Relationships between demography and gene flow and their importance for the conservation of tree populations in tropical forests under selective felling regimes

Conservation Genetics

Volumn 12, Issue 1, 2011, Pages 15-29

  Wernsdörfer, Holger ^a,b,c   Caron, Henri ^d,e   Gerber, Sophie ^d,e   Cornu, Guillaume ^a   Rossi, Vivien ^a   Mortier, Frédéric ^a   Gourlet Fleury, Sylvie ^a  

^a CIRAD   (France)

^b LERFoB   (France)

^c AGROPARISTECH   (France)

^d UMR 1202 BIOGECO   (France)

^e UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

Conservation; Forest management; Gene flow; Genetic diversity; Population dynamics; Simulation model

Indexed keywords

AUTOGAMY; CONSERVATION GENETICS; DEMOGRAPHY; ECOLOGICAL IMPACT; ECOLOGICAL MODELING; FOREST MANAGEMENT; GENE FLOW; GENETIC VARIATION; INBREEDING DEPRESSION; INDIVIDUAL VARIATION; MORTALITY; OUTCROSSING; POPULATION SIZE; REGENERATION; SELECTIVE LOGGING; SENSITIVITY ANALYSIS; SPECIES CONSERVATION; TROPICAL FOREST;

EID: 78651073065     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-009-9983-0     Document Type: Article

References (43)

1. André T, Lemes MR, Grogan J et al (2008) Post-logging loss of genetic diversity in a mahogany (Swietenia macrophylla King, Meliaceae) population in Brazilian Amazonia. For Ecol Manag 255: 340-345.
2. Asner GP, Knapp DE, Broadbent EN et al (2005) Selective logging in the Brazilian Amazon. Science 310: 480-482.
3. Caron H, Dutech C, Bandou E (1998) Variations spatiotemporelles du régime de reproduction de Dicorynia guianensis Amshoff (Caesalpiniaceae) en forêt guyanaise. Genet Sel Evol 30(Suppl 1): S153-S166.
4. Caron H, Dutech C, Bandou E (2004) Reproductive phenology and mating system of six tree species in Paracou stands. In: Gourlet-Fleury S, Guehl J-M, Laroussinie O (eds) Ecology and management of a Neotropical Rainforest. Elsevier, Paris, pp 149-159.
5. Cloutier D, Kanashiro M, Ciampi AY et al (2007) Impact of selective logging on inbreeding and gene dispersal in an Amazonian tree population of Carapa guianensis Aubl. Mol Ecol 16: 797-809.
6. Cornelius JP, Navarro CM, Wightman KE et al (2005) Is mahogany dysgenically selected? Environ Conserv 32: 129-139.
7. de Coligny F (2007) Efficient building of forestry modelling software with the Capsis methodology. In: Fourcaud T, Zhang XP (eds) Plant growth modeling and applications. Proceedings of PMA06. IEEE Computer Society, Los Alamitos, California, pp 216-222.
8. de Lacerda AEB, Kanashiro M, Sebbenn AM (2008) Effects of reduced impact logging on genetic diversity and spatial genetic structure of a Hymenaea courbaril population in the Brazilian Amazon Forest. For Ecol Manag 255: 1034-1043.
9. Degen B, Roubik DW (2004) Effects of animal pollination on pollen dispersal, selfing and effective population size of tropical trees: a simulation study. Biotropica 36: 165-179.
10. Degen B, Gregorius HR, Scholz F (1996) ECO-GENE, a model for simulation studies on the spatial and temporal dynamics of genetic structures of tree populations. Silvae Genet 45: 323-329.
11. Degen B, Blanc L, Caron H et al (2006) Impact of selective logging on genetic composition and demographic structure of four tropical tree species. Biol Conserv 131: 386-401.
12. Dessard H, Picard N, Pélissier R et al (2004) Spatial patterns of the most abundant tree species. In: Gourlet-Fleury S, Guehl J-M, Laroussinie O (eds) Ecology and management of a Neotropical Rainforest. Elsevier, Paris, pp 177-190.
13. Dreyfus P, Pichot C, de Coligny F et al (2005) Couplage de modèles de flux de gènes et de modèles de dynamique forestière. Actes BRG 5: 231-250.
14. Finkeldey R, Ziehe M (2004) Genetic implications of silvicultural regimes. For Ecol Manag 197: 231-244.
15. Gillies ACM, Navarro C, Lowe AJ et al (1999) Genetic diversity in Mesoamerican populations of mahogany (Swietenia macrophylla), assessed using RAPDs. Heredity 83: 722-732.
16. Gourlet-Fleury S (1997) Modélisation individuelle spatialement explicite de la dynamique d'un peuplement de forêt dense tropicale humide (dispositif de Paracou - Guyane française). Doctoral Thesis, Université Lyon 1, Villeurbanne, France.
17. Gourlet-Fleury S, Houllier F (2000) Modelling diameter increment in a lowland evergreen rain forest in French Guiana. For Ecol Manag 131: 269-289.
18. Gourlet-Fleury S, Guehl J-M, Laroussinie O (eds) (2004a) Ecology and management of a Neotropical Rainforest. Elsevier, Paris.
19. Gourlet-Fleury S, Ferry B, Molino JF et al (2004b) Experimental plots: key features. In: Gourlet-Fleury S, Guehl J-M, Laroussinie O (eds) Ecology and management of a Neotropical Rainforest. Elsevier, Paris, pp 3-30.
20. Gourlet-Fleury S, Cornu G, Jésel S et al (2005) Using models to predict recovery and assess tree species vulnerability in logged tropical forests: a case study from French Guiana. For Ecol Manag 209: 69-86.
21. Hufford KM, Hamrick JL (2003) Viability selection at three early life stages of the tropical tree, Platypodium elegans (Fabaceae, Papilionoideae). Evolution 57: 518-526.
22. Jennings SB, Brown ND, Boshier DH et al (2001) Ecology provides a pragmatic solution to the maintenance of genetic diversity in sustainably managed tropical rainforest. For Ecol Manag 154: 1-10.
23. Jésel S (2005) Ecologie et dynamique de la régénération de Dicorynia guianensis (Caesalpiniaceae) dans une forêt guyanaise. Doctoral Thesis, INA P-G, Paris, France.
24. Latouche-Hallé C, Ramboer A, Bandou E et al (2002) Isolation and characterization of microsatellite markers in the tropical tree species Dicorynia guianensis (Caesalpinaceae). Mol Ecol Notes 2: 228-230.
25. Latouche-Hallé C, Ramboer A, Bandou E et al (2003) Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population. Heredity 91: 181-190.
26. Latouche-Hallé C, Ramboer A, Bandou E et al (2004) Long-distance pollen flow and tolerance to selfing in a neotropical tree species. Mol Ecol 13: 1055-1064.
27. Loubry D (1993) Les paradoxes de l'Angélique (Dicorynia guianensis Amshoff): dissémination et parasitisme des graines avant dispersion chez un arbre anémochore de forêt guyanaise. Rev Ecol (Terre Vie) 48: 353-363.
28. Lourmas M, Kjellberg F, Dessard H et al (2007) Reduced density due to logging and its consequences on mating system and pollen flow in the African mahogany Entandrophragma cylindricum. Heredity 99: 151-160.
29. Lowe AJ, Boshier D, Ward M et al (2005) Genetic resource impacts of habitat loss and degradation; reconciling empirical evidence and predicted theory for neotropical trees. Heredity 95: 255-273.
30. Nei M (1972) Genetic distance between populations. Am Nat 106: 283-292.
31. Neuenschwander S, Hospital F, Guillaume F et al (2008) quantiNemo: an individual-based program to simulate quantitative traits with explicit genetic architecture in a dynamic metapopulation. Bioinformatics 24: 1552-1553.
32. Oostermeijer JGB, Luijten SH, den Nijs JCM (2003) Integrating demographic and genetic approaches in plant conservation. Biol Conserv 113: 389-398.
33. Pfrender ME, Spitze K, Hicks J et al (2000) Lack of concordance between genetic diversity estimates at the molecular and quantitative trait levels. Conserv Genet 1: 263-269.
34. Phillips PD, Thompson IS, Silva JNM et al (2004) Scaling up models of tree competition for tropical forest population genetics simulation. Ecol Model 180: 419-434.
35. Reed DH, Frankham R (2001) How closely correlated are molecular and quantitative measures of genetic variation? A meta-analysis. Evolution 55: 1095-1103.
36. Saltelli A, Tarantola S, Campolongo F et al (2004) Sensitivity analysis in practice. Wiley, Chichester.
37. Scofield DG, Schultz ST (2006) Mitosis, stature and evolution of plant mating systems: low-Φ and high-Φ plants. Proc R Soc B 273: 275-282.
38. Sebbenn AM, Degen B, Azevedo VCR et al (2008) Modelling the long-term impacts of selective logging on genetic diversity and demographic structure of four tropical tree species in the Amazon forest. For Ecol Manag 254: 335-349.
39. Silva MB, Kanashiro M, Ciampi AY et al (2008) Genetic effects of selective logging and pollen gene flow in a low-density population of the dioecious tropical tree Bagassa guianensis in the Brazilian Amazon. For Ecol Manag 255: 1548-1558.
40. van Gardingen PR, Valle D, Thompson I (2006) Evaluation of yield regulation options for primary forest in Tapajós National Forest, Brazil. For Ecol Manag 231: 184-195.
41. Ward M, Dick CW, Gribel R et al (2005) To self, or not to self...a review of outcrossing and pollen-mediated gene flow in neotropical trees. Heredity 95: 246-254.
42. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
43. Wernsdörfer H, Rossi V, Cornu G et al (2008) Impact of uncertainty in tree mortality on the predictions of a tropical forest dynamics model. Ecol Model 218: 290-306.