The B2 domain of VIVIPAROUS1 is bi-functional and regulates nuclear localization and transactivation

Planta

Volumn 225, Issue 4, 2007, Pages 863-872

  Marella, Heather H ^a   Quatrano, Ralph S ^a  

^a WASHINGTON UNIVERSITY   (United States)

Author keywords

Abscisic acid; Barley; Em; Nuclear localization; Physcomitrella; VP1

Indexed keywords

VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; BARLEY; BRYOPSIDA; CELL NUCLEUS; CHEMISTRY; GENETICS; METABOLISM; MISSENSE MUTATION; MOLECULAR GENETICS; NUCLEAR LOCALIZATION SIGNAL; NUCLEOTIDE SEQUENCE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; TRANSACTIVATION;

AMINO ACID SEQUENCE; BRYOPSIDA; CELL NUCLEUS; CONSERVED SEQUENCE; HORDEUM; MOLECULAR SEQUENCE DATA; MUTATION, MISSENSE; NUCLEAR LOCALIZATION SIGNALS; PLANT PROTEINS; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; TRANS-ACTIVATION (GENETICS);

ARABIDOPSIS; HORDEUM; HORDEUM VULGARE; PHYSCOMITRELLA; PHYSCOMITRELLA PATENS;

EID: 33847308222     PISSN: 00320935     EISSN: 14322048     Source Type: Journal    
DOI: 10.1007/s00425-006-0398-6     Document Type: Article

References (48)

1. Abramoff MD, Magelhaes PJ, Ram SJ (2004) Image processing with ImageJ. Biophoton Int 11:36-42
2. Bezanilla M, Pan A, Quatrano RS (2003) RNA interference in the moss Physcomitrella patens. Plant Physiol 133:470-474
3. Bies-Etheve N, da Silva Conceicao A, Giraudat J, Koornneef M, Leon-Kloosterziel K, Valon C, Delseny M (1999) Importance of the B2 domain of the Arabidopsis ABI3 protein for Em and 2S albumin gene regulation. Plant Mol Biol 40:1045-1054
4. Blom N, Gammeltoft S, Brunak S (1999) Sequence- and structure- based prediction of eukaryotic protein phosphorylation sites. J Mol Biol 294:1351-1362
5. Bobb AJ, Eiben HG, Bustos MM (1995) PvAlf, an embryo-specific acidic transcriptional activator enhances gene expression from phaseolin and phytohemagglutinin promoters. Plant J 8:331-343
6. Brady SM, Sarkar SF, Bonetta D, McCourt P (2003) The ABSCISIC ACID INSENSITIVE 3 (ABI3) gene is modulated by farnesylation and is involved in auxin signaling and lateral root development in Arabidopsis. Plant J 34:67-75
7. Bruce WB, Christensen AH, Klein T, Fromm M, Quail PH (1989) Photoregulation of a phytochrome gene promoter from oat transferred into rice by particle bombardment. Proc Natl Acad Sci USA 86:9692-9696
8. Chandler JW, Bartels D (1997) Structure and function of the vp1 gene homologue from the resurrection plant Craterostigma plantagineum Hochst. Mol Gen Genet 256:539-546
9. Christensen AH, Quail PH (1996) Ubiquitin promoter-based vectors for high-level expression of selectable and/or screenable marker genes in monocotyledonous plants. Transgenic Res 5:213-218
10. Cokol M, Nair R, Rost B (2000) Finding nuclear localization signals. EMBO Rep 1:411-415
11. Dingwall C, Sharnick SV, Laskey RA (1982) A polypeptide domain that specifies migration of nucleoplasmin into the nucleus. Cell 30:449-458
12. Dworetzky SI, Feldherr CM (1988) Translocation of RNA-coated gold particles through the nuclear pores of oocytes. J Cell Biol 106:575-584
13. Ezcurra I, WycliVe P, Nehlin L, Ellerstrom M, Rask L (2000) Transactivation of the Brassica napus napin promoter by ABI3 requires interaction of the conserved B2 and B3 domains of ABI3 with diVerent cis-elements: B2 mediates activation through an ABRE, whereas B3 interacts with a RY/ G-box. Plant J 24:57-66
14. Footitt S, IngouV M, Clapham D, von Arnold S (2003) Expression of the viviparous 1 (Pavp1) and p34cdc2 protein kinase (cdc2Pa) genes during somatic embryogenesis in Norway spruce (Picea abies [L.] Karst). J Exp Bot 54:1711-1719
15. Giraudat J, Hauge BM, Valon C, Smalle J, Parcy F, Goodman HM (1992) Isolation of the Arabidopsis ABI3 gene by positional cloning. Plant Cell 4:1251-1261
16. Hattori T, Terada T, Hamasuna ST (1994) Sequence and functional analyses of the rice gene homologous to the maize Vp1. Plant Mol Biol 24:805-810
17. Hill A, Nantel A, Rock CD, Quatrano RS (1996) A conserved domain of the viviparous-1 gene product enhances the DNA binding activity of the bZIP protein EmBP-1 and other transcription factors. J Biol Chem 271:3366-3374
18. Knight CD, Sehgal A, Atwal K, Wallace JC, Cove DJ, Coates D, Quatrano RS, Bahadur S, Stockley PG, Cuming AC (1995) Molecular responses to abscisic acid and stress are conserved between moss and cereals. Plant Cell 7:499-506
19. Koornneef M, Reuling G, Karssen CM (1984) The isolation and characterization of abscisic acid-insensitive mutants of Arabidopsis thaliana. Physiol Plant 61:377-383
20. Lanahan MB, Ho TH, Rogers SW, Rogers JC (1992) A gibberellin response complex in cereal alpha-amylase gene promoters. Plant Cell 4:203-211
21. Lazarova G, Zeng Y, Kermode AR (2002) Cloning and expression of an ABSCISIC ACID-INSENSITIVE 3 (ABI3) gene homologue of yellow-cedar (Chamaecyparis nootkatensis). J Exp Bot 53:1219-1221
22. Liu L, White MJ, MacRae TH (1999) Transcription factors and their genes in higher plants functional domains, evolution and regulation. Eur J Biochem 262:247-257
23. Luerssen H, Kirik V, Herrmann P, Misera S (1998) FUSCA3 encodes a protein with a conserved VP1/AB13-like B3 domain which is of functional importance for the regulation of seed maturation in Arabidopsis thaliana. Plant J 15:755-764
24. Marcotte WR Jr, Russell SH, Quatrano RS (1989) Abscisic acidresponsive sequences from the em gene of wheat. Plant Cell 1:969-976
25. Marella HH, Sakata Y, Quatrano RS (2006) Characterization and functional analysis of ABSCISIC ACID INSENSITIVE3-like genes from Physcomitrella patens. Plant J 46:1032-1044
26. McCarty DR, Hattori T, Carson CB, Vasil V, Lazar M, Vasil IK (1991) The Viviparous-1 developmental gene of maize encodes a novel transcriptional activator. Cell 66:895-905
27. Nag R, Maity MK, Dasgupta M (2005) Dual DNA binding property of ABA insensitive 3 like factors targeted to promoters responsive to ABA and auxin. Plant Mol Biol 59:821-838
28. Nakamura S, Lynch TJ, Finkelstein RR (2001) Physical interactions between ABA response loci of Arabidopsis. Plant J 26:627-635
29. Nambara E, Keith K, McCourt P, Naito S (1995) A regulatory role for the ABI3 gene in the establishment of embryo maturation in Arabidopsis thaliana. Development 121:629-636
30. Nambara E, Hayama R, Tsuchiya Y, Nishimura M, Kawaide H, Kamiya Y, Naito S (2000) The role of ABI3 and FUS3 loci in Arabidopsis thaliana on phase transition from late embryo development to germination. Dev Biol 220:412-423
31. Parcy F, Valon C, Kohara A, Misera S, Giraudat J (1997) The ABSCISIC ACID-INSENSITIVE3, FUSCA3, and LEAFY COTYLEDON1 loci act in concert to control multiple aspects of Arabidopsis seed development. Plant Cell 9:1265- 1277
32. Poon IK, Jans DA (2005) Regulation of nuclear transport: central role in development and transformation? TraYc 6:173-186
33. Riechmann JL, Heard J, Martin G, Reuber L, Jiang C, Keddie J, Adam L, Pineda O, RatcliVe OJ, Samaha RR, Creelman R, Pilgrim M, Broun P, Zhang JZ, Ghandehari D, Sherman BK, Yu G (2000) Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Science 290:2105- 2110
34. Robertson D (1955) The genetics of vivipary in maize. Genetics 40:745-760
35. Rohde A, Kurup S, Holdsworth M (2000) ABI3 emerges from the seed. Trends Plant Sci 5:418-419
36. Rohde A, Prinsen E, De Rycke R, Engler G, Van Montagu M, Boerjan W (2002) PtABI3 impinges on the growth and diVerentiation of embryonic leaves during bud set in poplar. Plant Cell 14:1885-1901
37. Shen Q, Uknes SJ, Ho TH (1993) Hormone response complex in a novel abscisic acid and cycloheximide-inducible barley gene. J Biol Chem 268:23652-23660
38. Sheng T, Chi S, Zhang X, Xie J (2006) Regulation of Gli1 localization by the cAMP/protein kinase A signaling axis through a site near the nuclear localization signal. J Biol Chem 281:9-12
39. Shiota H, Satoh R, Watabe K, Harada H, Kamada H (1998) CABI3, the carrot homologue of the Arabidopsis ABI3, is expressed during both zygotic and somatic embryogenesis and functions in the regulation of embryo-speciWc ABA-inducible genes. Plant Cell Physiol 39:1184-1193
40. Suzuki M, Kao CY, McCarty DR (1997) The conserved B3 domain of VIVIPAROUS1 has a cooperative DNA binding activity. Plant Cell 9:799-807
41. Suzuki M, Kao CY, Cocciolone S, McCarty DR (2001) Maize VP1 complements Arabidopsis abi3 and confers a novel ABA/auxin interaction in roots. Plant J 28:409-418
42. Varagona MJ, Raikhel NV (1994) The basic domain in the bZIP regulatory protein Opaque2 serves two independent functions: DNA binding and nuclear localization. Plant J 5:207-214
43. Varagona MJ, Schmidt RJ, Raikhel NV (1992) Nuclear localization signal(s) required for nuclear targeting of the maize regulatory protein Opaque-2. Plant Cell 4:1213-1227
44. Vasil V, Marcotte WR Jr, Rosenkrans L, Cocciolone SM, Vasil IK, Quatrano RS, McCarty DR (1995) Overlap of Viviparous1 (VP1) and abscisic acid response elements in the Em promoter: G-box elements are suYcient but not necessary for VP1 transactivation. Plant Cell 7:1511-1518
45. Waltner JK, Peterson FC, Lytle BL, Volkman BF (2005) Structure of the B3 domain from Arabidopsis thaliana protein At1g16640. Protein Sci 14:2478-2483
46. Weis K (2003) Regulating access to the genome: nucleocytoplasmic transport throughout the cell cycle. Cell 112:441- 451
47. Yamasaki K, Kigawa T, Inoue M, Tateno M, Yamasaki T, Yabuki T, Aoki M, Seki E, Matsuda T, Tomo Y, Hayami N, Terada T, Shirouzu M, Osanai T, Tanaka A, Seki M, Shinozaki K, Yokoyama S (2004) Solution structure of the B3 DNA binding domain of the Arabidopsis cold-responsive transcription factor RAV1. Plant Cell 16:3448-3459
48. Zentella R, Yamauchi D, Ho TH (2002) Molecular dissection of the gibberellin/abscisic acid signaling pathways by transiently expressed RNA interference in barley aleurone cells. Plant Cell 14:2289-2301