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Volumn 8, Issue SUPPL. 1, 2010, Pages 33-45

Stepwise origin and functional diversification of the afl subfamily B3 genes during land plant evolution

Author keywords

AFL B3 genes; functional diversification; genome wide comparative analysis; stepwise origin

Indexed keywords

DICOTYLEDONEAE; EMBRYOPHYTA; SPERMATOPHYTA;

EID: 78650025213     PISSN: 02197200     EISSN: None     Source Type: Journal    
DOI: 10.1142/S0219720010005129     Document Type: Article
Times cited : (13)

References (54)
  • 2
    • 67149111588 scopus 로고    scopus 로고
    • Evolution of the B3 DNA binding superfamily: New insights into REM family gene diversification
    • Romanel E, Schrago CG, Counago RM, Russo C, Alves-Ferreira M, Evolution of the B3 DNA binding superfamily: New insights into REM family gene diversification, Plos One 4:e57916, 2009.
    • (2009) Plos One , vol.4
    • Romanel, E.1    Schrago, C.G.2    Counago, R.M.3    Russo, C.4    Alves-Ferreira, M.5
  • 3
    • 12044255270 scopus 로고
    • Acquisition of desiccation tolerance and longevity in seeds of arabidopsis-thaliana - A comparative-study using abscisic acid-insensitive ABI3 mutants
    • Ooms J, Leonkloosterziel KM, Bartel D, Koornneef M, Karssen CM, Acquisition of desiccation tolerance and longevity in seeds of arabidopsis-thaliana - A comparative-study using abscisic acid-insensitive ABI3 mutants, Plant Physiol 102:1185-1191, 1993.
    • (1993) Plant Physiol , vol.102 , pp. 1185-1191
    • Ooms, J.1    Leonkloosterziel, K.M.2    Bartel, D.3    Koornneef, M.4    Karssen, C.M.5
  • 4
    • 0032167979 scopus 로고    scopus 로고
    • FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana
    • DOI 10.1046/j.1365-313X.1998.00259.x
    • Luerssen K, Kirik V, Herrmann P, Misera S, FUSCA3 encodes a protein with a conserved VP1/ABI3-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana, Plant J 15:755-764, 1998. (Pubitemid 28463804)
    • (1998) Plant Journal , vol.15 , Issue.6 , pp. 755-764
    • Luerssen, H.1    Kirik, V.2    Herrmann, P.3    Misera, S.4
  • 6
    • 0027947046 scopus 로고
    • Leafy cotyledon mutants of Arabidopsis
    • DOI 10.1105/tpc.6.8.1049
    • Meinke DW, Franzmann LH, Nickle TC, Yeung EC, Leafy cotyledon mutants of arabidopsis, Plant Cell 6:1049-1064, 1994. (Pubitemid 2137210)
    • (1994) Plant Cell , vol.6 , Issue.8 , pp. 1049-1064
    • Meinke, D.W.1    Franzmann, L.H.2    Nickle, T.C.3    Yeung, E.C.4
  • 7
    • 0031201011 scopus 로고    scopus 로고
    • The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development
    • Parcy F, Valon C, Kohara A, Misera S, Giraudat J, The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development, Plant Cell 9:1265-1277, 1997.
    • (1997) Plant Cell , vol.9 , pp. 1265-1277
    • Parcy, F.1    Valon, C.2    Kohara, A.3    Misera, S.4    Giraudat, J.5
  • 8
    • 0000308488 scopus 로고
    • Role of abscisic-acid in the induction of desiccation tolerance in developing seeds of arabidopsis-thaliana
    • Meurs C, Basra AS, Karssen CM, Vanloon LC, Role of abscisic-acid in the induction of desiccation tolerance in developing seeds of arabidopsis-thaliana, Plant Physiol 98:1484-1493, 1992.
    • (1992) Plant Physiol , vol.98 , pp. 1484-1493
    • Meurs, C.1    Basra, A.S.2    Karssen, C.M.3    Vanloon, L.C.4
  • 9
    • 33745768586 scopus 로고    scopus 로고
    • A network of local and redundant gene regulation governs Arabidopsis seed maturation
    • DOI 10.1105/tpc.105.039925
    • To A, Valon C, Savino G, Guilleminot J, Devic M, Giraudat J, Parcy F, A network of local and redundant gene regulation governs Arabidopsis seed maturation, Plant Cell 18:1642-1651, 2006. (Pubitemid 44025549)
    • (2006) Plant Cell , vol.18 , Issue.7 , pp. 1642-1651
    • To, A.1    Valon, C.2    Savino, G.3    Guilleminot, J.4    Devic, M.5    Giraudat, J.6    Parcy, F.7
  • 10
    • 43549090392 scopus 로고    scopus 로고
    • Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis
    • DOI 10.1111/j.1365-313X.2008.03461.x
    • Santos-Mendoza M, Dubreucq B, Baud S, Parcy F, Caboche M, Lepiniec L, Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis, Plant J 54:608-620, 2008. (Pubitemid 351678046)
    • (2008) Plant Journal , vol.54 , Issue.4 , pp. 608-620
    • Santos-Mendoza, M.1    Dubreucq, B.2    Baud, S.3    Parcy, F.4    Caboche, M.5    Lepiniec, L.6
  • 11
    • 56549091074 scopus 로고    scopus 로고
    • LECs go crazy in embryo development
    • Braybrook SA, Harada JJ, LECs go crazy in embryo development, Trends Plant Sci 13:624-630, 2008.
    • (2008) Trends Plant Sci , vol.13 , pp. 624-630
    • Braybrook, S.A.1    Harada, J.J.2
  • 12
    • 0020870199 scopus 로고
    • The evolution and biological significance of seeds
    • Steeves TA, The evolution and biological significance of seeds, Can J Bot 61: 3550-3560, 1983.
    • (1983) Can J Bot , vol.61 , pp. 3550-3560
    • Steeves, T.A.1
  • 13
    • 0027145206 scopus 로고
    • Embryogenesis in higher-plants-An overview
    • West M, Harada JJ, Embryogenesis in higher-plants-An overview, Plant Cell 5: 1361-1369, 1993.
    • (1993) Plant Cell , vol.5 , pp. 1361-1369
    • West, M.1    Harada, J.J.2
  • 14
    • 0027984393 scopus 로고
    • Plant embryogenesis - Zygote to seed
    • Goldberg RB, Depaiva G, Yadegari R, Plant embryogenesis - Zygote to seed, Science 266:605-614, 1994.
    • (1994) Science , vol.266 , pp. 605-614
    • Goldberg, R.B.1    Depaiva, G.2    Yadegari, R.3
  • 15
    • 0035041743 scopus 로고    scopus 로고
    • Role of arabidopsis LEAFY COTYLEDON genes in seed development
    • Harada JJ, Role of Arabidopsis LEAFY COTYLEDON genes in seed development, J Plant Physiol 158:405-409, 2001. (Pubitemid 32378890)
    • (2001) Journal of Plant Physiology , vol.158 , Issue.4 , pp. 405-409
    • Harada, J.J.1
  • 16
    • 27744464921 scopus 로고    scopus 로고
    • Seed maturation: Developing an intrusive phase to accomplish a quiescent state
    • DOI 10.1387/ijdb.052046jc
    • Vicente-Carbajosa J, Carbonero P, Seed maturation: Developing an intrusive phase to accomplish a quiescent state, Int J Dev Biol 49:645-651, 2005. (Pubitemid 41615616)
    • (2005) International Journal of Developmental Biology , vol.49 , Issue.5-6 , pp. 645-651
    • Vicente-Carbajosa, J.1    Carbonero, P.2
  • 17
    • 0026002971 scopus 로고
    • The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator
    • Mccarty DR, Hattori T, Carson CB, Vasil V, Lazar M, Vasil IK, The VIVIPAROUS-1 developmental gene of maize encodes a novel transcriptional activator, Cell 66: 895-905, 1991. (Pubitemid 121001724)
    • (1991) Cell , vol.66 , Issue.5 , pp. 895-905
    • McCarty, D.R.1    Hattori, T.2    Carson, C.B.3    Vasil, V.4    Lazar, M.5    Vasil, I.K.6
  • 19
    • 0036066765 scopus 로고    scopus 로고
    • The role of lineage-specific gene family expansion in the evolution of eukaryotes
    • DOI 10.1101/gr.174302
    • Lespinet O, Wolf YI, Koonin EV, Aravind L, The role of lineage-specific gene family expansion in the evolution of eukaryotes, Genome Res 12:1048-1059, 2002. (Pubitemid 34785197)
    • (2002) Genome Research , vol.12 , Issue.7 , pp. 1048-1059
    • Lespinet, O.1    Wolf, Y.I.2    Koonin, E.V.3    Aravind, L.4
  • 20
    • 14344250098 scopus 로고    scopus 로고
    • The WRKY transcription factor superfamily: Its origin in eukaryotes and expansion in plants
    • Zhang YJ, Wang LJ, The WRKY transcription factor superfamily: Its origin in eukaryotes and expansion in plants, BMC Evol Biol 5(1):1, 2005.
    • (2005) BMC Evol Biol , vol.5 , Issue.1 , pp. 1
    • Zhang, Y.J.1    Wang, L.J.2
  • 21
    • 44949244789 scopus 로고    scopus 로고
    • Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family
    • Guo AY, Zhu QH, Gu XC, Ge S, Yang J, Luo JC, Genome-wide identification and evolutionary analysis of the plant specific SBP-box transcription factor family, Gene 418:1-8, 2008.
    • (2008) Gene , vol.418 , pp. 1-8
    • Guo, A.Y.1    Zhu, Q.H.2    Gu, X.C.3    Ge, S.4    Yang, J.5    Luo, J.C.6
  • 22
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • DOI 10.1101/gr.9.9.868
    • Huang XQ, Madan A, CAP3: A DNA sequence assembly program, Genome Res 9: 868-877, 1999. (Pubitemid 29488446)
    • (1999) Genome Research , vol.9 , Issue.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 24
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG, The CLUSTAL-X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res 25:4876-4882, 1997.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 26
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA, BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symp Ser 41:95-98, 1999.
    • (1999) Nucleic Acids Symp ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 27
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • DOI 10.1093/molbev/msm092
    • Tamura K, Dudley J, Nei M, Kumar S, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Molecular Biology and Evolution 24: 1596-1599, 2007. (Pubitemid 47236692)
    • (2007) Molecular Biology and Evolution , vol.24 , Issue.8 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 28
    • 0034043778 scopus 로고    scopus 로고
    • Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
    • Castresana J, Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis, Mol Biol Evol 17:540-552, 2000. (Pubitemid 30210700)
    • (2000) Molecular Biology and Evolution , vol.17 , Issue.4 , pp. 540-552
    • Castresana, J.1
  • 29
    • 0002279391 scopus 로고
    • PAUP - A computer-program for phylogenetic inference using maximum parsimony
    • Swofford DL, PAUP - A computer-program for phylogenetic inference using maximum parsimony, J Gen Physiol 102:A9, 1993.
    • (1993) J Gen Physiol , vol.102
    • Swofford, D.L.1
  • 32
    • 33745207298 scopus 로고    scopus 로고
    • Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens
    • DOI 10.1111/j.1365-313X.2006.02764.x
    • Marella HH, Sakata Y, Quatrano RS, Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens, Plant J 46:1032-1044, 2006. (Pubitemid 43909263)
    • (2006) Plant Journal , vol.46 , Issue.6 , pp. 1032-1044
    • Marella, H.H.1    Sakata, Y.2    Quatrano, R.S.3
  • 34
    • 71649115722 scopus 로고    scopus 로고
    • The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes
    • Kobayashi T, Itai RN, Ogo Y, Kakei Y, Nakanishi H, Takahashi M, Nishizawa NK, The rice transcription factor IDEF1 is essential for the early response to iron deficiency, and induces vegetative expression of late embryogenesis abundant genes, Plant J 60:948-961, 2009.
    • (2009) Plant J , vol.60 , pp. 948-961
    • Kobayashi, T.1    Itai, R.N.2    Ogo, Y.3    Kakei, Y.4    Nakanishi, H.5    Takahashi, M.6    Nishizawa, N.K.7
  • 35
    • 0034927781 scopus 로고    scopus 로고
    • Physical interactions between ABA response loci of Arabidopsis
    • DOI 10.1046/j.1365-313X.2001.01069.x
    • Nakamura S, Lynch TJ, Finkelstein RR, Physical interactions between ABA response loci of Arabidopsis, Plant J 26:627-635, 2001. (Pubitemid 32692905)
    • (2001) Plant Journal , vol.26 , Issue.6 , pp. 627-635
    • Nakamura, S.1    Lynch, T.J.2    Finkelstein, R.R.3
  • 36
    • 33847308222 scopus 로고    scopus 로고
    • The B2 domain of VIVIPAROUS1 is bi-functional and regulates nuclear localization and transactivation
    • DOI 10.1007/s00425-006-0398-6
    • Marella HH, Quatrano RS, The B2 domain of VIVIPAROUS1 is bi-functional and regulates nuclear localization and transactivation, Planta 225:863-872, 2007. (Pubitemid 46317969)
    • (2007) Planta , vol.225 , Issue.4 , pp. 863-872
    • Marella, H.H.1    Quatrano, R.S.2
  • 38
    • 0030063872 scopus 로고    scopus 로고
    • A conserved domain of the viviparous-1 gene product enhances the DNA binding activity of the bZIP protein EmBP-1 and other transcription factors
    • DOI 10.1074/jbc.271.7.3366
    • Hill A, Nantel A, Rock CD, Quatrano RS, A conserved domain of the viviparous-1 gene product enhances the DNA binding activity of the bZIP protein EmBP-1 and other transcription factors, J Biol Chem 271:3366-3374, 1996. (Pubitemid 26065640)
    • (1996) Journal of Biological Chemistry , vol.271 , Issue.7 , pp. 3366-3374
    • Hill, A.1    Nantel, A.2    Rock, C.D.3    Quatrano, R.S.4
  • 39
    • 0000863074 scopus 로고
    • Phylogenetic analysis of seed plants and the origin of angiosperms
    • Crane PR, Phylogenetic analysis of seed plants and the origin of angiosperms, Ann Mo Bot Gard 72:716-793, 1985.
    • (1985) Ann Mo Bot Gard , vol.72 , pp. 716-793
    • Crane, P.R.1
  • 41
    • 0001234321 scopus 로고
    • Seed plant phylogeny and the origin of angiosperms - An experimental cladistic approach
    • Doyle JA, Donoghue MJ, Seed plant phylogeny and the origin of angiosperms - An experimental cladistic approach, Bot Rev 52:321-431, 1986.
    • (1986) Bot Rev , vol.52 , pp. 321-431
    • Doyle, J.A.1    Donoghue, M.J.2
  • 42
    • 0028973842 scopus 로고
    • The origin and early diversification of angiosperms
    • Crane PR, Friis EM, Pedersen KR, The origin and early diversification of angiosperms, Nature 374:27-33, 1995.
    • (1995) Nature , vol.374 , pp. 27-33
    • Crane, P.R.1    Friis, E.M.2    Pedersen, K.R.3
  • 43
    • 0034636023 scopus 로고    scopus 로고
    • Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers
    • DOI 10.1073/pnas.97.8.4092
    • Bowe LM, Coat G, DePamphilis CW, Phylogeny of seed plants based on all three genomic compartments: Extant gymnosperms are monophyletic and Gnetales' closest relatives are conifers, Proc Natl Acad Sci USA 97:4092-4097, 2000. (Pubitemid 30226092)
    • (2000) Proceedings of the National Academy of Sciences of the United States of America , vol.97 , Issue.8 , pp. 4092-4097
    • Bowe, L.M.1    Coat, G.2    DePamphilis, C.W.3
  • 45
    • 34250640609 scopus 로고    scopus 로고
    • Transcript profiling and identification of molecular markers for early microspore embryogenesis in Brassica napus
    • DOI 10.1104/pp.106.092932
    • Malik MR, Wang F, Dirpaul JM, Zhou N, Polowick PL, Ferrie A, Krochko JE, Transcript profiling and identification of molecular markers for early microspore embryo-genesis in Brassica napus, Plant Physiol 144:134-154, 2007. (Pubitemid 46941620)
    • (2007) Plant Physiology , vol.144 , Issue.1 , pp. 134-154
    • Malik, M.R.1    Wang, F.2    Dirpaul, J.M.3    Zhou, N.4    Polowick, P.L.5    Ferrie, A.M.R.6    Krochko, J.E.7
  • 46
    • 0028045665 scopus 로고
    • The FUS3 gene of Arabidopsis thaliana is a regulator of gene expression during late embryogenesis
    • DOI 10.1046/j.1365-313X.1994.06030379.x
    • Baumlein H, Misera S, Luerssen H, Kolle K, Horstmann C, Wobus U, Muller AJ, The FUS3 gene of arabidopsis-thaliana is a regulator of gene-expression during late embryogenesis, Plant J 6:379-387, 1994. (Pubitemid 2135142)
    • (1994) Plant Journal , vol.6 , Issue.3 , pp. 379-387
    • Baumlein, H.1    Misera, S.2    Luerssen, H.3    Kolle, K.4    Horstmann, C.5    Wobus, U.6    Muller, A.J.7
  • 47
    • 0028052601 scopus 로고
    • FUSCA: A heterochronic mutation affecting late embryo development in Arabidopsis
    • DOI 10.1105/tpc.6.5.589
    • Keith K, Kraml M, Dengler NG, Mccourt P, FUSCA3 - A heterochronic mutation affecting late embryo development in arabidopsis, Plant Cell 6:589-600, 1994. (Pubitemid 2103490)
    • (1994) Plant Cell , vol.6 , Issue.5 , pp. 589-600
    • Keith, K.1    Kraml, M.2    Dengler, N.G.3    McCourt, P.4
  • 48
    • 0034070573 scopus 로고    scopus 로고
    • Gene regulation during late embryogenesis: The RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product
    • DOI 10.1046/j.1365-313X.2000.00686.x
    • Reidt W, Wohlfarth T, Ellerstrom M, Czihal A, Tewes A, Ezcurra I, Rask L, Baumlein H, Gene regulation during late embryogenesis: The RY motif of maturation-specific gene promoters is a direct target of the FUS3 gene product, Plant J 21:401-408, 2000. (Pubitemid 30181269)
    • (2000) Plant Journal , vol.21 , Issue.5 , pp. 401-408
    • Reidt, W.1    Wohlfarth, T.2    Ellerstrom, M.3    Czihal, A.4    Tewes, A.5    Ezcurra, I.6    Rask, L.7    Baumlein, H.8
  • 49
    • 2442572055 scopus 로고    scopus 로고
    • Seed-specific transcription factors ABI3 and FUS3: Molecular interaction with DNA
    • DOI 10.1007/s00425-004-1206-9
    • Monke G, Altschmied L, Tewes A, Reidt W, Mock HP, Baumlein H, Conrad U, Seed-specific transcription factors ABI3 and FUS3: Molecular interaction with DNA, Planta 219:158-166, 2004. (Pubitemid 38642146)
    • (2004) Planta , vol.219 , Issue.1 , pp. 158-166
    • Monke, G.1    Altschmied, L.2    Tewes, A.3    Reidt, W.4    Mock, H.-P.5    Baumlein, H.6    Conrad, U.7
  • 51
    • 0028534830 scopus 로고
    • Regulation of gene expression programs during Arabidopsis seed development: Roles of the ABI3 locus and of endogenous abscisic acid
    • Parcy F, Valon C, Raynal M, Gaubiercomella P, Delseny M, Giraudat J, Regulation of gene-expression programs during Arabidopsis seed development - Roles of the ABI3 locus and of endogenous ABSCISIC-ACID, Plant Cell 6:1567-1582, 1994. (Pubitemid 24986211)
    • (1994) Plant Cell , vol.6 , Issue.11 , pp. 1567-1582
    • Parcy, F.1    Valon, C.2    Raynal, M.3    Gaubier-Comella, P.4    Delseny, M.5    Giraudat, J.6
  • 52
    • 51649104525 scopus 로고    scopus 로고
    • Functional symmetry of the B3 network controlling seed development
    • Suzuki M, McCarty DR, Functional symmetry of the B3 network controlling seed development, Curr Opin Plant Biol 11:548-553, 2008.
    • (2008) Curr Opin Plant Biol , vol.11 , pp. 548-553
    • Suzuki, M.1    McCarty, D.R.2
  • 54
    • 0346505549 scopus 로고    scopus 로고
    • The FUS3 transcription factor functions through the epidermal regulator TTG1 during embryogenesis in Arabidopsis
    • DOI 10.1046/j.1365-313X.2003.01939.x
    • Tsuchiya Y, Nambara E, Naito S, McCourt P, The FUS3 transcription factor functions through the epidermal regulator TTG1 during embryogenesis in Arabidopsis, Plant J 37:73-81, 2004. (Pubitemid 38078266)
    • (2004) Plant Journal , vol.37 , Issue.1 , pp. 73-81
    • Tsuchiya, Y.1    Nambara, E.2    Naito, S.3    McCourt, P.4


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