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Volumn 102, Issue 1, 2011, Pages 69-77

A heuristic model for paradoxical effects of biotin starvation on carbon metabolism genes in the presence of abundant glucose

Author keywords

oxidation; Adiponectins; Adr1; AMPK; Anaplerosis; Aspartate; ATP; Biotin; Caenorhabditis elegans; Carbon metabolism; Cat8; ChREBP; Fatty acid; Fermentation; Gluconeogenesis; Glucose; Glycolysis; HXK2; Insulin pathway; Insulin resistance; JAK STAT pathway; Microarrays; Mig1; MTORC1; NAMPT; Nematode; PGC 1 ; Pyruvate carboxylase deficiency; Rat; Rattus norvegicus; Rgt1; Saccharomyces cerevisiae; Sip4; Snf1; SREBP 1c; Yeast

Indexed keywords

ADENYLATE KINASE; ADIPONECTIN; ADIPONECTIN RECEPTOR 1; BINDING PROTEIN; BIOTIN; CARBOHYDRATE RESPONSIVE ELEMENT BINDING PROTEIN; CARNITINE PALMITOYLTRANSFERASE I; CELL NUCLEUS RECEPTOR; GLUCOSE; HEXOKINASE; HEXOKINASE 2; JANUS KINASE; MAMMALIAN TARGET OF RAPAMYCIN; NICOTINAMIDE MONONUCLEOTIDE PHOSPHORIBOSYL TRANSFERASE; NUCLEAR RECEPTOR RESPONSE ELEMENT 1; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA COACTIVATOR 1ALPHA; PROTEIN CAT8; PROTEIN MIG1; PROTEIN RGT1; PROTEIN SIP4; REGULATOR PROTEIN; STAT PROTEIN; STEROL REGULATORY ELEMENT BINDING PROTEIN 1C; TRANSFERASE; TRICARBOXYLIC ACID; UNCLASSIFIED DRUG;

EID: 78650914755     PISSN: 10967192     EISSN: 10967206     Source Type: Journal    
DOI: 10.1016/j.ymgme.2010.08.021     Document Type: Article
Times cited : (15)

References (53)
  • 1
    • 77956072015 scopus 로고    scopus 로고
    • Biotin starvation with adequate glucose provision causes paradoxical changes on fuel metabolism gene expression, similar in rat (Rattus norvegicus), nematode (Caenorhabditis elegans) and yeast (Saccharomyces cerevisiae)
    • Ortega-Cuellar D., Hernandez-Mendoza A., Moreno-Arriola E., Carvajal-Aguilera K., Perez-Vazquez V., Gonzalez-Alvarez R., Velazquez-Arellano A. Biotin starvation with adequate glucose provision causes paradoxical changes on fuel metabolism gene expression, similar in rat (Rattus norvegicus), nematode (Caenorhabditis elegans) and yeast (Saccharomyces cerevisiae). J. Nutrigenet. Nutrigenomics 2010, 3:18-30.
    • (2010) J. Nutrigenet. Nutrigenomics , vol.3 , pp. 18-30
    • Ortega-Cuellar, D.1    Hernandez-Mendoza, A.2    Moreno-Arriola, E.3    Carvajal-Aguilera, K.4    Perez-Vazquez, V.5    Gonzalez-Alvarez, R.6    Velazquez-Arellano, A.7
  • 2
    • 0014057187 scopus 로고
    • The role of biotin-dependent carboxylations in biosynthetic reactions
    • Lynen F. The role of biotin-dependent carboxylations in biosynthetic reactions. Biochem. J. 1967, 102:381-400.
    • (1967) Biochem. J. , vol.102 , pp. 381-400
    • Lynen, F.1
  • 4
    • 0024349661 scopus 로고
    • The E. coli bio operon: transcriptional repression by an essential protein modification enzyme
    • Cronan J.E. The E. coli bio operon: transcriptional repression by an essential protein modification enzyme. Cell 1989, 58:427-429.
    • (1989) Cell , vol.58 , pp. 427-429
    • Cronan, J.E.1
  • 5
    • 0025836220 scopus 로고
    • Transcriptional regulation of the glucokinase gene by biotin in starved rats
    • Chauhan J., Dakshinamurti K. Transcriptional regulation of the glucokinase gene by biotin in starved rats. J. Biol. Chem. 1991, 266:10035-10038.
    • (1991) J. Biol. Chem. , vol.266 , pp. 10035-10038
    • Chauhan, J.1    Dakshinamurti, K.2
  • 6
    • 0021223572 scopus 로고
    • Effects of biotin upon the intracellular level of cGMP and the activity of glucokinase in cultured rat hepatocytes
    • Spence J.T., Koudelka A.P. Effects of biotin upon the intracellular level of cGMP and the activity of glucokinase in cultured rat hepatocytes. J. Biol. Chem. 1984, 259:6393-6396.
    • (1984) J. Biol. Chem. , vol.259 , pp. 6393-6396
    • Spence, J.T.1    Koudelka, A.P.2
  • 7
    • 34948898610 scopus 로고    scopus 로고
    • Biotin deficiency affects both synthesis and degradation of pyruvate carboxylase in rat primary hepatocyte cultures
    • Rodríguez-Fuentes N., López-Rosas I., Román-Cisneros G., Velázquez-Arellano A. Biotin deficiency affects both synthesis and degradation of pyruvate carboxylase in rat primary hepatocyte cultures. Mol. Genet. Metab. 2008, 92:222-228.
    • (2008) Mol. Genet. Metab. , vol.92 , pp. 222-228
    • Rodríguez-Fuentes, N.1    López-Rosas, I.2    Román-Cisneros, G.3    Velázquez-Arellano, A.4
  • 9
    • 1042268861 scopus 로고    scopus 로고
    • Mitochondrial complex I mutations in Caenorhabditis elegans produce cytochrome c oxidase deficiency, oxidative stress and vitamin-responsive lactic acidosis
    • Grad L.I., Lemire B.D. Mitochondrial complex I mutations in Caenorhabditis elegans produce cytochrome c oxidase deficiency, oxidative stress and vitamin-responsive lactic acidosis. Hum. Mol. Genet. 2004, 13:303-314.
    • (2004) Hum. Mol. Genet. , vol.13 , pp. 303-314
    • Grad, L.I.1    Lemire, B.D.2
  • 10
    • 33646364541 scopus 로고    scopus 로고
    • Glycolytic sequence and respiration of Debaryomyces hansenii as compared to Saccharomyces cerevisiae
    • Sanchez N.S., Calahorra M., Gonzalez-Hernandez J.C., Pena A. Glycolytic sequence and respiration of Debaryomyces hansenii as compared to Saccharomyces cerevisiae. Yeast 2006, 23:361-374.
    • (2006) Yeast , vol.23 , pp. 361-374
    • Sanchez, N.S.1    Calahorra, M.2    Gonzalez-Hernandez, J.C.3    Pena, A.4
  • 11
    • 0001488996 scopus 로고
    • Ethanol
    • VCH Verlagsgesellschaft, H.U. Bergmeyer (Ed.)
    • Bergmeyer H.U., Beutler H.O. Ethanol. Methods in Enzymatic Analysis 1984, vol. VI:598-606. VCH Verlagsgesellschaft. 3rd edn. H.U. Bergmeyer (Ed.).
    • (1984) Methods in Enzymatic Analysis , vol.6 , pp. 598-606
    • Bergmeyer, H.U.1    Beutler, H.O.2
  • 12
    • 0022375606 scopus 로고
    • Contribution of the translocator of adenine nucleotides and the ATP synthase to the control of oxidative phosphorylation and arsenylation in liver mitochondria
    • Moreno-Sanchez R. Contribution of the translocator of adenine nucleotides and the ATP synthase to the control of oxidative phosphorylation and arsenylation in liver mitochondria. J. Biol. Chem. 1985, 260:12554-12560.
    • (1985) J. Biol. Chem. , vol.260 , pp. 12554-12560
    • Moreno-Sanchez, R.1
  • 13
    • 0025362399 scopus 로고
    • A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae
    • Order
    • Schmitt M.E., Brown T.A., Trumpower B.L. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res. 1990, 18:3091-3092. Order.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3091-3092
    • Schmitt, M.E.1    Brown, T.A.2    Trumpower, B.L.3
  • 14
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method
    • Livak K.J., Schmittgen T.D. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. Methods 2001, 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 16
    • 0028322197 scopus 로고
    • Regulation of pyruvate carboxylase isozyme (PYC1, PYC2) gene expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth
    • Brewster N.K., Val D.L., Walker M.E., Wallace J.C. Regulation of pyruvate carboxylase isozyme (PYC1, PYC2) gene expression in Saccharomyces cerevisiae during fermentative and nonfermentative growth. Arch. Biochem. Biophys. 1994, 311:62-71.
    • (1994) Arch. Biochem. Biophys. , vol.311 , pp. 62-71
    • Brewster, N.K.1    Val, D.L.2    Walker, M.E.3    Wallace, J.C.4
  • 17
    • 34648828532 scopus 로고    scopus 로고
    • AMP-activated/SNF1 protein kinases: conserved guardians of cellular energy
    • Hardie D.G. AMP-activated/SNF1 protein kinases: conserved guardians of cellular energy. Nat. Rev. Mol. Cell Biol. 2007, 8:774-785.
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 774-785
    • Hardie, D.G.1
  • 18
    • 10644282295 scopus 로고    scopus 로고
    • The AMP-activated protein kinase AAK-2 links energy levels and insulin-like signals to lifespan in C. elegans
    • Apfeld J., O'Connor G., McDonagh T., DiStefano P.S., Curtis R. The AMP-activated protein kinase AAK-2 links energy levels and insulin-like signals to lifespan in C. elegans. Genes Dev. 2004, 18:3004-3009.
    • (2004) Genes Dev. , vol.18 , pp. 3004-3009
    • Apfeld, J.1    O'Connor, G.2    McDonagh, T.3    DiStefano, P.S.4    Curtis, R.5
  • 19
    • 60749127330 scopus 로고    scopus 로고
    • Glucose regulates transcription in yeast through a network of signaling pathways
    • Zaman S., Lippman S.I., Schneper L., Slonim N., Broach J.R. Glucose regulates transcription in yeast through a network of signaling pathways. Mol. Syst. Biol. 2009, 5:245.
    • (2009) Mol. Syst. Biol. , vol.5 , pp. 245
    • Zaman, S.1    Lippman, S.I.2    Schneper, L.3    Slonim, N.4    Broach, J.R.5
  • 20
    • 0030293885 scopus 로고    scopus 로고
    • Glucose repression/derepression in budding yeast: SNF1 protein kinase is activated by phosphorylation under derepressing conditions, and this correlates with a high AMP:ATP ratio
    • Wilson W.A., Hawley S.A., Hardie D.G. Glucose repression/derepression in budding yeast: SNF1 protein kinase is activated by phosphorylation under derepressing conditions, and this correlates with a high AMP:ATP ratio. Curr. Biol. 1996, 6:1426-1434.
    • (1996) Curr. Biol. , vol.6 , pp. 1426-1434
    • Wilson, W.A.1    Hawley, S.A.2    Hardie, D.G.3
  • 23
    • 0036711553 scopus 로고    scopus 로고
    • New perspectives in the regulation of hepatic glycolytic and lipogenic genes by insulin and glucose: a role for the transcription factor sterol regulatory element binding protein-1c
    • Foufelle F., Ferre P. New perspectives in the regulation of hepatic glycolytic and lipogenic genes by insulin and glucose: a role for the transcription factor sterol regulatory element binding protein-1c. Biochem. J. 2002, 366:377-391.
    • (2002) Biochem. J. , vol.366 , pp. 377-391
    • Foufelle, F.1    Ferre, P.2
  • 24
    • 30644460897 scopus 로고    scopus 로고
    • Insulin regulation of glucokinase gene expression: evidence against a role for sterol regulatory element binding protein 1 in primary hepatocytes
    • Gregori C., Guillet-Deniau I., Girard J., Decaux J.F., Pichard A.L. Insulin regulation of glucokinase gene expression: evidence against a role for sterol regulatory element binding protein 1 in primary hepatocytes. FEBS Lett. 2006, 580:410-414.
    • (2006) FEBS Lett. , vol.580 , pp. 410-414
    • Gregori, C.1    Guillet-Deniau, I.2    Girard, J.3    Decaux, J.F.4    Pichard, A.L.5
  • 27
    • 38449087713 scopus 로고    scopus 로고
    • ChREBP, a transcriptional regulator of glucose and lipid metabolism
    • Postic C., Dentin R., Denechaud P.D., Girard J. ChREBP, a transcriptional regulator of glucose and lipid metabolism. Annu. Rev. Nutr. 2007, 27:179-192.
    • (2007) Annu. Rev. Nutr. , vol.27 , pp. 179-192
    • Postic, C.1    Dentin, R.2    Denechaud, P.D.3    Girard, J.4
  • 28
    • 33750684953 scopus 로고    scopus 로고
    • Role of insulin, adipocyte hormones, and nutrient-sensing pathways in regulating fuel metabolism and energy homeostasis: a nutritional perspective of diabetes, obesity, and cancer
    • Marshall S. Role of insulin, adipocyte hormones, and nutrient-sensing pathways in regulating fuel metabolism and energy homeostasis: a nutritional perspective of diabetes, obesity, and cancer. Sci. STKE 2006, 2006:re7.
    • (2006) Sci. STKE , vol.2006
    • Marshall, S.1
  • 29
    • 0037237117 scopus 로고    scopus 로고
    • C. elegans: a model for exploring the genetics of fat storage
    • McKay R.M., McKay J.P., Avery L., Graff J.M. C. elegans: a model for exploring the genetics of fat storage. Dev. Cell 2003, 4:131-142.
    • (2003) Dev. Cell , vol.4 , pp. 131-142
    • McKay, R.M.1    McKay, J.P.2    Avery, L.3    Graff, J.M.4
  • 30
    • 19344363119 scopus 로고    scopus 로고
    • Monomethyl branched-chain fatty acids play an essential role in Caenorhabditis elegans development
    • Kniazeva M., Crawford Q.T., Seiber M., Wang C.Y., Han M. Monomethyl branched-chain fatty acids play an essential role in Caenorhabditis elegans development. PLoS Biol. 2004, 2:E257.
    • (2004) PLoS Biol. , vol.2
    • Kniazeva, M.1    Crawford, Q.T.2    Seiber, M.3    Wang, C.Y.4    Han, M.5
  • 31
    • 43049121395 scopus 로고    scopus 로고
    • Glucose restriction inhibits skeletal myoblast differentiation by activating SIRT1 through AMPK-mediated regulation of Nampt
    • Fulco M., Cen Y., Zhao P., Hoffman E.P., McBurney M.W., Sauve A.A., Sartorelli V. Glucose restriction inhibits skeletal myoblast differentiation by activating SIRT1 through AMPK-mediated regulation of Nampt. Dev. Cell 2008, 14:661-673.
    • (2008) Dev. Cell , vol.14 , pp. 661-673
    • Fulco, M.1    Cen, Y.2    Zhao, P.3    Hoffman, E.P.4    McBurney, M.W.5    Sauve, A.A.6    Sartorelli, V.7
  • 33
    • 0036864358 scopus 로고    scopus 로고
    • Regulation of fatty acid synthesis and oxidation by the AMP-activated protein kinase
    • Hardie D.G., Pan D.A. Regulation of fatty acid synthesis and oxidation by the AMP-activated protein kinase. Biochem. Soc. Trans. 2002, 30:1064-1070.
    • (2002) Biochem. Soc. Trans. , vol.30 , pp. 1064-1070
    • Hardie, D.G.1    Pan, D.A.2
  • 34
    • 0028094488 scopus 로고
    • Transcriptional regulation of liver phosphoenolpyruvate carboxykinase by biotin in diabetic rats
    • Dakshinamurti K., Li W. Transcriptional regulation of liver phosphoenolpyruvate carboxykinase by biotin in diabetic rats. Mol. Cell. Biochem. 1994, 132:127-132.
    • (1994) Mol. Cell. Biochem. , vol.132 , pp. 127-132
    • Dakshinamurti, K.1    Li, W.2
  • 35
    • 64549127790 scopus 로고    scopus 로고
    • PGC-1alpha, SIRT1 and AMPK, an energy sensing network that controls energy expenditure
    • Canto C., Auwerx J. PGC-1alpha, SIRT1 and AMPK, an energy sensing network that controls energy expenditure. Curr. Opin. Lipidol. 2009, 20:98-105.
    • (2009) Curr. Opin. Lipidol. , vol.20 , pp. 98-105
    • Canto, C.1    Auwerx, J.2
  • 36
    • 0034521931 scopus 로고    scopus 로고
    • Transgenic studies of fatty acid oxidation gene expression in nonobese diabetic mice
    • Kurtz D.M., Tian L., Gower B.A., Nagy T.R., Pinkert C.A., Wood P.A. Transgenic studies of fatty acid oxidation gene expression in nonobese diabetic mice. J. Lipid Res. 2000, 41:2063-2070.
    • (2000) J. Lipid Res. , vol.41 , pp. 2063-2070
    • Kurtz, D.M.1    Tian, L.2    Gower, B.A.3    Nagy, T.R.4    Pinkert, C.A.5    Wood, P.A.6
  • 39
    • 44449165370 scopus 로고    scopus 로고
    • Intracellular mechanisms of metabolism regulation: the role of signaling via the mammalian target of rapamycin pathway and other routes
    • Flati V., Pasini E., D'Antona G., Speca S., Toniato E., Martinotti S. Intracellular mechanisms of metabolism regulation: the role of signaling via the mammalian target of rapamycin pathway and other routes. Am. J. Cardiol. 2008, 101:16E-21E.
    • (2008) Am. J. Cardiol. , vol.101
    • Flati, V.1    Pasini, E.2    D'Antona, G.3    Speca, S.4    Toniato, E.5    Martinotti, S.6
  • 41
    • 0034976004 scopus 로고    scopus 로고
    • The translational inhibitor 4E-BP is an effector of PI(3)K/Akt signalling and cell growth in Drosophila
    • Miron M., Verdu J., Lachance P.E., Birnbaum M.J., Lasko P.F., Sonenberg N. The translational inhibitor 4E-BP is an effector of PI(3)K/Akt signalling and cell growth in Drosophila. Nat. Cell Biol. 2001, 3:596-601.
    • (2001) Nat. Cell Biol. , vol.3 , pp. 596-601
    • Miron, M.1    Verdu, J.2    Lachance, P.E.3    Birnbaum, M.J.4    Lasko, P.F.5    Sonenberg, N.6
  • 43
    • 0031810672 scopus 로고    scopus 로고
    • Yeast carbon catabolite repression
    • Gancedo J.M. Yeast carbon catabolite repression. Microbiol. Mol. Biol. Rev. 1998, 62:334-361.
    • (1998) Microbiol. Mol. Biol. Rev. , vol.62 , pp. 334-361
    • Gancedo, J.M.1
  • 45
    • 66249108601 scopus 로고    scopus 로고
    • Understanding the Warburg effect: the metabolic requirements of cell proliferation
    • Vander Heiden M.G., Cantley L.C., Thompson C.B. Understanding the Warburg effect: the metabolic requirements of cell proliferation. Science (New York, NY) 2009, 324:1029-1033.
    • (2009) Science (New York, NY) , vol.324 , pp. 1029-1033
    • Vander Heiden, M.G.1    Cantley, L.C.2    Thompson, C.B.3
  • 47
    • 0027074887 scopus 로고
    • Expression of yeast hexokinase in pancreatic beta cells of transgenic mice reduces blood glucose, enhances insulin secretion, and decreases diabetes
    • Epstein P.N., Boschero A.C., Atwater I., Cai X., Overbeek P.A. Expression of yeast hexokinase in pancreatic beta cells of transgenic mice reduces blood glucose, enhances insulin secretion, and decreases diabetes. Proc. Natl. Acad. Sci. U. S. A. 1992, 89:12038-12042.
    • (1992) Proc. Natl. Acad. Sci. U. S. A. , vol.89 , pp. 12038-12042
    • Epstein, P.N.1    Boschero, A.C.2    Atwater, I.3    Cai, X.4    Overbeek, P.A.5
  • 48
    • 0035339662 scopus 로고    scopus 로고
    • The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae
    • Rodriguez A., De La Cera T., Herrero P., Moreno F. The hexokinase 2 protein regulates the expression of the GLK1, HXK1 and HXK2 genes of Saccharomyces cerevisiae. Biochem. J. 2001, 355:625-631.
    • (2001) Biochem. J. , vol.355 , pp. 625-631
    • Rodriguez, A.1    De La Cera, T.2    Herrero, P.3    Moreno, F.4
  • 49
    • 52049087373 scopus 로고    scopus 로고
    • Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1
    • Bonander N., Ferndahl C., Mostad P., Wilks M.D., Chang C., Showe L., Gustafsson L., Larsson C., Bill R.M. Transcriptome analysis of a respiratory Saccharomyces cerevisiae strain suggests the expression of its phenotype is glucose insensitive and predominantly controlled by Hap4, Cat8 and Mig1. BMC Genomics 2008, 9:365.
    • (2008) BMC Genomics , vol.9 , pp. 365
    • Bonander, N.1    Ferndahl, C.2    Mostad, P.3    Wilks, M.D.4    Chang, C.5    Showe, L.6    Gustafsson, L.7    Larsson, C.8    Bill, R.M.9
  • 50
    • 33751191872 scopus 로고    scopus 로고
    • Nitrogen availability and TOR regulate the Snf1 protein kinase in Saccharomyces cerevisiae
    • Orlova M., Kanter E., Krakovich D., Kuchin S. Nitrogen availability and TOR regulate the Snf1 protein kinase in Saccharomyces cerevisiae. Eukaryot. Cell 2006, 5:1831-1837.
    • (2006) Eukaryot. Cell , vol.5 , pp. 1831-1837
    • Orlova, M.1    Kanter, E.2    Krakovich, D.3    Kuchin, S.4


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