Scaling up models of tree competition for tropical forest population genetics simulation

Ecological Modelling

Volumn 180, Issue 2-3, 2004, Pages 419-434

  Phillips, P D ^a   Thompson, I S ^b   Silva, J N M ^b   Van Gardingen, P R ^c   Degen, B ^d  

^a YO24 1JJ ^*  (United Kingdom)

^b EMBRAPA AMAZÔNIA ORIENTAL   (Brazil)

^c UNIVERSITY OF EDINBURGH   (United Kingdom)

^d CIRAD   (France)

Author keywords

Competition; Eco Gene; Forest; Model SYMFOR; Population genetics; Scaling up; Tropical rain

Indexed keywords

COMPETITION (ECOLOGY); ECOLOGICAL MODELING; LOGGING (TIMBER); POPULATION GENETICS; SUSTAINABLE FORESTRY; TROPICAL FOREST;

EID: 4744341449     PISSN: 03043800     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecolmodel.2004.04.029     Document Type: Article

References (32)

1. Alder D., Silva J.N.M. An empirical cohort model for management of Terra Firme forest in the Brazilian Amazon. For. Ecol. Manage. 130:2000;141-157
2. Alder, D., Synott, T.J., 1992. Permanent sample plot techniques for mixed tropical forest. Tropical Forestry Papers No. 25. Oxford Forestry Institute, 124 pp.
3. Alvarez-Buylla E.R., Garcia-Barrios R., Lara-Moreno C., Martinez-Ramos M. Demographic and genetic models in conservation biology: applications and perspectives for tropical rain forest tree species. Annu. Rev. Ecol. Syst. 27:1996;387-421
4. Barrett, S.C.H., Kohn, J.R., 1991. Genetic and evolutionary consequences of small population size. In: Falk, D.A., Holsinger, K.E. (Eds.), Genetics and Conservation of Rare Plants. Oxford University Press, New York, pp. 3-30.
5. Biging G.S., Dobbertin M. A comparison of distance-dependent competition measures for height and basal area growth of individual conifer trees. For. Sci. 38:1992;695-720
6. Crawford T.J. The estimation of neigbhourood parameters for plant populations. Heredity. 52:1984;273-283
7. Degen, B., Scholz, F., 1996. Der Einsatz des Simulationsmodells ÖKO-GEN zur Erarbeitung von Entscheidungshilfen für eine nachhaltige Forstwirtschaftl. In: Müller-Starck, G. (Ed.), Biodiversität und nachhaltige Forstwirtschaft. Ecomed-Verlagsgesellschaft, Landsberg, pp. 284-299.
8. Degen B., Scholz F. Ecological genetics in forest ecosystems under stress as analysed by the simulation model Eco-Gene. Chemosphere. 36:1998;819-824
9. Degen B., Gregorius H.R., Scholz F. Eco-Gene, a model for simulation studies on the spatial and temporal dynamics of genetic structures of tree populations. Silvae Genetica. 45:1996;323-329
10. Degen, B., Roubik, D.W., Loveless, M.D., 2002. Impact of selective logging and forest fragmentation on the seed cohorts of an insect-pollinated tropical tree: a simulation study. In: Degen, B., Loveless, M.D., Kremer, A. (Eds.), Modelling and Experimental Research on Genetic Processes in Tropical and Temperate Forests. EMBRAPA, Belém, pp. 108-119.
11. Degen, B., Streiff, R., Scholz, F., Kremer, A., 1997. Analyzing the effects of regeneration regime on genetic diversity and inbreeding in oak populations by use of the simulation model Eco-Gene. In: Steiner, K.C. (Ed.), Diversity and Adaption in Oak Species. College of Agricultural Sciences, University Park, PA.
12. Degen B., Roubik D. Effects of animal pollination on pollen dispersal, self-pollination and effective population size of tropical trees: a simulation study. Biotropica. 36:2004;165-179
13. Dick C. Genetic rescue of remnant tropical trees by an alien pollinator. Proc. R. Soc. London B. 268:2001;2391-2397
14. Ek, A.R., Monserud, R.A., 1974. Trials with program FOREST: growth and reproduction simulation for mixed species even- or uneven-aged forest stands. In: Fries, J. (Ed.), Growth Models for Tree and Stand Simulation. Proceedings of the IUFRO Working Party S4.01-4 Meetings, 1973. Royal Coll. For., Stockholm. Res. Note 30, Dep. For. Yield Res., pp. 56-69.
15. Ford, E.D., Sorrensen, K.A., 1992. Theory and models of inter-plant competition as a spatial process. In: DeAngelis, D.L., Gross, L.J. (Eds.), Individual-based Models and Approaches in Ecology. Chapman & Hall, New York, pp. 363-407.
16. Gourlet-Fleury S. Competition indices in a tropical moist forest: trials on the silvicultural experimental plots of Paracou (French Guiana). Ann. Sci. For. 55(6):1998;623-653
17. Gourlet-Fleury S., Houllier F. Modelling diameter increment in a lowland evergreen rain forest in French Guiana. For. Ecol. Manage. 131:2000;269-289
18. Jennings S.B., Brown N.D., Boshier D.H., Whitmore T.C., Lopes J.D.C.A.: Ecology provides a pragmatic solution to the maintenance of genetic diversity in sustainably managed tropical rain forests. For. Ecol. Manage. 154:2001;1-10
19. Kanashiro, M., Thompson, I.S., Yared, J.A.G., Loveless, M.D., Coventry, P., Martins-da-Silva, R.C.V., Degen, B., Amaral, W., 2002. Improving conservation values of managed forests: the Dendrogene Project in the Brazilian Amazon, Unasylva 53. http://www.fao.org/DOCREP/004/Y3582E/Y3582E3500.htm.
20. Nason J.D., Herre E.A., Hamrick J.L. Paternity analysis of the breeding structure of strangler fig populations: evidence for substantial long-distance wasp dispersal. J. Biogeogr. 23:1996;501-512
21. Nason J.D., Herre E.A., Hamrick J.L. The breeding structure of a tropical keystone plant resource. Nature. 391:1998;685-687
22. Phillips P.D., Brash T.E., Yasman I., Subagyo S., van Gardingen P.R. An individual-based spatially explicit tree growth model for forests in East Kalimantan (Indonesian Borneo). Ecol. Model. 159:2003;1-26
23. Phillips P.D., de Azevedo C.P., Degen B., van Gardingen P.R., Thompson I.S., Silva J.N.M. An individual-based spatially explicit simulation model for strategic forest management planning in the eastern Amazon. Ecol. Model. 173(4):2004;335-354
24. Phillips, P.D., Khan, M.T., Singh, J., van Gardingen, P.R., 2002b. An ecological model for the management of natural forests derived from the Barama Company Limited plots in NW Guyana. SYMFOR technical Note Series No. 11. The University of Edinburgh, Edinburgh, 30 pp. http://www.symfor.org/technical/ index.html.
25. Phillips, P.D., van der Hout, P., Arets, E.J.M.M., Zagt, R.J., van Gardingen, P.R., 2002a. Modelling the natural forest processes using data from the Tropenbos plots at Pibiri, Guyana. SYMFOR Technical Note Series No. 9. The University of Edinburgh, Edinburgh, 25 pp. http://www.symfor.org/technical/ index.html.
26. Phillips, P.D., van Gardingen, P.R., 2001a. The SYMFOR framework for modelling the effects of silviculture on the growth and yield of tropical forests. In: Rennolls, K. (Ed.), Proceedings of the IUFRO 4.11 Conference on Forest Biometry, Modelling and Information Science, University of Greenwich, 25-29 June 2001, 12 pp. http://cms1.gre.ac.uk/conferences/iufro/proceedings/.
27. Phillips, P.D., van Gardingen, P.R., 2001b. The SYMFOR framework for individual-based spatial ecological and silvicultural forest models. SYMFOR Technical Note Series No. 8. The University of Edinburgh, Edinburgh, 22 pp. http://www.symfor.org/technical/index.html.
28. Silva J.N.M., de Carvalho J.O.P.D., Lopes J.D.C.A., Almeida B.F.D., Costa D.H.M., De Oliveira L.C.D., Vanclay J.K., Skovsgaard J.P. Growth and yield of a tropical rain forest in the Brazilian Amazon 13 years after logging. For. Ecol. Manage. 71:1995;267-274
29. Silva J.N.M., de Carvalho J.O.P., Lopes J.C.A., De Oliveira R.P., De Oliveira L.C. Growth and yield studies in the Tapajós region, Central Brazilian Amazon. Commonw. For. Rev. 75(4):1996;325-329
30. van Gardingen, P.R., Foody, G.M., Curran, P.J., 1997. Scaling-up: From Cell to Landscape. Cambridge University Press, Cambridge, UK.
31. White, G.M., Boshier, D.H., 2001. Fragmentation in Central American dry forests: genetic impacts on Swietenia humilis (Meliaceae). In: Young, A.G., Clark, G.M. (Eds.), Genetics, Demography and Viability of Fragmented Populations. Cambridge University Press, pp. 293-311.
32. Wright S. Isolation by distance under diverse systems of mating. Genetics. 31:1946;39-59