Lack of concordance between genetic diversity estimates at the molecular and quantitative-trait levels

Conservation Genetics

Volumn 1, Issue 3, 2000, Pages 263-269

  Pfrender, Michael E ^a,b   Spitze, Ken ^c   Hicks, Justin ^a   Morgan, Kendall ^a   Latta, Leigh ^a   Lynch, Michael ^a  

^a UNIVERSITY OF OREGON   (United States)

^b OREGON STATE UNIVERSITY   (United States)

^c Department of Biology   (United States)

Author keywords

Genetic diversity; Heritability; Heterozygosity; Microsatellites

Indexed keywords

DAPHNIA;

EID: 0000152746     PISSN: 15660621     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1011518125488     Document Type: Article

References (58)

1. Allendorf FW, Waples RS (1995) Conservation and genetics of salmonid fishes. In: Conservation Genetics: Case Histories from Nature (eds. Avise JC, Hamrick JL), pp. 238-280. Columbia University Press, New York.
2. Avise JC (1989) A role for molecular genetics in the recognition and conservation of endangered species. Trends Ecol. Evol., 4, 278-281.
3. Bonnell ML, Selander R (1974) Elephant seals: Genetic variation and near extinction. Science, 184, 908-909.
4. Briscoe DA, Malpica JM, Robertson A, Smith GJ, Frankham R, Banks RG, Barker JSF (1992) Rapid loss of genetic variation in large captive populations of Drosophila flies: implications for the genetic management of captive populations. Conserv. Biol., 6, 416-425.
5. Bryant EH, McCommas SA, Combs LM (1986) The effect of an experimental bottleneck upon quantitative genetic variation in the housefly. Amer. Nat., 136, 542-549.
6. Bryant EH, Meffert LM (1993) The effect of serial founder flush cycles on quantitative genetic variation in the house fly. Heredity, 70, 122-129.
7. Burger R, Wagner GP, Stettinger F (1989) How much heritable variation can be maintained in finite populations by mutation selection balance? Evolution, 43, 1748-1766.
8. Cheverud J, Routman E, Jaquish C, Tardif S, Peterson G, Belfiore N, Forman L (1994) Quantitative and molecular genetic variation in captive Cotton-top tamarins (Saguinus Oedipus). Conserv. Biol., 8, 95-105.
9. Ciofi C, Bruford MW (1999) Genetic structure and gene flow among Komodo dragon populations inferred by microsatellite loci analysis. Mol. Ecol., 8, S17-S30.
10. Coyne JA (1985) Genetic studies of three sibling species of Drosophila with relationship to theories of speciation. Gen. Res., 46, 169-192.
11. Falconer DS, Mackay TFC (1996) Introduction to Quantitative Genetics, 4th ed. Harlow, UK.
12. Gilbert DA, Packer C, Pusey AE, Stephens JC, O'Brien SJ (1991) Analytical DNA fingerprinting in lions: parentage, genetic diversity and kinship. J. of Hered., 82, 378-386.
13. Gillespie JH (1991) The Causes of Molecular Evolution. Oxford University Press, New York.
14. Goodnight CJ (1988) Epistasis and the effect of founder events on the additive genetic variance. Evolution, 42, 441-454.
15. Haig SM, Ballou JD, Casna NJ (1994) Identification of kin structure among Guam Rail founders: a comparison of pedigrees and DNA profiles. Mol. Ecol., 5, 109-119.
16. Haig SM, Ballou JD, Casna NJ (1995) Genetic identification of kin in Micronesian Kingfishers. J. of Hered., 86, 423-431.
17. Hebert PDN, Beaton MJ (1989). Methodologies for Allozyme Analysis Using Cellulose Acetate Electrophoresis. Helana Laboratories, Beaumont, TX.
18. Hedrick PW (1996) Conservation genetics and molecular techniques: a perspective. In: Molecular Genetic Approaches in Conservation (eds. Smith TB, Wayne RK), pp. 459-477. Oxford University Press, New York.
19. Henderson CR (1984) Applications of Linear Models in Animal Breeding. University of Guelph, Guelph.
20. Hill WG (1982) Rates of change in quantitative traits from fixation of new mutations. Proc. Natl. Acad. Sci., 79, 142-145.
21. Houle D (1989) The maintenance of polygenic variation in finite populations. Evolution, 43, 1767-1780.
22. Keightley PD, Hill WG (1992) Quantitative genetic variation in body size of mice from new mutations. Genetics, 131, 693-700.
23. Kimura M (1983) The Neutral Theory of Molecular Evolution. Cambridge University Press, New York.
24. Lande R (1975) The maintenance of genetic variability by mutation in a polygenic character with linked loci. Gen. Res., 26, 221-235.
25. Lande R (1981) The minimum number of genes contributing to quantitative variation between and within populations. Genetics, 99, 541-553.
26. Lande R, Barrowclough GF (1987) Effective population size, genetic variation, and their use in population management. In: Viable Populations for Conservation (ed. Soule M), pp. 87-123. Cambridge University Press, Cambridge.
27. Lande R, Shannon S (1996) The role of genetic variation in adaptation and population persistence in a changing environment. Evolution, 50, 434-437.
28. Lehman N, Pfrender ME, Morin PA, Crease TJ, Lynch M (1995) A hierarchical molecular phylogeny of the genus Daphnia. Mol. Phylogenet. Evol., 4, 395-407.
29. Lerner IM (1954) Genetic Homeostasis. Oliver and Boyd, Edinburgh.
30. Long AD, Lyman RF, Langley CH, Mackay TFC (1998) Two sites in the delta gene region contribute to naturally occurring variation in bristle number in Drosophila melanogaster. Genetics, 149, 999-1017.
31. López-Fanjul C, Guerra CJ, Garcia A (1989) Changes in the distribution of the genetic variance in a quantitative trait in small populations of Drosophila melanogaster. Génét. Sél. Evol. 21, 159-168.
32. López-Fanjul C, Villaverde (1989) Inbreeding increases genetic variation for viability in Drosophila melanogaster. Evolution, 43, 1800-1804.
33. Lyman RF, Mackay TFC (1998) Candidate quantitative trait loci and naturally occurring phenotypic variation for bristle number in Drosophila melanogaster: the delta-hairless region. Genetics, 149, 983-998.
34. Lynch M (1984) The limits to life history evolution in Daphnia. Evolution, 38, 465-482.
35. Lynch M (1985) Spontaneous mutations for life history characters in an obligate parthenogen. Evolution, 39, 804-818.
36. Lynch M (1987) The consequences of fluctuating selection for isozyme polymorphisms in Daphnia. Genetics, 115, 657-669.
37. Lynch M (1988) The rate of polygenic mutation. Gen. Res., 51, 137-148.
38. Lynch M (1996) A quantitative-genetic perspective on conservation issues. In: Conservation Genetics: Case Histories from Nature (eds. Avise JC, Hamrick JL), pp. 471-501. Chapman & Hall, New York.
39. Lynch M, Hill WG (1986) Phenotypic evolution and neutral mutation. Evolution, 40, 915-935.
40. Lynch M, Lande R (1993) Evolution and extinction in response to environmental change. In: Biotic Interactions and Global Change (eds. Kareiva PM, Kingsolver JG, Huey RB), pp. 234-250. Sinauer Assocs., Inc., Sunderland, MA.
41. Lynch M, Pfrender M, Spitze K, Lehman N, Hicks J, Allen D, Latta L, Ottene M, Bogues F, Colbourne J (1999) The quantitative and molecular genetic architecture of a subdivided species. Evolution, 53, 100-110.
42. Lynch M, Spitze K, Crease T (1989) The distribution of life-history variation in Daphnia pulex. Evolution, 43, 1724-1736.
43. Lynch M, Walsh B (1998) Genetics and Analysis of Quantitative Traits. Sinauer Assocs., Inc., Sunderland, MA.
44. Marmiroli N, Maestri E, Liviero L, Massari A, Malcevschi A, Monciardini P (1999) Application of genomics in assessing biodiversity in wild and cultivated barley. Mol. Ecol., 8, S95-S106.
45. Moritz C (1994) Defining 'Evolutionary Significant Units' for conservation. Trends Ecol. Evol., 9, 373-375.
46. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
47. O'Brien SJ, Roelke ME, Marker L, Newman A, Winkler CA, Meltzer D, Colly L, Evermann JF, Bush M, Wildt DE (1985) Genetic basis for species vulnerability in the cheetah. Science, 227, 1428-1434.
48. Ritland K (1990) Gene identity and the genetic demography of plant populations. In: Plant Populations Genetics, Breeding, and Genetic Resources (eds. Brown AHD, Clegg MT, Kahler AL, Weir BA), pp. 181-190. Sinauer Assoc., Inc., Sunderland, MA.
49. Robertson A (1952) The effect of inbreeding on variation due to recessive genes. Genetics, 37, 189-207.
50. Soule M (1981) Allometric variation. 1. The theory and some consequences. Am. Nat., 120, 751-764.
51. Spitze K (1993) Population structure in Daphnia obtusa: quantitative genetic and allozyme variation. Genetics, 135, 367-374.
52. Storfer A (1996) Quantitative genetics: a promising approach for the assessment of genetic variation in endangered species. Trends Ecol. Evol., 11, 343-348.
53. Waldmann P, Andersson S (1998) Comparison of quantitative genetic variation and allozyme diversity within and between populations of Scabiosa canescens and S. columbaria. Heredity, 81, 79-86.
54. Waples RS (1991) Pacific salmon, Oncorhyncus spp., and the definition of 'species' under the Endangered Species Act. Mar. Fish. Rev., 53, 11-22.
55. Wayne RK (1995) Conservation genetics in the canidae. In: Conservation Genetics: Case Histories from Nature (eds. Avise JC, Hamrick JL), pp. 75-118. Columbia University Press, New York.
56. Wayne RK, Gilbert DA, Eisenhawer A, Lehman N, Hansen K, Girman D, Peterson RO, Mech LD, Gogan PJP, Seal US, Krumenaker RJ (1991) Conservation genetics of the endangered Isle Royale gray wolf. Conserv. Biol., 5, 41-51.
57. Willis JH, Coyne JA, Kirkpatrick M (1991) Can one predict the evolution of quantitative characters without genetics? Evolution, 45, 441-444.
58. Wright S (1968) Evolution and the Genetics of Populations, Vol. 1. Genetics and Biometric Foundations. University Chicago Press, Chicago, IL.