Nuclear and chloroplast genetic structure indicate fine-scale spatial dynamics in a neotropical tree population

Heredity

Volumn 91, Issue 2, 2003, Pages 181-190

  Latouche Halle C ^a   Ramboer, A ^a   Bandou, E ^a   Caron, H ^a   Kremer, A ^a  

^a CEMAGREF   (France)

Author keywords

Dicorynia guianensis; Gene flow; Genetic differentiation; Microsatellites; Spatial analysis; Tropical tree

Indexed keywords

GENE FLOW; GENETIC STRUCTURE; POPULATION GENETICS; SPATIAL ANALYSIS; TREE; TROPICAL FOREST;

CELL NUCLEUS; CHLOROPLASTS; COHORT STUDIES; DNA, PLANT; FRENCH GUIANA; GENETIC MARKERS; POLLEN; POPULATION DYNAMICS; SEEDS; TREES; VARIATION (GENETICS);

FRENCH GUIANA;

DICORYNIA GUIANENSIS; EMBRYOPHYTA;

EID: 0043234484     PISSN: 0018067X     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.hdy.6800296     Document Type: Article

References (43)

1. Aldrich PR, Hamrick JL, Chavarriaga P, Kochert G (1998). Microsatellite analysis of demographic genetic structure in fragmented populations of the tropical tree Symphonia globulifera. Mol Ecol 7: 933-944.
2. Bariteau M (1993). La régénération naturelle avant et après exploitation sur le dispositif d'expérimentation sylvicole de Paracou en Guyane Française. PhD Thesis, University of Paris VI, Paris.
3. Bena P (1960). Essences forestières de Guyane, Bureau agricole et forestier guyanais, Imprimerie nationale: Paris.
4. Besag J (1977a). Contribution to the discussion of Dr Ripley's paper. JR Stat Soc B39: 193-195.
5. Besag J (1977b). Simple Monte Carlo tests for spatial pattern. Appl Statist 26: 327-333.
6. Cabrera-Gaillard C, Gignoux J (1990). Répartitions spatiales et sylviculture en forêt guyanaise. Internal report, CIRAD Kourou, p 19.
7. Caron H, Dumas S, Marque G, Messier C, Bandou E, Petit RJ et al (2000). Spatial and temporal distribution of chloroplast DNA polymorphism in a tropical tree species. Mol Ecol 9: 1089-1098.
8. Caron H, Dutech C, Bandou E (1998). Spatio-temporal variation in the mating system of Dicorynia guianensis Amshoff (Caesalpiniaceae) in Guianan forest [French]. Genet Sel Evol 30: S153-S166.
9. Chase M, Kesseli R, Bawa K (1996). Microsatellite markers for population and conservation genetics of tropical trees. Am J Bot 83: 51-57.
10. Degen B, Petit R, Kremer A (2001). SGS-Spatial Genetic Software: a computer program for analysis of spatial genetic and phenotypic structures of individuals and populations. J Hered 92: 447-449.
11. Doyle JJ, Doyle JL (1990). Isolation of plant DNA from fresh tissue. Focus 12: 13-15.
12. Dumolin S, Demesure B, Petit RJ (1995). Inheritance of chloroplast and mitochondrial genomes in pedunculate oak investigated with an efficient PCR method. Theor Appl Genet 91: 1253-1256.
13. Dumolin-Lapègue S, Pemonge MH, Petit RJ (1997a). An enlarged set of consensus primers for the study of organelle DNA in plants. Mol Ecol 6: 393-397.
14. Dumolin-Lapègue S, Pemonge MH, Petit RJ (1997b). Association between chloroplast and mitochondrial lineages in oaks. Mol Biol Evol 15: 1321-1331.
15. Dutech C (2001). Diversité génétique et dynamique de la forêt tropicale humide: le cas d'une espèce ligneuse guyanaise, Vouacapoua Americana (Caesalpiniaceae). PhD Thesis, Uniyersité de Montpellier II.
16. El-Mousadik A, Petit RJ (1996). High level of genetic differentiation for allelic richness among populations of the argan tree (Argania spinosa (L.) Skeels) endemic to Morocco. Theor Appl Genet 92: 832-839.
17. Ennos RA (1994). Estimating the relative rates of pollen and seed migration among plant populations. Heredity 72: 250-259.
18. Eymond V (1992) Régénération naturelle de l'angélique: Dicorynia guianensis sur le dispositif sylvicole de Paracou (Guyane française). Master Thesis ENGREF, Montpellier.
19. Forget PM (1988). Dissé→mination et régénération naturelle de huit espèces d'arbres en forêt guyanaise. PhD Thesis, University of Paris VI, Paris.
20. Goreaud F, Courbaud B, Collinet F (1997). Spatial structure analysis applied to modelling of forest dynamics: a few examples. In: Amaro A, Tomé M (eds) Proceedings of the IUFRO Workshop: Empirical and Process Based Models for Forest Tree and Stand Growth Simulation, Salamandra Press: Lisbon, Portugal. pp 155-172.
21. Goudet J (1995). FSTAT (Version 1.2): a computer program to calculate F-statistics. J Hered 86: 485-486.
22. Goudet J, Raymond M, Meeus TD, Rousset F. (1996). Testing differentiation in diploid populations. Genetics 144: 1933-1940.
23. Guo SW, Thompson EA (1992). Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48: 361-372.
24. Haldane JBS (1954). An exact test for randomness of mating. J Genet 52: 631-635.
25. Kokou K (1992). Contribution à l'étude du déterminisme écologique de la répartition spatiale de l'Angélique (Dicorynia guianensis) en forêt guyanaise. Master Thesis, ENGREF and Université Bordeaux II.
26. Latouche-Hallé C, Ramboer A, Bandou E, Caron H, Decroocq S (2002). Isolation and characterization of microsatellite markers in the tropical tree species Dicorynia guianensis (Caesalpinaceae). Mol Ecol Notes 2: 228-230.
27. Latouche-Hallé C, Ramboer A, Bandou E, Caron H, Kremer A (2003). Long distance pollen flow and heterogeneous male mating success in a neotropical tree species. (submitted).
28. Le Corre VI, Machon N, Petit RJ, Kremer A (1997). Colonization with long-distance seed dispersal and genetic structure of maternally inherited genes in forest trees: a simulation study. Genet Res 69: 117-125.
29. Meer PJ, van de Sterck FJ, Bongers F (1998). Tree seedling performance in canopy gaps in a tropical rain forest at Nouragues, French Guiana. J Trop Ecol 14: 119-137.
30. Murawski DA (1995). Reproductive biology and genetics of tropical trees from a canopy perspective. In: Lowman MD, Nadkarni NM (eds) Forest Canopies, Academic Press, San Diego, CA, pp 457-493.
31. Nei M (1987). Molecular Evolutionary Genetics. Columbia University Press: New York.
32. Pelissier R, Goreaud F (2001). A practical approach to the study of spatial structure in simple cases of heterogeneous vegetation. J Veg Sci 12: 99-108.
33. Pons O, Petit RJ (1995). Estimation, variance and optimal sampling of gene diversity. I. Haploid locus. Theor Appl Genet 90: 462-470.
34. Raymond M, Rousset F (1995). An exact test for population differentiation. Evolution 49: 1280-1283.
35. Ripley BD (1976). The second-order analysis of stationary point process. J Appl Probab 13: 255-266.
36. Sabatier D, Prevost MF (1990). Quelques données sur la composition floristique et la diversité des peuplements forestiers de Guyane Française. Bois For Trop, Spécial Guyane 219: 31-55.
37. Schmitt L, Bariteau M (1990). Management of the forest ecosystem of French Guiana: study of growth and natural regeneration in the Paracou research area. [French]. Bois For Trop 220: 3-23.
38. Sokal RR, Rohlf FJ (1994). Biometry, 3rd edn. Freeman: San Francisco, CA
39. Streiff R, Ducousso A, Lexer C, Steinkellner H, Gloessl J, Kremer A (1999). Pollen dispersal inferred from paternity analysis in a mixed oak stand of Quercus robur L. and Q. petraea (Matt.) Liebl. Mol Ecol 8: 831-841.
40. Streiff R, Labbe T, Bacilieri R, Steinkellner H, Glossl J, Kremer A (1998). Within-population genetic structure in Quercus robur L. and Quercus petraea (Matt.) Liebl. assessed with isozymes and microsatellites. Mol Ecol 7: 317-328.
41. Thioulouse J, Chessel D, Doledec S, Olivier JM (1997). ADE-4: a multivariate analysis and graphical display software. Statist and Comput 7: 75-83.
42. Weir BS, Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370.
43. White G, Powell W (1997). Isolation and characterization of microsatellite loci in Swietenia humilis (Meliaceae): an endangered tropical hardwood species. Mol Ecol 6: 851-860.