Gap filling activities of Pseudomonas DNA ligase D (LigD) polymerase and functional interactions of LigD with the DNA end-binding Ku protein

Journal of Biological Chemistry

Volumn 285, Issue 7, 2010, Pages 4815-4825

  Zhu, Hui ^a   Shuman, Stewart ^a  

^a MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PATHOGENS; C TERMINUS; DNA DOUBLE STRAND BREAKS; DNA LIGASES; DUPLEX DNA; FILLING GAPS; FUNCTIONAL INTERACTION; GAP FILLING; HOMODIMERIZATION; HOMODIMERS; NONHOMOLOGOUS END JOINING; NUCLEOBASES; PHOSPHATE BINDING; PHOSPHATE GROUP; PLASMID DNA; PRIMER EXTENSION; PRIMER TERMINUS; PROCESSIVITY; PSEUDOMONAS AERUGINOSA; RIBONUCLEOTIDES; SIDE CHAINS; STABLE COMPLEXES; TEMPLATE STRAND; TEMPLATED;

AMINO ACIDS; COMPLEXATION; DNA; FUNCTIONAL POLYMERS; JOINING; MICROBIOLOGY; NUCLEOTIDES; ORGANIC ACIDS; POLYMERS; REPAIR;

GENES;

DEOXYRIBONUCLEOTIDE; DNA LIGASE D; DNA POLYMERASE; KU ANTIGEN; LIGASE; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CATALYSIS; CONTROLLED STUDY; DIMERIZATION; DNA BINDING; DNA PROTEIN COMPLEX; DNA REPAIR; DOUBLE STRANDED DNA BREAK; ENZYME ACTIVITY; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN PROTEIN INTERACTION; PSEUDOMONAS;

BACTERIAL PROTEINS; DNA; DNA BREAKS, DOUBLE-STRANDED; DNA REPAIR; DNA-BINDING PROTEINS; DNA-DIRECTED DNA POLYMERASE; MUTATION; PROTEIN STRUCTURE, QUATERNARY; PSEUDOMONAS AERUGINOSA;

BACTERIA (MICROORGANISMS); EUKARYOTA; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 77951187826     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M109.073874     Document Type: Article

References (30)

1. Shuman, S., and Glickman, M. S. (2007) Nat. Rev. Microbiol. 5, 852-861
2. Pitcher, R. S., Brissett, N. C., and Doherty, A. J. (2007) Annu. Rev. Microbiol. 61, 259-282
3. Gong, C., Bongiorno, P., Martins, A., Stephanou, N. C., Zhu, H., Shuman, S., and Glickman, M. S. (2005) Nat. Struct. Mol. Biol. 12, 304-312
4. Aniukwu, J., Glickman, M. S., and Shuman, S. (2008) Genes Dev. 22, 512-527
5. Weller, G. R., Kysela, B., Roy, R., Tonkin, L. M., Scanlan, E., Della, M., Devine, S. K., Day, J. P., Wilkinson, A., d'Adda, di, Fagagna, F., Devine, K. M., Bowater, R. P., Jeggo, P. A., Jackson, S. P., and Doherty, A. J. (2002) Science 297, 1686-1689
6. Zhu, H., and Shuman, S. (2007) Nucleic Acids Res. 35, 3631-3645
7. Akey, D., Martins, A., Aniukwu, J., Glickman, M. S., Shuman, S., and Berger, J. M. (2006) J. Biol. Chem. 281, 13412-13423
8. Della, M., Palmbos, P. L., Tseng, H. M., Tonkin, L. M., Daley, J. M., Topper, L. M., Pitcher, R. S., Tomkinson, A. E., Wilson, T. E., and Doherty, A. J. (2004) Science 306, 683-685
9. Pitcher, R. S., Tonkin, L. M., Green, A. J., and Doherty, A. J. (2005) J. Mol. Biol. 351, 531-544
10. Zhu, H., and Shuman, S. (2005) J. Biol. Chem. 280, 418-427
11. Zhu, H., Nandakumar, J., Aniukwu, J., Wang, L. K., Glickman, M. S., Lima, C. D., and Shuman, S. (2006) Proc. Natl. Acad. Sci. U.S.A. 103, 1711-1716
12. Pitcher, R. S., Brissett, N. C., Picher, A. J., Andrade, P., Juarez, R., Thompson, D., Fox, G. C., Blanco, L., and Doherty, A. J. (2007) J. Mol. Biol. 366, 391-405
13. Yakovleva, L., and Shuman, S. (2006) J. Biol. Chem. 281, 25026-25040
14. Zhu, H., and Shuman, S. (2005) J. Biol. Chem. 280, 25973-25981
15. Zhu, H., Wang, L. K., and Shuman, S. (2005) J. Biol. Chem. 280, 33707-33715
16. Zhu, H., and Shuman, S. (2006) J. Biol. Chem. 281, 13873-13881
17. Zhu, H., and Shuman, S. (2008) J. Biol. Chem. 283, 8331-8339
18. Stephanou, N. C., Gao, F., Bongiorno, P., Ehrt, S., Schnappinger, D., Shuman, S., and Glickman, M. S. (2007) J. Bacteriol. 189, 5237-5246
19. Augustin, M. A., Huber, R., and Kaiser, J. T. (2001) Nat. Struct. Biol. 8, 57-61
20. Ito, N., Nureki, O., Shirouzu, M., Yokoyama, S., and Hanaoka, F. (2003) Genes Cells 8, 913-923
21. Lao-Sirieix, S. H., Nookala, R. K., Roversi, P., Bell, S. D., and Pellegrini, L. (2005) Nat. Struct. Mol. Biol. 12, 1137-1144
22. Lipps, G., Weinzierl, A. O., von Scheven, G., Buchen, C., and Cramer, P. (2004) Nat. Struct. Mol. Biol. 11, 157-162
23. Garcia-Diaz, M., Bebenek, K., Krahn, J. M., Pedersen, L. C., and Kunkel, T. A. (2006) Cell 124, 331-342
24. Garcia-Diaz, M., Bebenek, K., Krahn, J. M., Blanco, L., Kunkel, T. A., and Pedersen, L. C. (2004) Mol. Cell 13, 561-572
25. Brissett, N. C., Pitcher, R. S., Juarez, R., Picher, A. J., Green, A. J., Dafforn, T. R., Fox, G. C., Blanco, L., and Doherty, A. J. (2007) Science 318, 456-459
26. Garcia-Diaz, M., Bebenek, K., Larrea, A. A., Havener, J. M., Perera, L., Krahn, J. M., Pedersen, L. C., Ramsden, D. A., and Kunkel, T. A. (2009) Nat. Struct. Mol. Biol. 16, 967-972
27. García-Díaz, M., Bebenek, K., Sabariegos, R., Domínguez, O., Rodríguez, J., Kirchhoff, T., García- Palomero, E., Picher, A. J., Juárez, R., Ruiz, J. F., Kunkel, T. A., and Blanco, L. (2002) J. Biol. Chem. 277, 13184-13191
28. Lee, J. W., Blanco, L., Zhou, T., Garcia-Diaz, M., Bebenek, K., Kunkel, T. A., Wang, Z., and Povirk, L. F. (2004) J. Biol. Chem. 279, 805-811
29. Walker, J. R., Corpina, R. A., and Goldberg, J. (2001) Nature 412, 607-614
30. Sinha, K. M., Unciuleac, M. C., Glickman, M. S., and Shuman, S. (2009) Genes Dev. 23, 1423-1437