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Volumn 5, Issue 11, 2010, Pages

Characterization of the fecal microbiome from non-human wild primates reveals species specific microbial communities

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME RNA; BACTERIAL DNA; RNA 16S;

EID: 78649752538     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013963     Document Type: Article
Times cited : (179)

References (49)
  • 1
    • 33746669364 scopus 로고    scopus 로고
    • Molecular interactions between bacterial symbionts and their hosts
    • Dale C, Moran NA (2006) Molecular interactions between bacterial symbionts and their hosts. Cell 126: 453-65.
    • (2006) Cell , vol.126 , pp. 453-465
    • Dale, C.1    Moran, N.A.2
  • 2
    • 49649116592 scopus 로고    scopus 로고
    • How bacteria contributed to the evolution of multicellular animals?
    • In: Margaret JMcFall Ngai, ed., New York: Cambridge University Press
    • Hickman C (2005) How bacteria contributed to the evolution of multicellular animals? In: Margaret JMcFall Ngai, ed. The Influence of Cooperative Bacteria on Animal Host Biology. New York: Cambridge University Press. pp 3-35.
    • (2005) The Influence of Cooperative Bacteria On Animal Host Biology , pp. 3-35
    • Hickman, C.1
  • 3
    • 0035843993 scopus 로고    scopus 로고
    • Commensal host-bacterial relationships in the gut
    • Hooper LV, Gordon JI (2001) Commensal host-bacterial relationships in the gut. Science 292: 1115-8.
    • (2001) Science , vol.292 , pp. 1115-1118
    • Hooper, L.V.1    Gordon, J.I.2
  • 4
    • 67349250428 scopus 로고    scopus 로고
    • The gut microbiota shapes intestinal immune responses during health and disease
    • Round JL, Mazmanian SK (2009) The gut microbiota shapes intestinal immune responses during health and disease. Nat Rev Immunol 9: 313-23.
    • (2009) Nat Rev Immunol , vol.9 , pp. 313-323
    • Round, J.L.1    Mazmanian, S.K.2
  • 6
    • 0033566164 scopus 로고    scopus 로고
    • Human evolution. We are what we ate
    • Wood B, Brooks A (1999) Human evolution. We are what we ate. Nature 400: 219-220.
    • (1999) Nature , vol.400 , pp. 219-220
    • Wood, B.1    Brooks, A.2
  • 7
    • 33751069717 scopus 로고    scopus 로고
    • Diet in early Homo: A review of the evidence and a new model of adaptive versatility
    • Ungar PS, Grine FE, Teaford MF (2006) Diet in early Homo: A review of the evidence and a new model of adaptive versatility. Annual Review of Anthropology 35: 209-228.
    • (2006) Annual Review of Anthropology , vol.35 , pp. 209-228
    • Ungar, P.S.1    Grine, F.E.2    Teaford, M.F.3
  • 8
    • 0003140748 scopus 로고
    • The Expensive-Tissue Hypotheis
    • Aiello LC, Wheeler P (1995) The Expensive-Tissue Hypotheis. Curr Anthropol 36: 199-221.
    • (1995) Curr Anthropol , vol.36 , pp. 199-221
    • Aiello, L.C.1    Wheeler, P.2
  • 9
    • 0037308502 scopus 로고    scopus 로고
    • Dietary constraints on encephalization in primates
    • Fish JL, Lockwood CA (2003) Dietary constraints on encephalization in primates. Am J Phys Anthropol 120: 171-81.
    • (2003) Am J Phys Anthropol , vol.120 , pp. 171-181
    • Fish, J.L.1    Lockwood, C.A.2
  • 10
    • 58449125407 scopus 로고    scopus 로고
    • Genomics and evolution of heritable bacterial symbionts
    • Moran NA, McCutcheon JP, Nakabachi A (2008) Genomics and evolution of heritable bacterial symbionts. Annu Rev Genet 42: 165-90.
    • (2008) Annu Rev Genet , vol.42 , pp. 165-190
    • Moran, N.A.1    McCutcheon, J.P.2    Nakabachi, A.3
  • 11
    • 68749099591 scopus 로고    scopus 로고
    • Symbiont-mediated protection in insect hosts
    • Brownlie JC, Johnson KN (2009) Symbiont-mediated protection in insect hosts. Trends in Microbiology 17: 348-354.
    • (2009) Trends In Microbiology , vol.17 , pp. 348-354
    • Brownlie, J.C.1    Johnson, K.N.2
  • 12
    • 0036467992 scopus 로고    scopus 로고
    • Unseen forces: The influence of bacteria on animal development
    • McFall-Ngai MJ (2002) Unseen forces: the influence of bacteria on animal development. Dev Biol 242: 1-14.
    • (2002) Dev Biol , vol.242 , pp. 1-14
    • McFall-Ngai, M.J.1
  • 13
    • 0032438597 scopus 로고    scopus 로고
    • Regulation of symbiotic root nodule development
    • Schultze M, Kondorosi A (1998) Regulation of symbiotic root nodule development. Annu Rev Genet 32: 33-57.
    • (1998) Annu Rev Genet , vol.32 , pp. 33-57
    • Schultze, M.1    Kondorosi, A.2
  • 14
    • 22144490199 scopus 로고    scopus 로고
    • An immunomod-ulatory molecule of symbiotic bacteria directs maturation of the host immune system
    • Mazmanian SK, Liu CH, Tzianabos AO, Kasper DL (2005) An immunomod-ulatory molecule of symbiotic bacteria directs maturation of the host immune system. Cell 122: 107-18.
    • (2005) Cell , vol.122 , pp. 107-118
    • Mazmanian, S.K.1    Liu, C.H.2    Tzianabos, A.O.3    Kasper, D.L.4
  • 15
    • 17844404232 scopus 로고    scopus 로고
    • Gut microorganisms, mammalian metabolism and personalized health care
    • Nicholson JK, Holmes E, Wilson ID (2005) Gut microorganisms, mammalian metabolism and personalized health care. Nat Rev Microbiol 3: 431-438.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 431-438
    • Nicholson, J.K.1    Holmes, E.2    Wilson, I.D.3
  • 17
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, et al. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-31.
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5
  • 20
    • 77149149718 scopus 로고    scopus 로고
    • Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution
    • Oh PL, Benson AK, Peterson DA, Patil PB, Moriyama EN, et al. (2009) Diversification of the gut symbiont Lactobacillus reuteri as a result of host-driven evolution. ISME J 4: 377-87.
    • (2009) ISME J , vol.4 , pp. 377-387
    • Oh, P.L.1    Benson, A.K.2    Peterson, D.A.3    Patil, P.B.4    Moriyama, E.N.5
  • 23
    • 0242384034 scopus 로고    scopus 로고
    • Review and re-analysis of domain-specific 16S primers
    • Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55: 541-55.
    • (2003) J Microbiol Methods , vol.55 , pp. 541-555
    • Baker, G.C.1    Smith, J.J.2    Cowan, D.A.3
  • 24
    • 68549130740 scopus 로고    scopus 로고
    • Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys
    • Youssef N, Sheik CS, Krumholz LR, Najar FZ, Roe BA, et al. (2009) Comparison of species richness estimates obtained using nearly complete fragments and simulated pyrosequencing-generated fragments in 16S rRNA gene-based environmental surveys. Appl Environ Microbiol 75: 5227-36.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 5227-5236
    • Youssef, N.1    Sheik, C.S.2    Krumholz, L.R.3    Najar, F.Z.4    Roe, B.A.5
  • 26
    • 0027804103 scopus 로고
    • Non-parametric multivariate analyses of changes in community structure
    • Clarke KR (1993) Non-parametric multivariate analyses of changes in community structure. Australian Journal of Ecology 18: 117-143.
    • (1993) Australian Journal of Ecology , vol.18 , pp. 117-143
    • Clarke, K.R.1
  • 28
    • 34548293679 scopus 로고    scopus 로고
    • Näi{dotless}ve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
    • Wang Q, Garrity JM, Tiedje JM, Cole JR (2007) Näi{dotless}ve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy. Appl Environ Microbiol 73: 5261-7.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, J.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 29
    • 0038383120 scopus 로고    scopus 로고
    • Determinants of colobine monkey abundance: The importance of food energy, protein and fiber content
    • Wasserman MD, Chapman CA (2003) Determinants of colobine monkey abundance: the importance of food energy, protein and fiber content. J Anim Ecol 72: 650-659.
    • (2003) J Anim Ecol , vol.72 , pp. 650-659
    • Wasserman, M.D.1    Chapman, C.A.2
  • 30
    • 0012124827 scopus 로고    scopus 로고
    • Resource switching in guenons: A community analysis of dietary flexibility
    • In: Glenn, M, Cords, M, eds., New York: Kluwer Academic
    • Lambert J (2002) Resource switching in guenons: a community analysis of dietary flexibility. In: Glenn, M, Cords, M, eds. The Guenons: Diversity and Adaptation in African Monkeys. New York: Kluwer Academic. pp 303-317.
    • (2002) The Guenons: Diversity and Adaptation In African Monkeys , pp. 303-317
    • Lambert, J.1
  • 32
    • 77953340555 scopus 로고    scopus 로고
    • Fecal bacterial diversity of human-habituated wild chimpanzees (Pan troglodytes schweinfurthii) at Mahale Mountains National Park, Western Tanzania
    • Szekely BA, Singh J, Marsh TL, Hagedorn C, Werre SR, et al. (2010) Fecal bacterial diversity of human-habituated wild chimpanzees (Pan troglodytes schweinfurthii) at Mahale Mountains National Park, Western Tanzania.;Am J Primatol 72: 566-574.
    • (2010) Am J Primatol , vol.72 , pp. 566-574
    • Szekely, B.A.1    Singh, J.2    Marsh, T.L.3    Hagedorn, C.4    Werre, S.R.5
  • 33
    • 77954450173 scopus 로고    scopus 로고
    • Phylogenetic analysis of the fecal flora of the wild pygmy loris
    • Bo X, Zun-xi H, Xiao-yan W, Run-chi G, Xiang-hua T, et al. (2010) Phylogenetic analysis of the fecal flora of the wild pygmy loris. Am J Primatol 72: 699-706.
    • (2010) Am J Primatol , vol.72 , pp. 699-706
    • Bo, X.1    Zun-Xi, H.2    Xiao-Yan, W.3    Run-Chi, G.4    Xiang-Hua, T.5
  • 35
    • 34047185356 scopus 로고    scopus 로고
    • Molecular analyses of the intestinal microbiota of chimpanzees in the wild and in captivity
    • Uenishi G, Fujita S, Ohashi G, Kato A, Yamauchi S, et al. (2007) Molecular analyses of the intestinal microbiota of chimpanzees in the wild and in captivity. Am J Primatol 69: 367-376.
    • (2007) Am J Primatol , vol.69 , pp. 367-376
    • Uenishi, G.1    Fujita, S.2    Ohashi, G.3    Kato, A.4    Yamauchi, S.5
  • 36
    • 67650805670 scopus 로고    scopus 로고
    • Effects of high- and low-fiber diets on fecal fermentation and fecal microbial populations of captive chimpanzees
    • Kisidayová S, Váradyová Z, Pristas P, Piknová M, Nigutová K, et al. (2009) Effects of high- and low-fiber diets on fecal fermentation and fecal microbial populations of captive chimpanzees. Am J Primatol 71: 548-57.
    • (2009) Am J Primatol , vol.71 , pp. 548-557
    • Kisidayová, S.1    Váradyová, Z.2    Pristas, P.3    Piknová, M.4    Nigutová, K.5
  • 37
    • 77952158672 scopus 로고    scopus 로고
    • Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins
    • Turnbaugh PJ, Quince C, Faith JJ, McHardy AC, Yatsunenko T (2010) Organismal, genetic, and transcriptional variation in the deeply sequenced gut microbiomes of identical twins. Proc Natl Acad Sci U S A 107: 7503-8.
    • (2010) Proc Natl Acad Sci U S A , vol.107 , pp. 7503-7508
    • Turnbaugh, P.J.1    Quince, C.2    Faith, J.J.3    McHardy, A.C.4    Yatsunenko, T.5
  • 38
    • 56849106496 scopus 로고    scopus 로고
    • The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing
    • Dethlefsen L, Huse S, Sogin ML, Relman DA (2008) The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing. PLoS Biol 6: e280.
    • (2008) PLoS Biol , vol.6
    • Dethlefsen, L.1    Huse, S.2    Sogin, M.L.3    Relman, D.A.4
  • 39
    • 73349110099 scopus 로고    scopus 로고
    • Wrinkles in the rare biosphere: Pyrosequencing errors can lead to artificial inflation of diversity estimates
    • Kunin V, Engelbrektson A, Ochman H, Hugenholtz P (2010) Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates. Environ Microbiol 12: 118-23.
    • (2010) Environ Microbiol , vol.12 , pp. 118-123
    • Kunin, V.1    Engelbrektson, A.2    Ochman, H.3    Hugenholtz, P.4
  • 40
    • 33749997498 scopus 로고    scopus 로고
    • Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection
    • Rawls JF, Mahowald MA, Ley RE, Gordon JI (2006) Reciprocal gut microbiota transplants from zebrafish and mice to germ-free recipients reveal host habitat selection. Cell 127: 423-33.
    • (2006) Cell , vol.127 , pp. 423-433
    • Rawls, J.F.1    Mahowald, M.A.2    Ley, R.E.3    Gordon, J.I.4
  • 41
    • 78649739702 scopus 로고    scopus 로고
    • In: Primates in Perspective New York: Oxford University Press, 2nd Edition
    • Jaffe KE, Isbell LA (2007) African Colobine Monkeys and The Guenons. In: Primates in Perspective New York: Oxford University Press, 2nd Edition. pp 203-277.
    • (2007) African Colobine Monkeys and The Guenons , pp. 203-277
    • Jaffe, K.E.1    Isbell, L.A.2
  • 42
    • 0032852168 scopus 로고    scopus 로고
    • Diversity of extracellular proteolytic activities among Prevotella species from the rumen
    • Griswold KE, White BA, Mackie RI (1999) Diversity of extracellular proteolytic activities among Prevotella species from the rumen. Curr Microbiol 39: 187-94.
    • (1999) Curr Microbiol , vol.39 , pp. 187-194
    • Griswold, K.E.1    White, B.A.2    Mackie, R.I.3
  • 43
    • 41349093562 scopus 로고    scopus 로고
    • Plant cell wall breakdown by anaerobic microorganisms from the Mammalian digestive tract
    • Flint HJ, Bayer EA (2008) Plant cell wall breakdown by anaerobic microorganisms from the Mammalian digestive tract. Ann NY Acad Sci 1125: 280-8.
    • (2008) Ann NY Acad Sci , vol.1125 , pp. 280-288
    • Flint, H.J.1    Bayer, E.A.2
  • 44
    • 0028331531 scopus 로고
    • Role of structural and extracellular virulence factors in gram-negative anaerobic bacteria
    • Botta GA, Arzese A, Minisini R, Trani G (1994) Role of structural and extracellular virulence factors in gram-negative anaerobic bacteria. Clin Infect Dis Suppl 4: S260-4.
    • (1994) Clin Infect Dis Suppl , vol.4
    • Botta, G.A.1    Arzese, A.2    Minisini, R.3    Trani, G.4
  • 46
    • 50849133260 scopus 로고    scopus 로고
    • Forest fragmentation as cause of bacterial transmission among nonhuman primates, humans, and livestock, Uganda
    • Goldberg TL, Gillespie TR, Rwego IB, Estoff EL, Chapman CA (2008) Forest fragmentation as cause of bacterial transmission among nonhuman primates, humans, and livestock, Uganda. Emerg Infect Dis 14: 1375-82.
    • (2008) Emerg Infect Dis , vol.14 , pp. 1375-1382
    • Goldberg, T.L.1    Gillespie, T.R.2    Rwego, I.B.3    Estoff, E.L.4    Chapman, C.A.5
  • 47
    • 72949107142 scopus 로고    scopus 로고
    • Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities
    • Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, et al. (2009) Introducing mothur: Open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-41.
    • (2009) Appl Environ Microbiol , vol.75 , pp. 7537-7541
    • Schloss, P.D.1    Westcott, S.L.2    Ryabin, T.3    Hall, J.R.4    Hartmann, M.5
  • 48
    • 77949495216 scopus 로고    scopus 로고
    • A high-throughput DNA sequence aligner for microbial ecology studies
    • Schloss PD (2009) A high-throughput DNA sequence aligner for microbial ecology studies. PLoS ONE 4: e8230.
    • (2009) PLoS ONE , vol.4
    • Schloss, P.D.1
  • 49


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