-
1
-
-
0034737432
-
Ribosome-mediated folding of partially unfolded ricin A-chain
-
Argent, R. H., A. M. Parrott, P. J. Day, L. M. Roberts, P. G. Stockley, J. M. Lord, and S. E. Radford. 2000. Ribosome-mediated folding of partially unfolded ricin A-chain. J. Biol. Chem. 275:9263-9269.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 9263-9269
-
-
Argent, R.H.1
Parrott, A.M.2
Day, P.J.3
Roberts, L.M.4
Stockley, P.G.5
Lord, J.M.6
Radford, S.E.7
-
2
-
-
0033607003
-
Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit
-
Ban, N., P. Nissen, J. Hansen, M. Capel, P. B. Moore, and T. A. Steitz. 1999. Placement of protein and RNA structures into a 5 A-resolution map of the 50S ribosomal subunit. Nature 400:841-847.
-
(1999)
Nature
, vol.400
, pp. 841-847
-
-
Ban, N.1
Nissen, P.2
Hansen, J.3
Capel, M.4
Moore, P.B.5
Steitz, T.A.6
-
3
-
-
33645023826
-
MassSorter: A tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences
-
Barsnes, H., S. O. Mikalsen, and I. Eidhammer. 2006. MassSorter: a tool for administrating and analyzing data from mass spectrometry experiments on proteins with known amino acid sequences. BMC Bioinform. 7:42.
-
(2006)
BMC Bioinform
, vol.7
, pp. 42
-
-
Barsnes, H.1
Mikalsen, S.O.2
Eidhammer, I.3
-
4
-
-
37449018134
-
Protein folding following synthesis in vitro and in vivo: Association of newly synthesized protein with 50S subunit of E. coli ribosome
-
Basu, A., D. Samanta, A. Bhattacharya, A. Das, D. Das, and C. Dasgupta. 2008. Protein folding following synthesis in vitro and in vivo: association of newly synthesized protein with 50S subunit of E. coli ribosome. Biochem. Biophys. Res. Commun. 366:592-597.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.366
, pp. 592-597
-
-
Basu, A.1
Samanta, D.2
Bhattacharya, A.3
Das, A.4
Das, D.5
Dasgupta, C.6
-
5
-
-
37449003019
-
In vitro protein folding by E. coli ribosome: Unfolded protein splitting 70S to interact with 50S subunit
-
Basu, A., D. Samanta, D. Das, S. Chowdhury, A. Bhattacharya, J. Ghosh, A. Das, and C. Dasgupta. 2008. In vitro protein folding by E. coli ribosome: unfolded protein splitting 70S to interact with 50S subunit. Biochem. Biophys. Res. Commun. 366:598-603.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.366
, pp. 598-603
-
-
Basu, A.1
Samanta, D.2
Das, D.3
Chowdhury, S.4
Bhattacharya, A.5
Ghosh, J.6
Das, A.7
Dasgupta, C.8
-
6
-
-
0020134907
-
Nascent polypeptide chains emerge from the exit domain of the large ribosomal subunit: Immune mapping of the nascent chain
-
Bernabeu, C., and J. A. Lake. 1982. Nascent polypeptide chains emerge from the exit domain of the large ribosomal subunit: immune mapping of the nascent chain. Proc. Natl. Acad. Sci. USA 79:3111-3115.
-
(1982)
Proc. Natl. Acad. Sci. USA
, vol.79
, pp. 3111-3115
-
-
Bernabeu, C.1
Lake, J.A.2
-
7
-
-
0028227079
-
Refolding of denatured lactate dehydrogenase by Escherichia coli ribosomes
-
Chattopadhyay, S., B. Das, A. K. Bera, D. Dasgupta, and C. Dasgupta. 1994. Refolding of denatured lactate dehydrogenase by Escherichia coli ribosomes. Biochem. J. 300:717-721.
-
(1994)
Biochem. J
, vol.300
, pp. 717-721
-
-
Chattopadhyay, S.1
Das, B.2
Bera, A.K.3
Dasgupta, D.4
Dasgupta, C.5
-
8
-
-
0029759715
-
Reactivation of denatured proteins by 23S ribosomal RNA: Role of domain V
-
Chattopadhyay, S., B. Das, and C. Dasgupta. 1996. Reactivation of denatured proteins by 23S ribosomal RNA: role of domain V. Proc. Natl. Acad. Sci. USA 93:8284-8287.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 8284-8287
-
-
Chattopadhyay, S.1
Das, B.2
Dasgupta, C.3
-
9
-
-
0032898902
-
Protein folding in Escherichia coli: Role of 23S ribosomal RNA
-
Chattopadhyay, S., S. Pal, D. Pal, D. Sarkar, S. Chandra, and C. Das Gupta. 1999. Protein folding in Escherichia coli: role of 23S ribosomal RNA. Biochim. Biophys. Acta 1429:293-298.
-
(1999)
Biochim. Biophys. Acta
, vol.1429
, pp. 293-298
-
-
Chattopadhyay, S.1
Pal, S.2
Pal, D.3
Sarkar, D.4
Chandra, S.5
Das Gupta, C.6
-
10
-
-
0032527774
-
Flexibility of the nascent polypeptide chain within the ribosome - contacts from the peptide N-terminus to a specific region of the 30S subunit
-
Choi, K. M., J. F. Atkins, R. F. Gesteland, and R. Brimacombe. 1998. Flexibility of the nascent polypeptide chain within the ribosome - contacts from the peptide N-terminus to a specific region of the 30S subunit. Eur. J. Biochem. 255:409-413.
-
(1998)
Eur. J. Biochem
, vol.255
, pp. 409-413
-
-
Choi, K.M.1
Atkins, J.F.2
Gesteland, R.F.3
Brimacombe, R.4
-
11
-
-
0036493164
-
Mutations in domain V of the 23S ribosomal RNA of Bacillus subtilis that inactivate its protein folding property in vitro
-
Chowdhury, S., S. Pal, J. Ghosh, and C. DasGupta. 2002. Mutations in domain V of the 23S ribosomal RNA of Bacillus subtilis that inactivate its protein folding property in vitro. Nucleic Acids Res. 30:1278-1285.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1278-1285
-
-
Chowdhury, S.1
Pal, S.2
Ghosh, J.3
DasGupta, C.4
-
12
-
-
0035816546
-
A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates
-
Clark, P. L., and J. King. 2001. A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates. J. Biol. Chem. 276:25411-25420.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 25411-25420
-
-
Clark, P.L.1
King, J.2
-
13
-
-
0030048409
-
In vitro protein folding by ribosomes from Escherichia coli, wheat germ and rat liver: The role of the 50S particle and its 23S rRNA
-
Das, B., S. Chattopadhyay, A. K. Bera, and C. Dasgupta. 1996. In vitro protein folding by ribosomes from Escherichia coli, wheat germ and rat liver: the role of the 50S particle and its 23S rRNA. Eur. J. Biochem. 235:613-621.
-
(1996)
Eur. J. Biochem
, vol.235
, pp. 613-621
-
-
Das, B.1
Chattopadhyay, S.2
Bera, A.K.3
Dasgupta, C.4
-
14
-
-
0026537403
-
Reactivation of denatured fungal glucose 6-phosphate dehydrogenase and E. coli alkaline phosphatase with E. coli ribosome
-
Das, B., S. Chattopadhyay, and C. Das Gupta. 1992. Reactivation of denatured fungal glucose 6-phosphate dehydrogenase and E. coli alkaline phosphatase with E. coli ribosome. Biochem. Biophys. Res. Commun. 183:774-780.
-
(1992)
Biochem. Biophys. Res. Commun
, vol.183
, pp. 774-780
-
-
Das, B.1
Chattopadhyay, S.2
Das Gupta, C.3
-
15
-
-
0022423920
-
Theory for the folding and stability of globular proteins
-
Dill, K. A. 1985. Theory for the folding and stability of globular proteins. Biochemistry 24:1501-1509.
-
(1985)
Biochemistry
, vol.24
, pp. 1501-1509
-
-
Dill, K.A.1
-
16
-
-
0026601409
-
Functional interactions within 23S rRNA involving the peptidyl transferase center
-
Douthwaite, S. 1992. Functional interactions within 23S rRNA involving the peptidyl transferase center. J. Bacteriol. 174:1333-1338.
-
(1992)
J. Bacteriol
, vol.174
, pp. 1333-1338
-
-
Douthwaite, S.1
-
17
-
-
0038575097
-
Ribosome-DnaK interactions in relation to protein folding
-
Ghosh, J., A. Basu, S. Pal, S. Chowdhuri, A. Bhattacharya, D. Pal, D. K. Chattoraj, and C. DasGupta. 2003. Ribosome-DnaK interactions in relation to protein folding. Mol. Microbiol. 48:1679-1692.
-
(2003)
Mol. Microbiol
, vol.48
, pp. 1679-1692
-
-
Ghosh, J.1
Basu, A.2
Pal, S.3
Chowdhuri, S.4
Bhattacharya, A.5
Pal, D.6
Chattoraj, D.K.7
DasGupta, C.8
-
18
-
-
1842766175
-
Three-dimensional structures of translating ribosomes by Cryo-EM
-
Gilbert, R. J., P. Fucini, S. Connell, S. D. Fuller, K. H. Nierhaus, C. V. Robinson, C. M. Dobson, and D. I. Stuart. 2004. Three-dimensional structures of translating ribosomes by Cryo-EM. Mol. Cell 14:57-66.
-
(2004)
Mol. Cell
, vol.14
, pp. 57-66
-
-
Gilbert, R.J.1
Fucini, P.2
Connell, S.3
Fuller, S.D.4
Nierhaus, K.H.5
Robinson, C.V.6
Dobson, C.M.7
Stuart, D.I.8
-
19
-
-
0033613998
-
Mutations in the conserved P loop perturb the conformation of two structural elements in the peptidyl transferase center of 23 S ribosomal RNA
-
Gregory, S. T., and A. E. Dahlberg. 1999. Mutations in the conserved P loop perturb the conformation of two structural elements in the peptidyl transferase center of 23 S ribosomal RNA. J. Mol. Biol. 285:1475-1483.
-
(1999)
J. Mol. Biol
, vol.285
, pp. 1475-1483
-
-
Gregory, S.T.1
Dahlberg, A.E.2
-
21
-
-
0035865891
-
Protein-RNA interactions: A structural analysis
-
Jones, S., D. T. Daley, N. M. Luscombe, H. M. Berman, and J. M. Thornton. 2001. Protein-RNA interactions: a structural analysis. Nucleic Acids Res. 29:943-954.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 943-954
-
-
Jones, S.1
Daley, D.T.2
Luscombe, N.M.3
Berman, H.M.4
Thornton, J.M.5
-
22
-
-
0030929725
-
Cotranslational folding of globin
-
Komar, A. A., A. Kommer, I. A. Krasheninnikov, and A. S. Spirin. 1997. Cotranslational folding of globin. J. Biol. Chem. 272:10646-10651.
-
(1997)
J. Biol. Chem
, vol.272
, pp. 10646-10651
-
-
Komar, A.A.1
Kommer, A.2
Krasheninnikov, I.A.3
Spirin, A.S.4
-
23
-
-
0030623528
-
Ribosomes and ribosomal RNA as chaperones for folding of proteins
-
Kudlicki, W., A. Coffman, G. Kramer, and B. Hardesty. 1997. Ribosomes and ribosomal RNA as chaperones for folding of proteins. Fold. Des. 2:101-108.
-
(1997)
Fold. Des
, vol.2
, pp. 101-108
-
-
Kudlicki, W.1
Coffman, A.2
Kramer, G.3
Hardesty, B.4
-
24
-
-
28344439968
-
Complete MALDI-ToF MS analysis of cross-linked peptide-RNA oligonucleotides derived from nonlabeled UV-irradiated ribonucleoprotein particles
-
Kuhn-Holsken, E., C. Lenz, B. Sander, R. Luhrmann, and H. Urlaub. 2005. Complete MALDI-ToF MS analysis of cross-linked peptide-RNA oligonucleotides derived from nonlabeled UV-irradiated ribonucleoprotein particles. RNA 11:1915-1930.
-
(2005)
RNA
, vol.11
, pp. 1915-1930
-
-
Kuhn-Holsken, E.1
Lenz, C.2
Sander, B.3
Luhrmann, R.4
Urlaub, H.5
-
25
-
-
0025811850
-
Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA
-
Moazed, D., and H. F. Noller. 1991. Sites of interaction of the CCA end of peptidyl-tRNA with 23S rRNA. Proc. Natl. Acad. Sci. USA 88:3725-3728.
-
(1991)
Proc. Natl. Acad. Sci. USA
, vol.88
, pp. 3725-3728
-
-
Moazed, D.1
Noller, H.F.2
-
26
-
-
0034637161
-
The structural basis of ribosome activity in peptide bond synthesis
-
Nissen, P., J. Hansen, N. Ban, P. B. Moore, and T. A. Steitz. 2000. The structural basis of ribosome activity in peptide bond synthesis. Science 289:920-930.
-
(2000)
Science
, vol.289
, pp. 920-930
-
-
Nissen, P.1
Hansen, J.2
Ban, N.3
Moore, P.B.4
Steitz, T.A.5
-
27
-
-
0026639881
-
Unusual resistance of peptidyl transferase to protein extraction procedures
-
Noller, H. F., V. Hoffarth, and L. Zimniak. 1992. Unusual resistance of peptidyl transferase to protein extraction procedures. Science 256:1416-1419.
-
(1992)
Science
, vol.256
, pp. 1416-1419
-
-
Noller, H.F.1
Hoffarth, V.2
Zimniak, L.3
-
28
-
-
0027375408
-
Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity
-
O'Connor, M., and A. E. Dahlberg. 1993. Mutations at U2555, a tRNA-protected base in 23S rRNA, affect translational fidelity. Proc. Natl. Acad. Sci. USA 90:9214-9218.
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 9214-9218
-
-
O'Connor, M.1
Dahlberg, A.E.2
-
29
-
-
0029617892
-
The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection
-
O'Connor, M., and A. E. Dahlberg. 1995. The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection. J. Mol. Biol. 254:838-847.
-
(1995)
J. Mol. Biol
, vol.254
, pp. 838-847
-
-
O'Connor, M.1
Dahlberg, A.E.2
-
30
-
-
0031574349
-
Reactivation of denatured proteins by domain V of bacterial 23S rRNA
-
Pal, D., S. Chattopadhyay, S. Chandra, D. Sarkar, A. Chakraborty, and C. Das Gupta. 1997. Reactivation of denatured proteins by domain V of bacterial 23S rRNA. Nucleic Acids Res. 25:5047-5051.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 5047-5051
-
-
Pal, D.1
Chattopadhyay, S.2
Chandra, S.3
Sarkar, D.4
Chakraborty, A.5
Das Gupta, C.6
-
31
-
-
0032746279
-
Complementary role of two fragments of domain V of 23 S ribosomal RNA in protein folding
-
Pal, S., S. Chandra, S. Chowdhury, D. Sarkar, A. N. Ghosh, and C. D. Gupta. 1999. Complementary role of two fragments of domain V of 23 S ribosomal RNA in protein folding. J. Biol. Chem. 274:32771-32777.
-
(1999)
J. Biol. Chem
, vol.274
, pp. 32771-32777
-
-
Pal, S.1
Chandra, S.2
Chowdhury, S.3
Sarkar, D.4
Ghosh, A.N.5
Gupta, C.D.6
-
32
-
-
33847357772
-
Protein-RNA contacts at crystal packing surfaces
-
Phipps, K. R., and H. Li. 2007. Protein-RNA contacts at crystal packing surfaces. Proteins 67:121-127.
-
(2007)
Proteins
, vol.67
, pp. 121-127
-
-
Phipps, K.R.1
Li, H.2
-
33
-
-
0027250627
-
Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration
-
Privalov, P. L., and G. I. Makhatadze. 1993. Contribution of hydration to protein folding thermodynamics. II. The entropy and Gibbs energy of hydration. J. Mol. Biol. 232:660-679.
-
(1993)
J. Mol. Biol
, vol.232
, pp. 660-679
-
-
Privalov, P.L.1
Makhatadze, G.I.2
-
34
-
-
0344442420
-
Analysis of site-specific protein-RNA cross-links in isolated RNP complexes, combining affinity selection and mass spectrometry
-
Rhode, B. M., K. Hartmuth, H. Urlaub, and R. Luhrmann. 2003. Analysis of site-specific protein-RNA cross-links in isolated RNP complexes, combining affinity selection and mass spectrometry. RNA 9:1542-1551.
-
(2003)
RNA
, vol.9
, pp. 1542-1551
-
-
Rhode, B.M.1
Hartmuth, K.2
Urlaub, H.3
Luhrmann, R.4
-
35
-
-
0036606348
-
23S rRNA assisted folding of cytoplasmic malate dehydrogenase is distinctly different from its self-folding
-
Sanyal, S. C., S. Pal, S. Chowdhury, and C. DasGupta. 2002. 23S rRNA assisted folding of cytoplasmic malate dehydrogenase is distinctly different from its self-folding. Nucleic Acids Res. 30:2390-2397.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 2390-2397
-
-
Sanyal, S.C.1
Pal, S.2
Chowdhury, S.3
DasGupta, C.4
-
36
-
-
0037040406
-
Regulatory nascent peptides in the ribosomal tunnel
-
Tenson, T., and M. Ehrenberg. 2002. Regulatory nascent peptides in the ribosomal tunnel. Cell 108:591-594.
-
(2002)
Cell
, vol.108
, pp. 591-594
-
-
Tenson, T.1
Ehrenberg, M.2
-
37
-
-
0032529144
-
Precise determination of RNA-protein contact sites in the 50S ribosomal subunit of Escherichia coli
-
Thiede, B., H. Urlaub, H. Neubauer, G. Grelle, and B. Wittmann-Liebold. 1998. Precise determination of RNA-protein contact sites in the 50S ribosomal subunit of Escherichia coli. Biochem. J. 334:39-42.
-
(1998)
Biochem. J
, vol.334
, pp. 39-42
-
-
Thiede, B.1
Urlaub, H.2
Neubauer, H.3
Grelle, G.4
Wittmann-Liebold, B.5
-
38
-
-
0036354777
-
A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles
-
Urlaub, H., K. Hartmuth, and R. Luhrmann. 2002. A two-tracked approach to analyze RNA-protein crosslinking sites in native, nonlabeled small nuclear ribonucleoprotein particles. Methods 26:170-181.
-
(2002)
Methods
, vol.26
, pp. 170-181
-
-
Urlaub, H.1
Hartmuth, K.2
Luhrmann, R.3
-
39
-
-
0034731349
-
A general approach for identification of RNA-protein cross-linking sites within native human spliceosomal small nuclear ribonucleoproteins (snRNPs). Analysis of RNA-protein contacts in native U1 and U4/U6.U5 snRNPs
-
Urlaub, H., K. Hartmuth, S. Kostka, G. Grelle, and R. Luhrmann. 2000. A general approach for identification of RNA-protein cross-linking sites within native human spliceosomal small nuclear ribonucleoproteins (snRNPs). Analysis of RNA-protein contacts in native U1 and U4/U6.U5 snRNPs. J. Biol. Chem. 275:41458-41468.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 41458-41468
-
-
Urlaub, H.1
Hartmuth, K.2
Kostka, S.3
Grelle, G.4
Luhrmann, R.5
|