고
    • Translational autoregulation of ermC 23S rRNA methyltransferase expression in Bacillus subtilis
    • Denoya CD, Bechhofer DH, &, Dubnau D, (1986) Translational autoregulation of ermC 23S rRNA methyltransferase expression in Bacillus subtilis. J Bacteriol 168, 1133-1141.
    • (1986) J Bacteriol , vol.168 , pp. 1133-1141
    • Denoya, C.D.1    Bechhofer, D.H.2    Dubnau, D.3
  • 42
    • 67651148170 scopus 로고    scopus 로고
    • Histone H3 N-terminal peptide binds directly to its own mRNA: A possible mode of feedback inhibition to control translation
    • Lee KH, Lee NJ, Hyun S, Park YK, Yang EG, Lee JK, Jeong S, &, Yu J, (2009) Histone H3 N-terminal peptide binds directly to its own mRNA: a possible mode of feedback inhibition to control translation. Chembiochem 10, 1313-1316.
    • (2009) Chembiochem , vol.10 , pp. 1313-1316
    • Lee, K.H.1    Lee, N.J.2    Hyun, S.3    Park, Y.K.4    Yang, E.G.5    Lee, J.K.6    Jeong, S.7    Yu, J.8
  • 43
    • 0037372298 scopus 로고    scopus 로고
    • Protein folding coupled to DNA binding in the catalytic domain of bacteriophage lambda integrase detected by mass spectrometry
    • Kamadurai HB, Subramaniam S, Jones RB, Green-Church KB, &, Foster MP, (2003) Protein folding coupled to DNA binding in the catalytic domain of bacteriophage lambda integrase detected by mass spectrometry. Protein Sci 12, 620-626.
    • (2003) Protein Sci , vol.12 , pp. 620-626
    • Kamadurai, H.B.1    Subramaniam, S.2    Jones, R.B.3    Green-Church, K.B.4    Foster, M.P.5
  • 44
    • 0030478012 scopus 로고    scopus 로고
    • Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry
    • Berger C, Jelesarov I, &, Bosshard HR, (1996) Coupled folding and site-specific binding of the GCN4-bZIP transcription factor to the AP-1 and ATF/CREB DNA sites studied by microcalorimetry. Biochemistry 35, 14984-14991.
    • (1996) Biochemistry , vol.35 , pp. 14984-14991
    • Berger, C.1    Jelesarov, I.2    Bosshard, H.R.3
  • 45
    • 0037340879 scopus 로고    scopus 로고
    • Thermodynamic characterization of the folding coupled DNA binding by the monomeric transcription activator GCN4 peptide
    • Wang X, Cao W, Cao A, &, Lai L, (2003) Thermodynamic characterization of the folding coupled DNA binding by the monomeric transcription activator GCN4 peptide. Biophys J 84, 1867-1875.
    • (2003) Biophys J , vol.84 , pp. 1867-1875
    • Wang, X.1    Cao, W.2    Cao, A.3    Lai, L.4
  • 46
    • 33745257256 scopus 로고    scopus 로고
    • RNA-dependent folding and stabilization of C5 protein during assembly of the E. coli RNase P holoenzyme
    • Guo X, Campbell FE, Sun L, Christian EL, Anderson VE, &, Harris ME, (2006) RNA-dependent folding and stabilization of C5 protein during assembly of the E. coli RNase P holoenzyme. J Mol Biol 360, 190-203.
    • (2006) J Mol Biol , vol.360 , pp. 190-203
    • Guo, X.1    Campbell, F.E.2    Sun, L.3    Christian, E.L.4    Anderson, V.E.5    Harris, M.E.6
  • 47
    • 26444436343 scopus 로고    scopus 로고
    • Intermediate states of ribonuclease III in complex with double-stranded RNA
    • Gan J, Tropea JE, Austin BP, Court DL, Waugh DS, &, Ji X, (2005) Intermediate states of ribonuclease III in complex with double-stranded RNA. Structure 13, 1435-1442.
    • (2005) Structure , vol.13 , pp. 1435-1442
    • Gan, J.1    Tropea, J.E.2    Austin, B.P.3    Court, D.L.4    Waugh, D.S.5    Ji, X.6
  • 49
    • 66849109240 scopus 로고    scopus 로고
    • The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins
    • Kramer G, Boehringer D, Ban N, &, Bukau B, (2009) The ribosome as a platform for co-translational processing, folding and targeting of newly synthesized proteins. Nat Struct Mol Biol 16, 589-597.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 589-597
    • Kramer, G.1    Boehringer, D.2    Ban, N.3    Bukau, B.4
  • 50
    • 58149199728 scopus 로고    scopus 로고
    • A pause for thought along the co-translational folding pathway
    • Komar AA, (2009) A pause for thought along the co-translational folding pathway. Trends Biochem Sci 34, 16-24.
    • (2009) Trends Biochem Sci , vol.34 , pp. 16-24
    • Komar, A.A.1
  • 53
    • 0032496137 scopus 로고    scopus 로고
    • Chaperone properties of bacterial elongation factor EF-Tu
    • DOI 10.1074/jbc.273.19.11478
    • Caldas TD, El Yaagoubi A, &, Richarme G, (1998) Chaperone properties of bacterial elongation factor EF-Tu. J Biol Chem 273, 11478-11482. (Pubitemid 28272041)
    • (1998) Journal of Biological Chemistry , vol.273 , Issue.19 , pp. 11478-11482
    • Caldas, T.D.1    El Yaagoubi, A.2    Richarme, G.3
  • 54
    • 0031448932 scopus 로고    scopus 로고
    • Renaturation of rhodanese by translational elongation factor (EF) Tu. Protein refolding by EF-Tu flexing
    • Kudlicki W, Coffman A, Kramer G, &, Hardesty B, (1997) Renaturation of rhodanese by translational elongation factor (EF) Tu. Protein refolding by EF-Tu flexing. J Biol Chem 272, 32206-32210.
    • (1997) J Biol Chem , vol.272 , pp. 32206-32210
    • Kudlicki, W.1    Coffman, A.2    Kramer, G.3    Hardesty, B.4
  • 55
    • 62049083910 scopus 로고    scopus 로고
    • Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
    • Zhang G, Hubalewska M, &, Ignatova Z, (2009) Transient ribosomal attenuation coordinates protein synthesis and co-translational folding. Nat Struct Mol Biol 16, 274-280.
    • (2009) Nat Struct Mol Biol , vol.16 , pp. 274-280
    • Zhang, G.1    Hubalewska, M.2    Ignatova, Z.3
  • 56
    • 77649245858 scopus 로고    scopus 로고
    • Translation efficiency is determined by both codon bias and folding energy
    • Tuller T, Waldman YY, Kupiec M, &, Ruppin E, (2010) Translation efficiency is determined by both codon bias and folding energy. Proc Natl Acad Sci USA 107, 3645-3650.
    • (2010) Proc Natl Acad Sci USA , vol.107 , pp. 3645-3650
    • Tuller, T.1    Waldman, Y.Y.2    Kupiec, M.3    Ruppin, E.4
  • 57
    • 0032699491 scopus 로고    scopus 로고
    • Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation
    • Komar AA, Lesnik T, &, Reiss C, (1999) Synonymous codon substitutions affect ribosome traffic and protein folding during in vitro translation. FEBS Lett 462, 387-391.
    • (1999) FEBS Lett , vol.462 , pp. 387-391
    • Komar, A.A.1    Lesnik, T.2    Reiss, C.3
  • 58
    • 0028079904 scopus 로고
    • The folding of the bifunctional TRP3 protein in yeast is influenced by a translational pause which lies in a region of structural divergence with Escherichia coli indoleglycerol-phosphate synthase
    • Crombie T, Boyle JP, Coggins JR, &, Brown AJ, (1994) The folding of the bifunctional TRP3 protein in yeast is influenced by a translational pause which lies in a region of structural divergence with Escherichia coli indoleglycerol-phosphate synthase. Eur J Biochem 226, 657-664.
    • (1994) Eur J Biochem , vol.226 , pp. 657-664
    • Crombie, T.1    Boyle, J.P.2    Coggins, J.R.3    Brown, A.J.4
  • 61
    • 52949137359 scopus 로고    scopus 로고
    • Synonymous mutations and ribosome stalling can lead to altered folding pathways and distinct minima
    • Tsai CJ, Sauna ZE, Kimchi-Sarfaty C, Ambudkar SV, Gottesman MM, &, Nussinov R, (2008) Synonymous mutations and ribosome stalling can lead to altered folding pathways and distinct minima. J Mol Biol 383, 281-291.
    • (2008) J Mol Biol , vol.383 , pp. 281-291
    • Tsai, C.J.1    Sauna, Z.E.2    Kimchi-Sarfaty, C.3    Ambudkar, S.V.4    Gottesman, M.M.5    Nussinov, R.6
  • 62
    • 47649093907 scopus 로고    scopus 로고
    • Why does the mutation G17736A/Val107Val (silent) in the F9 gene cause mild haemophilia B in five Swedish families?
    • Knobe KE, Sjorin E, &, Ljung RC, (2008) Why does the mutation G17736A/Val107Val (silent) in the F9 gene cause mild haemophilia B in five Swedish families? Haemophilia 14, 723-728.
    • (2008) Haemophilia , vol.14 , pp. 723-728
    • Knobe, K.E.1    Sjorin, E.2    Ljung, R.C.3
  • 63
    • 0037320652 scopus 로고    scopus 로고
    • Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor
    • Duan J, Wainwright MS, Comeron JM, Saitou N, Sanders AR, Gelernter J, &, Gejman PV, (2003) Synonymous mutations in the human dopamine receptor D2 (DRD2) affect mRNA stability and synthesis of the receptor. Hum Mol Genet 12, 205-216.
    • (2003) Hum Mol Genet , vol.12 , pp. 205-216
    • Duan, J.1    Wainwright, M.S.2    Comeron, J.M.3    Saitou, N.4    Sanders, A.R.5    Gelernter, J.6    Gejman, P.V.7
  • 64
    • 33847076187 scopus 로고    scopus 로고
    • Experimental confirmation of a key role for non-optimal codons in protein export
    • Zalucki YM, &, Jennings MP, (2007) Experimental confirmation of a key role for non-optimal codons in protein export. Biochem Biophys Res Commun 355, 143-148.
    • (2007) Biochem Biophys Res Commun , vol.355 , pp. 143-148
    • Zalucki, Y.M.1    Jennings, M.P.2
  • 65
    • 0031697801 scopus 로고    scopus 로고
    • The relationship between synonymous codon usage and protein structure
    • Xie T, &, Ding D, (1998) The relationship between synonymous codon usage and protein structure. FEBS Lett 434, 93-96.
    • (1998) FEBS Lett , vol.434 , pp. 93-96
    • Xie, T.1    Ding, D.2
  • 66
    • 0032493780 scopus 로고    scopus 로고
    • Specific correlations between relative synonymous codon usage and protein secondary structure
    • Oresic M, &, Shalloway D, (1998) Specific correlations between relative synonymous codon usage and protein secondary structure. J Mol Biol 281, 31-48.
    • (1998) J Mol Biol , vol.281 , pp. 31-48
    • Oresic, M.1    Shalloway, D.2
  • 67
    • 34548709778 scopus 로고    scopus 로고
    • Synonymous codon usage in different protein secondary structural classes of human genes: Implication for increased non-randomness of GC3 rich genes towards protein stability
    • Mukhopadhyay P, Basak S, &, Ghosh TC, (2007) Synonymous codon usage in different protein secondary structural classes of human genes: implication for increased non-randomness of GC3 rich genes towards protein stability. J Biosci 32, 947-963.
    • (2007) J Biosci , vol.32 , pp. 947-963
    • Mukhopadhyay, P.1    Basak, S.2    Ghosh, T.C.3
  • 68
    • 0030018101 scopus 로고    scopus 로고
    • Ribosome-mediated translational pause and protein domain organization
    • Thanaraj TA, &, Argos P, (1996) Ribosome-mediated translational pause and protein domain organization. Protein Sci 5, 1594-1612.
    • (1996) Protein Sci , vol.5 , pp. 1594-1612
    • Thanaraj, T.A.1    Argos, P.2
  • 69
    • 51649118422 scopus 로고    scopus 로고
    • Folding at the rhythm of the rare codon beat
    • Marin M, (2008) Folding at the rhythm of the rare codon beat. Biotechnol J 3, 1047-1057.
    • (2008) Biotechnol J , vol.3 , pp. 1047-1057
    • Marin, M.1
  • 70
    • 2442506930 scopus 로고    scopus 로고
    • A tradeoff between protein stability and conformational mobility in homotrimeric dUTPases
    • Takacs E, Grolmusz VK, &, Vertessy BG, (2004) A tradeoff between protein stability and conformational mobility in homotrimeric dUTPases. FEBS Lett 566, 48-54.
    • (2004) FEBS Lett , vol.566 , pp. 48-54
    • Takacs, E.1    Grolmusz, V.K.2    Vertessy, B.G.3
  • 71
    • 4644319196 scopus 로고    scopus 로고
    • CDtool -an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving
    • Lees JG, Smith BR, Wien F, Miles AJ, &, Wallace BA, (2004) CDtool-an integrated software package for circular dichroism spectroscopic data processing, analysis, and archiving. Anal Biochem 332, 285-289.
    • (2004) Anal Biochem , vol.332 , pp. 285-289
    • Lees, J.G.1    Smith, B.R.2    Wien, F.3    Miles, A.J.4    Wallace, B.A.5
  • 72
    • 45849096536 scopus 로고    scopus 로고
    • Protein secondary structure analyses from circular dichroism spectroscopy: Methods and reference databases
    • Whitmore L, &, Wallace BA, (2008) Protein secondary structure analyses from circular dichroism spectroscopy: methods and reference databases. Biopolymers 89, 392-400.
    • (2008) Biopolymers , vol.89 , pp. 392-400
    • Whitmore, L.1    Wallace, B.A.2
  • 73
    • 33747855587 scopus 로고    scopus 로고
    • A reference database for circular dichroism spectroscopy covering fold and secondary structure space
    • Lees JG, Miles AJ, Wien F, &, Wallace BA, (2006) A reference database for circular dichroism spectroscopy covering fold and secondary structure space. Bioinformatics 22, 1955-1962.
    • (2006) Bioinformatics , vol.22 , pp. 1955-1962
    • Lees, J.G.1    Miles, A.J.2    Wien, F.3    Wallace, B.A.4
  • 76
    • 0031588014 scopus 로고    scopus 로고
    • Plasmid pIP501 encoded transcriptional repressor CopR binds asymmetrically at two consecutive major grooves of the DNA
    • Steinmetzer K, &, Brantl S, (1997) Plasmid pIP501 encoded transcriptional repressor CopR binds asymmetrically at two consecutive major grooves of the DNA. J Mol Biol 269, 684-693.
    • (1997) J Mol Biol , vol.269 , pp. 684-693
    • Steinmetzer, K.1    Brantl, S.2
  • 77
    • 0037023779 scopus 로고    scopus 로고
    • Non-sequence-specific DNA binding by the FILAMENTOUS FLOWER protein from Arabidopsis thaliana is reduced by EDTA
    • Kanaya E, Nakajima N, &, Okada K, (2002) Non-sequence-specific DNA binding by the FILAMENTOUS FLOWER protein from Arabidopsis thaliana is reduced by EDTA. J Biol Chem 277, 11957-11964.
    • (2002) J Biol Chem , vol.277 , pp. 11957-11964
    • Kanaya, E.1    Nakajima, N.2    Okada, K.3


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