Quantifying translational mobility in neurons: Comparison between current optical techniques

Journal of Neuroscience

Volumn 30, Issue 49, 2010, Pages 16409-16416

  Kim, Sally A ^a,e   Sanabria, Hugo ^a,f   Digman, Michelle A ^b   Gratton, Enrico ^b   Schwille, Petra ^c   Zipfel, Warren R ^d   Waxham, M Neal ^a  

^a UNIVERSITY OF TEXAS MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c DRESDEN UNIVERSITY OF TECHNOLOGY   (Germany)

^d Cornell University   (United States)

^e CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

^f HEINRICH HEINE UNIVERSITY   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

FLUORESCENT DYE;

CELL SURFACE; FLUORESCENCE CORRELATION SPECTROSCOPY; FLUORESCENCE RECOVERY AFTER PHOTOBLEACHING; MOLECULE; NERVE CELL; PRIORITY JOURNAL; PROTEIN EXPRESSION; RASTER IMAGE CORRELATION SPECTROSCOPY; REVIEW; SIGNAL TRANSDUCTION; SINGLE PARTICLE TRACKING; SPECTROSCOPY;

ANIMALS; BIOLOGICAL TRANSPORT, ACTIVE; FLUORESCENT DYES; MICROSCOPY; MODELS, NEUROLOGICAL; NEURONS; OPTICAL DEVICES; SPECTRUM ANALYSIS;

EID: 78650042869     PISSN: 02706474     EISSN: 15292401     Source Type: Journal    
DOI: 10.1523/JNEUROSCI.3063-10.2010     Document Type: Review

References (70)

1. Akaaboune M, Grady RM, Turney S, Sanes JR, Lichtman JW (2002) Neurotransmitter receptor dynamics studied in vivo by reversible photo-unbinding of fluorescent ligands. Neuron 34:865-876. (Pubitemid 34722277)
2. Axelrod D, Koppel DE, Schlessinger J, Elson E, Webb WW (1976a) Mobility measurement by analysis of fluorescence photobleaching recovery kinetics. Biophys J 16:1055-1069.
3. Axelrod D, Ravdin P, Koppel DE, Schlessinger J, Webb WW, Elson EL, Podleski TR (1976b) Lateral motion of fluorescently labeled acetylcholine receptors in membranes of developing muscle fibers. Proc Natl Acad Sci U S A 73:4594-4598. (Pubitemid 8013946)
4. Barak LS, Webb WW (1982) Diffusion of low density lipoprotein-receptor complex on human fibroblasts. J Cell Biol 95:846-852.
5. Bats C, Groc L, Choquet D (2007) The interaction between Stargazin and PSD-95 regulates AMPA receptor surface trafficking. Neuron 53:719-734. (Pubitemid 46283370)
6. Berland KM, So PT, Gratton E (1995) Two-photon fluorescence correlation spectroscopy: method and application to the intracellular environment. Biophys J 68:694-701.
7. Blanpied TA, Kerr JM, Ehlers MD (2008) Structural plasticity with preserved topology in the postsynaptic protein network. Proc Natl Acad Sci U S A 105:12587-12592.
8. Blonk J, Don A, Van Aalst H, Birmingham J (1993) Fluorescence photobleaching recovery in the confocal light scanning microscope. J Microsc 169:363-374.
9. Bornfleth H, Edelmann P, Zink D, Cremer T, Cremer C (1999) Quantitative motion analysis of subchromosomal foci in living cells using four-dimensional microscopy. Biophys J 77:2871-2886. (Pubitemid 29519530)
10. Bouchaud JP, Georges A (1990) Comment on "Stochastic pathway to anomalous diffusion". Phys Rev A 41:1156-1157.
11. Brown EB, Wu ES, Zipfel W, Webb WW (1999) Measurement of molecular diffusion in solution by multiphoton fluorescence photobleaching recovery. Biophys J 77:2837-2849.
12. Brown CM, Dalal RB, Hebert B, Digman MA, Horwitz AR, Gratton E (2008) Raster image correlation spectroscopy (RICS) for measuring fast protein dynamics and concentrations with a commercial laser scanning confocal microscope. J Microsc 229:78-91.
13. Chan WC, Maxwell DJ, Gao X, Bailey RE, Han M, Nie S (2002) Luminescent quantum dots for multiplexed biological detection and imaging. Curr Opin Biotechnol 13:40-46.
14. Craig AM (1998) Transfecting cultured neurons. In: Culturing nerve cells (Banker G, Goslin K, eds), pp 79-111. Cambridge, MA: MIT Press.
15. Digman MA, Brown CM, Horwitz AR, Mantulin WW, Gratton E (2008) Paxillin dynamics measured during adhesion assembly and disassembly by correlation spectroscopy. Biophys J 94:2819-2831.
16. Digman MA, Wiseman PW, Horwitz AR, Gratton E (2009) Detecting protein complexes in living cells from laser scanning confocal image sequences by the cross correlation raster image spectroscopy method. Biophys J 96:707-716.
17. Eggeling C, Berger S, Brand L, Fries JR, Schaffer J, Volkmer A, Seidel CA (2001) Data registration and selective single-molecule analysis using multi-parameter fluorescence detection. J Biotechnol 86:163-180.
18. Eggeling C, Ringemann C, Medda R, Schwarzmann G, Sandhoff K, Polyakova S, Belov VN, Hein B, von Middendorff C, Schönle A, Hell SW (2009) Direct observation of the nanoscale dynamics of membrane lipids in a living cell. Nature 457:1159-1162.
19. Ehrenberg M, Rigler R (1974) Rotational Brownian motion and fluorescence intensity fluctuations. Chem Phys 4:390-401.
20. Elson E, Magde D (1974) Fluorescence correlation spectroscopy. I. Conceptual basis and theory. Biopolymers 13:1-27.
21. Gennerich A, Schild D (2002) Anisotropic diffusion in mitral cell dendrites revealed by fluorescence correlation spectroscopy. Biophys J 83:510-522.
22. Gielen E, Smisdom N, vandeVen M, De Clercq B, Gratton E, Digman M, Rigo JM, Hofkens J, Engelborghs Y, Ameloot M (2009) Measuring diffusion of lipid-like probes in artificial and natural membranes by raster image correlation spectroscopy (RICS): use of a commercial laser-scanning microscope with analog detection. Langmuir 25:5209-5218.
23. Goins AB, Sanabria H, Waxham MN (2008) Macromolecular crowding and size effects on probe microviscosity. Biophys J 95:5362-5373.
24. Groc L, Lafourcade M, Heine M, Renner M, Racine V, Sibarita JB, Lounis B, Choquet D, Cognet L (2007) Surface trafficking of neurotransmitter receptor: comparison between single-molecule/quantum dot strategies. J Neurosci 27:12433-12437.
25. Heinze KG, Costantino S, De Koninck P, Wiseman PW (2009) Beyond photobleaching, laser illumination unbinds fluorescent proteins. J Phys Chem B 113:5225-5233.
26. Hell SW, Wichmann J (1994) Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy. Opt Lett 19:780-782.
27. Hess ST, Webb WW (2002) Focal volume optics and experimental artifacts in confocal fluorescence correlation spectroscopy. Biophys J 83:2300-2317.
28. Jaqaman K, Loerke D, Mettlen M, Kuwata H, Grinstein S, Schmid SL, Danuser G (2008) Robust single-particle tracking in live-cell time-lapse sequences. Nat Methods 5:695-702.
29. Johnsson N, George N, Johnsson K (2005) Protein chemistry on the surface of living cells. Chembiochem 6:47-52.
30. Keppler A, Gendreizig S, Gronemeyer T, Pick H, Vogel H, Johnsson K (2003) A general method for the covalent labeling of fusion proteins with small molecules in vivo. Nat Biotechnol 21:86-89. (Pubitemid 36055833)
31. Kim SA, Heinze KG, Schwille P (2007) Fluorescence correlation spectroscopy in living cells. Nat Methods 4:963-973.
32. Kolin DL, Wiseman PW (2007) Advances in image correlation spectroscopy: measuring number densities, aggregation states, and dynamics of fluorescently labeled macromolecules in cells. Cell Biochem Biophys 49:141-164.
33. Kubitscheck U, Kückmann O, Kues T, Peters R (2000) Imaging and tracking of single GFP molecules in solution. Biophys J 78:2170-2179.
34. Levi V, Ruan Q, Gratton E (2005) 3-D particle tracking in a two-photon microscope: application to the study of molecular dynamics in cells. Biophys J 88:2919-2928.
35. Lippincott-Schwartz J, Altan-Bonnet N, Patterson GH (2003) Photobleaching and photoactivation: following protein dynamics in living cells. Nat Cell Biol Suppl:S7-S14.
36. Los GV, Encell LP, McDougall MG, Hartzell DD, Karassina N, Zimprich C, Wood MG, Learish R, Ohana RF, Urh M, Simpson D, Mendez J, Zimmerman K, Otto P, Vidugiris G, Zhu J, Darzins A, Klaubert DH, Bulleit RF, Wood KV (2008) HaloTag: a novel protein labeling technology for cell imaging and protein analysis. ACS Chem Biol 3:373-382.
37. Magde D, Elson E, Webb WW (1972) Thermodynamic fluctuations in a reacting system - measurement by fluorescence correlation spectroscopy. Phys Rev Lett 29:705-708.
38. Magde D, Elson EL, Webb WW (1974) Fluorescence correlations spectroscopy. II. An experimental realization. Biopolymers 13:29-61.
39. Majewska A, Tashiro A, Yuste R (2000) Regulation of spine calcium dynamics by rapid spine motility. J Neurosci 20:8262-8268.
40. Manley S, Gillette JM, Patterson GH, Shroff H, Hess HF, Betzig E, Lippincott-Schwartz J (2008) High-densitymappingof single-molecule trajectories with photoactivated localization microscopy. Nat Methods 5:155-157. (Pubitemid 351181741)
41. Mavrakis M, Rikhy R, Lilly M, Lippincott-Schwartz J (2008) Fluorescence imaging techniques for studying Drosophila embryo development. Curr Protoc Cell Biol 39:4.18.1-4.18.43.
42. Meissner O, Häberlein H (2003) Lateral mobility and specific binding to GABA(A) receptors on hippocampal neurons monitored by fluorescence correlation spectroscopy. Biochemistry 42:1667-1672.
43. Meseth U, Wohland T, Rigler R, Vogel H (1999) Resolution of fluorescence correlation measurements. Biophys J 76:1619-1631.
44. Minton AP (2001) The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media. J Biol Chem 276:10577-10580.
45. Mitra K, Lippincott-Schwartz J (2010) Analysis of mitochondrial dynamics and functions using imaging approaches. Curr Protoc Cell Biol 46:4.25.1-4.25.21.
46. Nohe A, Petersen NO (2007) Image correlation spectroscopy. Sci STKE 2007:pl7.
47. Periasamy N, Bicknese S, Verkman AS (1996) Reversible photobleaching of fluorescein conjugates in air-saturated viscous solutions: singlet and triplet state quenching by tryptophan. Photochem Photobiol 63:265-271.
48. Pinaud F, Clarke S, Sittner A, Dahan M (2010) Probing cellular events, one quantum dot at a time. Nat Methods 7:275-285.
49. Presley JF, Cole NB, Schroer TA, Hirschberg K, Zaal KJ, Lippincott-Schwartz J (1997) ER-to-Golgi transport visualized in living cells. Nature 389:81-85.
50. Rittweger E, Han KY, Irvine SE, Eggeling C, Hell SW (2009) STED microscopy reveals crystal colour centres with nanometric resolution. Nat Photonics 3:144-147.
51. Sanabria H, Digman MA, Gratton E, Waxham MN (2008) Spatial diffusivity and availability of intracellular calmodulin. Biophys J 95:6002-6015.
52. Sato TR, Gray NW, Mainen ZF, Svoboda K (2007) The functional microarchitecture of the mouse barrel cortex. PLoS Biol 5:e189.
53. Saxton MJ (2008) Single-particle tracking: connecting the dots. Nat Methods 5:671-672.
54. Saxton MJ, Jacobson K (1997) Single-particle tracking: applications to membrane dynamics. Annu Rev Biophys Biomol Struct 26:373-399.
55. Sbalzarini IF, Mezzacasa A, Helenius A, Koumoutsakos P (2005) Effects of organelle shape on fluorescence recovery after photobleaching. Biophys J 89:1482-1492.
56. Schwille P, Haupts U, Maiti S, Webb WW (1999) Molecular dynamics in living cells observed by fluorescence correlation spectroscopy with one- and two-photon excitation. Biophys J 77:2251-2265. (Pubitemid 29463185)
57. Seksek O, Biwersi J, Verkman AS (1997) Translational diffusion of macromolecule-sized solutes in cytoplasm and nucleus. J Cell Biol 138:131-142.
58. Shaner NC, Steinbach PA, Tsien RY (2005) A guide to choosing fluorescent proteins. Nat Methods 2:905-909.
59. Solomon TH, Weeks ER, Swinney HL (1993) Observation of anomalous diffusion and Lévy flights in a two-dimensional rotating flow. Phys Rev Lett 71:3975-3978.
60. Stagi M, Dittrich PS, Frank N, Iliev AI, Schwille P, Neumann H (2005) Breakdown of axonal synaptic vesicle precursor transport by microglial nitric oxide. J Neurosci 25:352-362.
61. Svoboda K, Tank DW, Denk W (1996) Direct measurement of coupling between dendritic spines and shafts. Science 272:716-719.
62. Tagawa A, Mezzacasa A, Hayer A, Longatti A, Pelkmans L, Helenius A (2005) Assembly and trafficking of caveolar domains in the cell: caveolae as stable, cargo-triggered, vesicular transporters. J Cell Biol 170:769-779.
63. Terada S, Kinjo M, Hirokawa N (2000) Oligomeric tubulin in large transporting complex is transported via kinesin in squid giant axons. Cell 103:141-155.
64. Thomann D, Rines DR, Sorger PK, Danuser G (2002) Automatic fluorescent tag detection in 3D with super-resolution: application to the analysis of chromosome movement. J Microsc 208:49-64.
65. Tsuriel S, Geva R, Zamorano P, Dresbach T, Boeckers T, Gundelfinger ED, Garner CC, Ziv NE (2006) Local sharing as a predominant determinant of synaptic matrix molecular dynamics. PLoS Biol 4:e271.
66. Ward TH, Polishchuk RS, Caplan S, Hirschberg K, Lippincott-Schwartz J (2001) Maintenance of Golgi structure and function depends on the integrity of ER export. J Cell Biol 155:557-570. (Pubitemid 34289314)
67. Wu J, Berland KM (2008) Propagators and time-dependent diffusion coefficients for anomalous diffusion. Biophys J 95:2049-2052.
68. Yin J, Lin AJ, Golan DE, Walsh CT (2006) Site-specific protein labeling by Sfp phosphopantetheinyl transferase. Nat Protoc 1:280-285.
69. Yoshii A, Constantine-Paton M (2007) BDNF induces transport of PSD-95 to dendrites through PI3K-AKT signaling after NMDA receptor activation. Nat Neurosci 10:702-711.
70. Zipfel WR, Webb WW (2001) In vivo diffusion measurements using multiphoton excitation fluorescence photobleaching recovery and fluorescence correlation spectroscopy. In: Methods in cellular imaging (Periasamy A, ed), pp 216-235. New York: Oxford UP.