-
1
-
-
9144257886
-
The Pfam protein families database
-
Bateman, A., et al. (2004). The Pfam protein families database. Nucleic Acids Res. 32: D138-D141.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Bateman, A.1
-
2
-
-
0035206095
-
The Arabidopsis BELL1 and KNOX TALE homeodomain proteins interact through a domain conserved between plants and animals
-
Bellaoui, M., Pidkowich, M.S., Samach, A., Kushalappa, K., Kohalmi, S.E., Modrusan, Z., Crosby, W.L., and Haughn, G.W. (2001). The Arabidopsis BELL1 and KNOX TALE homeodomain proteins interact through a domain conserved between plants and animals. Plant Cell 13: 2455-2470.
-
(2001)
Plant Cell
, vol.13
, pp. 2455-2470
-
-
Bellaoui, M.1
Pidkowich, M.S.2
Samach, A.3
Kushalappa, K.4
Kohalmi, S.E.5
Modrusan, Z.6
Crosby, W.L.7
Haughn, G.W.8
-
3
-
-
33747450593
-
KNAT6: An Arabidopsis homeobox gene involved in meristem activity and organ separation
-
Belles-Boix, E., Hamant, O., Witiak, S.M., Morin, H., Traas, J., and Pautot, V. (2006). KNAT6: An Arabidopsis homeobox gene involved in meristem activity and organ separation. Plant Cell 18: 1900-1907.
-
(2006)
Plant Cell
, vol.18
, pp. 1900-1907
-
-
Belles-Boix, E.1
Hamant, O.2
Witiak, S.M.3
Morin, H.4
Traas, J.5
Pautot, V.6
-
4
-
-
0032473352
-
Prep1, a novel functional partner of Pbx proteins
-
Berthelsen, J., Zappavigna, V., Mavilio, F., and Blasi, F. (1998). Prep1, a novel functional partner of Pbx proteins. EMBO J. 17: 1423-1433.
-
(1998)
EMBO J
, vol.17
, pp. 1423-1433
-
-
Berthelsen, J.1
Zappavigna, V.2
Mavilio, F.3
Blasi, F.4
-
5
-
-
0029558541
-
A novel homeobox protein which recognizes a TGT core and functionally interferes with a retinoid-responsive motif
-
Bertolino, E., Reimund, B., Wildt-Perinic, D., and Clerc, R.G. (1995). A novel homeobox protein which recognizes a TGT core and functionally interferes with a retinoid-responsive motif. J. Biol. Chem. 270: 31178-31188.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 31178-31188
-
-
Bertolino, E.1
Reimund, B.2
Wildt-Perinic, D.3
Clerc, R.G.4
-
6
-
-
1542500543
-
VAAMANA - A BEL1-like homeodomain protein, interacts with KNOX proteins BP and STM and regulates inflorescence stem growth in Arabidopsis
-
Bhatt, A.M., Etchells, J.P., Canales, C., Lagodienko, A., and Dickinson, H. (2004). VAAMANA - A BEL1-like homeodomain protein, interacts with KNOX proteins BP and STM and regulates inflorescence stem growth in Arabidopsis. Gene 328: 103-111.
-
(2004)
Gene
, vol.328
, pp. 103-111
-
-
Bhatt, A.M.1
Etchells, J.P.2
Canales, C.3
Lagodienko, A.4
Dickinson, H.5
-
7
-
-
1842339865
-
Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals
-
Burglin, T.R. (1997). Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals. Nucleic Acids Res. 25: 4173-4180.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4173-4180
-
-
Burglin, T.R.1
-
8
-
-
0345084497
-
The PBC domain contains a MEINOX domain: Coevolution of Hox and TALE homeobox genes?
-
Burglin, T.R. (1998). The PBC domain contains a MEINOX domain: Coevolution of Hox and TALE homeobox genes? Dev. Genes Evol. 208: 113-116.
-
(1998)
Dev. Genes Evol
, vol.208
, pp. 113-116
-
-
Burglin, T.R.1
-
9
-
-
0041827272
-
Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER
-
Byrne, M.E., Groover, A.T., Fontana, J.R., and Martienssen, R.A. (2003). Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development 130: 3941-3950.
-
(2003)
Development
, vol.130
, pp. 3941-3950
-
-
Byrne, M.E.1
Groover, A.T.2
Fontana, J.R.3
Martienssen, R.A.4
-
10
-
-
0032447801
-
Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana
-
Clough, S.J., and Bent, A.F. (1998). Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J. 16: 735-743.
-
(1998)
Plant J
, vol.16
, pp. 735-743
-
-
Clough, S.J.1
Bent, A.F.2
-
11
-
-
0142245636
-
A gateway cloning vector set for high-throughput functional analysis of genes in planta
-
Curtis, M.D., and Grossniklaus, U. (2003). A gateway cloning vector set for high-throughput functional analysis of genes in planta. Plant Physiol. 133: 462-469.
-
(2003)
Plant Physiol
, vol.133
, pp. 462-469
-
-
Curtis, M.D.1
Grossniklaus, U.2
-
12
-
-
0036009913
-
KNAT1 and ERECTA regulate inflorescence architecture in Arabidopsis
-
Douglas, S.J., Chuck, G., Dengler, R.E., Pelecanda, L., and Riggs, C.D. (2002). KNAT1 and ERECTA regulate inflorescence architecture in Arabidopsis. Plant Cell 14: 547-558.
-
(2002)
Plant Cell
, vol.14
, pp. 547-558
-
-
Douglas, S.J.1
Chuck, G.2
Dengler, R.E.3
Pelecanda, L.4
Riggs, C.D.5
-
13
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar, R.C. (2004). MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
14
-
-
0028321893
-
Homeodomain proteins
-
Gehring, W.J., Affolter, M., and Burglin, T. (1994). Homeodomain proteins. Annu. Rev. Biochem. 63: 487-526.
-
(1994)
Annu. Rev. Biochem
, vol.63
, pp. 487-526
-
-
Gehring, W.J.1
Affolter, M.2
Burglin, T.3
-
15
-
-
8444248687
-
The role of knox genes in plant development
-
Hake, S., Smith, H.M., Holtan, H., Magnani, E., Mele, G., and Ramirez, J. (2004). The role of knox genes in plant development. Annu. Rev. Cell Dev. Biol. 20: 125-151.
-
(2004)
Annu. Rev. Cell Dev. Biol
, vol.20
, pp. 125-151
-
-
Hake, S.1
Smith, H.M.2
Holtan, H.3
Magnani, E.4
Mele, G.5
Ramirez, J.6
-
16
-
-
0038806468
-
Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis
-
Hiratsu, K., Matsui, K., Koyama, T., and Ohme-Takagi, M. (2003). Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J. 34: 733-739.
-
(2003)
Plant J
, vol.34
, pp. 733-739
-
-
Hiratsu, K.1
Matsui, K.2
Koyama, T.3
Ohme-Takagi, M.4
-
18
-
-
0024969217
-
The GUS reporter gene system
-
Jefferson, R.A. (1989). The GUS reporter gene system. Nature 342: 837-838.
-
(1989)
Nature
, vol.342
, pp. 837-838
-
-
Jefferson, R.A.1
-
19
-
-
0031446339
-
Meis1 and pKnox1 bind DNA cooperatively with Pbx1 utilizing an interaction surface disrupted in oncoprotein E2a-Pbx1
-
Knoepfler, P.S., Calvo, K.R., Chen, H., Antonarakis, S.E., and Kamps, M.P. (1997). Meis1 and pKnox1 bind DNA cooperatively with Pbx1 utilizing an interaction surface disrupted in oncoprotein E2a-Pbx1. Proc. Natl. Acad. Sci. USA 94: 14553-14558.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 14553-14558
-
-
Knoepfler, P.S.1
Calvo, K.R.2
Chen, H.3
Antonarakis, S.E.4
Kamps, M.P.5
-
20
-
-
35748959369
-
The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins
-
Kumar, R., Kushalappa, K., Godt, D., Pidkowich, M.S., Pastorelli, S., Hepworth, S.R., and Haughn, G.W. (2007). The Arabidopsis BEL1-LIKE HOMEODOMAIN proteins SAW1 and SAW2 act redundantly to regulate KNOX expression spatially in leaf margins. Plant Cell 19: 2719-2735.
-
(2007)
Plant Cell
, vol.19
, pp. 2719-2735
-
-
Kumar, R.1
Kushalappa, K.2
Godt, D.3
Pidkowich, M.S.4
Pastorelli, S.5
Hepworth, S.R.6
Haughn, G.W.7
-
21
-
-
0030070190
-
A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis
-
Long, J.A., Moan, E.I., Medford, J.I., and Barton, M.K. (1996). A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379: 66-69.
-
(1996)
Nature
, vol.379
, pp. 66-69
-
-
Long, J.A.1
Moan, E.I.2
Medford, J.I.3
Barton, M.K.4
-
22
-
-
0026356891
-
Predicting coiled coils from protein sequences
-
Lupas, A., Van Dyke, M., and Stock, J. (1991). Predicting coiled coils from protein sequences. Science 252: 1162-1164.
-
(1991)
Science
, vol.252
, pp. 1162-1164
-
-
Lupas, A.1
Van Dyke, M.2
Stock, J.3
-
23
-
-
0037252683
-
CDD: A curated Entrez database of conserved domain alignments
-
Marchler-Bauer, A., et al. (2003). CDD: a curated Entrez database of conserved domain alignments. Nucleic Acids Res. 31: 383-387.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 383-387
-
-
Marchler-Bauer, A.1
-
24
-
-
0036850369
-
Translational fusions with the engrailed repressor domain efficiently convert plant transcription factors into dominant-negative functions
-
Markel, H., Chandler, J., and Werr, W. (2002). Translational fusions with the engrailed repressor domain efficiently convert plant transcription factors into dominant-negative functions. Nucleic Acids Res. 30: 4709-4719.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 4709-4719
-
-
Markel, H.1
Chandler, J.2
Werr, W.3
-
25
-
-
0041319633
-
The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways
-
Mele, G., Ori, N., Sato, Y., and Hake, S. (2003). The knotted1-like homeobox gene BREVIPEDICELLUS regulates cell differentiation by modulating metabolic pathways. Genes Dev. 17: 2088-2093.
-
(2003)
Genes Dev
, vol.17
, pp. 2088-2093
-
-
Mele, G.1
Ori, N.2
Sato, Y.3
Hake, S.4
-
26
-
-
34548530884
-
Comprehensive analysis of animal TALE homeobox genes: New conserved motifs and cases of accelerated evolution
-
Mukherjee, K., and Burglin, T.R. (2007). Comprehensive analysis of animal TALE homeobox genes: new conserved motifs and cases of accelerated evolution. J. Mol. Evol. 65: 137-153.
-
(2007)
J. Mol. Evol
, vol.65
, pp. 137-153
-
-
Mukherjee, K.1
Burglin, T.R.2
-
27
-
-
0034902223
-
In vitro interactions between barley TALE homeodomain proteins suggest a role for protein-protein associations in the regulation of Knox gene function
-
Muller, J., Wang, Y., Franzen, R., Santi, L., Salamini, F., and Rohde, W. (2001). In vitro interactions between barley TALE homeodomain proteins suggest a role for protein-protein associations in the regulation of Knox gene function. Plant J. 27: 13-23.
-
(2001)
Plant J
, vol.27
, pp. 13-23
-
-
Muller, J.1
Wang, Y.2
Franzen, R.3
Santi, L.4
Salamini, F.5
Rohde, W.6
-
28
-
-
0034811010
-
Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15
-
Nagasaki, H., Sakamoto, T., Sato, Y., and Matsuoka, M. (2001). Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. Plant Cell 13: 2085-2098.
-
(2001)
Plant Cell
, vol.13
, pp. 2085-2098
-
-
Nagasaki, H.1
Sakamoto, T.2
Sato, Y.3
Matsuoka, M.4
-
29
-
-
33745123022
-
Distinct functions of homeodomain-containing and homeodomainless isoforms encoded by homothorax
-
Noro, B., Culi, J., McKay, D.J., Zhang, W., and Mann, R.S. (2006). Distinct functions of homeodomain-containing and homeodomainless isoforms encoded by homothorax. Genes Dev. 20: 1636-1650.
-
(2006)
Genes Dev
, vol.20
, pp. 1636-1650
-
-
Noro, B.1
Culi, J.2
McKay, D.J.3
Zhang, W.4
Mann, R.S.5
-
30
-
-
36349029309
-
The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC
-
Proveniers, M., Rutjens, B., Brand, M., and Smeekens, S. (2007). The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC. Plant J. 52: 899-913.
-
(2007)
Plant J
, vol.52
, pp. 899-913
-
-
Proveniers, M.1
Rutjens, B.2
Brand, M.3
Smeekens, S.4
-
31
-
-
0028864594
-
The BELL1 gene encodes a homeodomain protein involved in pattern formation in the Arabidopsis ovule primordium
-
Reiser, L., Modrusan, Z., Margossian, L., Samach, A., Ohad, N., Haughn, G.W., and Fischer, R.L. (1995). The BELL1 gene encodes a homeodomain protein involved in pattern formation in the Arabidopsis ovule primordium. Cell 83: 735-742.
-
(1995)
Cell
, vol.83
, pp. 735-742
-
-
Reiser, L.1
Modrusan, Z.2
Margossian, L.3
Samach, A.4
Ohad, N.5
Haughn, G.W.6
Fischer, R.L.7
-
32
-
-
0030725941
-
Nuclear translocation of extradenticle requires homothorax, which encodes an extradenticle-related homeodomain protein
-
Rieckhof, G.E., Casares, F., Ryoo, H.D., Abu-Shaar, M., and Mann, R.S. (1997). Nuclear translocation of extradenticle requires homothorax, which encodes an extradenticle-related homeodomain protein. Cell 91: 171-183.
-
(1997)
Cell
, vol.91
, pp. 171-183
-
-
Rieckhof, G.E.1
Casares, F.2
Ryoo, H.D.3
Abu-Shaar, M.4
Mann, R.S.5
-
33
-
-
0141727531
-
The role of the REPLUMLESS homeodomain protein in patterning the Arabidopsis fruit
-
Roeder, A.H., Ferrandiz, C., and Yanofsky, M.F. (2003). The role of the REPLUMLESS homeodomain protein in patterning the Arabidopsis fruit. Curr. Biol. 13: 1630-1635.
-
(2003)
Curr. Biol
, vol.13
, pp. 1630-1635
-
-
Roeder, A.H.1
Ferrandiz, C.2
Yanofsky, M.F.3
-
34
-
-
32944460040
-
Improved transcriptional activators and their use in mis-expression traps in Arabidopsis
-
Rutherford, S., Brandizzi, F., Townley, H., Craft, J., Wang, Y., Jepson, I., Martinez, A., and Moore, I. (2005). Improved transcriptional activators and their use in mis-expression traps in Arabidopsis. Plant J. 43: 769-788.
-
(2005)
Plant J
, vol.43
, pp. 769-788
-
-
Rutherford, S.1
Brandizzi, F.2
Townley, H.3
Craft, J.4
Wang, Y.5
Jepson, I.6
Martinez, A.7
Moore, I.8
-
35
-
-
0033404512
-
Regulation of Hox target genes by a DNA bound Homothorax/Hox/ Extradenticle complex
-
Ryoo, H.D., Marty, T., Casares, F., Affolter, M., and Mann, R.S. (1999). Regulation of Hox target genes by a DNA bound Homothorax/Hox/ Extradenticle complex. Development 126: 5137-5148.
-
(1999)
Development
, vol.126
, pp. 5137-5148
-
-
Ryoo, H.D.1
Marty, T.2
Casares, F.3
Affolter, M.4
Mann, R.S.5
-
37
-
-
0027251269
-
Optimizing the biolistic process for different biological applications
-
Sanford, J.C., Smith, F.D., and Russell, J.A. (1993). Optimizing the biolistic process for different biological applications. Methods Enzymol. 217: 483-509.
-
(1993)
Methods Enzymol
, vol.217
, pp. 483-509
-
-
Sanford, J.C.1
Smith, F.D.2
Russell, J.A.3
-
38
-
-
0037047129
-
Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity
-
Smith, H.M., Boschke, I., and Hake, S. (2002). Selective interaction of plant homeodomain proteins mediates high DNA-binding affinity. Proc. Natl. Acad. Sci. USA 99: 9579-9584.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 9579-9584
-
-
Smith, H.M.1
Boschke, I.2
Hake, S.3
-
39
-
-
2342479912
-
Competence to respond to floral inductive signals requires the homeobox genes PENNYWISE and POUND-FOOLISH
-
Smith, H.M., Campbell, B.C., and Hake, S. (2004). Competence to respond to floral inductive signals requires the homeobox genes PENNYWISE and POUND-FOOLISH. Curr. Biol. 14: 812-817.
-
(2004)
Curr. Biol
, vol.14
, pp. 812-817
-
-
Smith, H.M.1
Campbell, B.C.2
Hake, S.3
-
40
-
-
0042922504
-
The interaction of two homeobox genes, BREVIPEDICELLUS and PENNYWISE, regulates internode patterning in the Arabidopsis inflorescence
-
Smith, H.M., and Hake, S. (2003). The interaction of two homeobox genes, BREVIPEDICELLUS and PENNYWISE, regulates internode patterning in the Arabidopsis inflorescence. Plant Cell 15: 1717-1727.
-
(2003)
Plant Cell
, vol.15
, pp. 1717-1727
-
-
Smith, H.M.1
Hake, S.2
-
41
-
-
0037007117
-
The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis
-
Venglat, S.P., Dumonceaux, T., Rozwadowski, K., Parnell, L., Babic, V., Keller, W., Martienssen, R., Selvaraj, G., and Datla, R. (2002). The homeobox gene BREVIPEDICELLUS is a key regulator of inflorescence architecture in Arabidopsis. Proc. Natl. Acad. Sci. USA 99: 4730-4735.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4730-4735
-
-
Venglat, S.P.1
Dumonceaux, T.2
Rozwadowski, K.3
Parnell, L.4
Babic, V.5
Keller, W.6
Martienssen, R.7
Selvaraj, G.8
Datla, R.9
-
42
-
-
0026429196
-
The developmental gene Knotted-1 is a member of a maize homeobox gene family
-
Vollbrecht, E., Veit, B., Sinha, N., and Hake, S. (1991). The developmental gene Knotted-1 is a member of a maize homeobox gene family. Nature 350: 241-243.
-
(1991)
Nature
, vol.350
, pp. 241-243
-
-
Vollbrecht, E.1
Veit, B.2
Sinha, N.3
Hake, S.4
-
43
-
-
7044229949
-
Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation
-
Walter, M., Chaban, C., Schutze, K., Batistic, O., Weckermann, K., Nake, C., Blazevic, D., Grefen, C., Schumacher, K., Oecking, C., Harter, K., and Kudla, J. (2004). Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation. Plant J. 40: 428-438.
-
(2004)
Plant J
, vol.40
, pp. 428-438
-
-
Walter, M.1
Chaban, C.2
Schutze, K.3
Batistic, O.4
Weckermann, K.5
Nake, C.6
Blazevic, D.7
Grefen, C.8
Schumacher, K.9
Oecking, C.10
Harter, K.11
Kudla, J.12
-
44
-
-
0034617046
-
Three-amino acid extension loop homeodomain proteins Meis2 and TGIF differentially regulate transcription
-
Yang, Y., Hwang, C.K., D'Souza, U.M., Lee, S.H., Junn, E., and Mouradian, M.M. (2000). Three-amino acid extension loop homeodomain proteins Meis2 and TGIF differentially regulate transcription. J. Biol. Chem. 275: 20734-20741.
-
(2000)
J. Biol. Chem
, vol.275
, pp. 20734-20741
-
-
Yang, Y.1
Hwang, C.K.2
D'Souza, U.M.3
Lee, S.H.4
Junn, E.5
Mouradian, M.M.6
|