메뉴 건너뛰기




Volumn 43, Issue 3, 2003, Pages 299-308

Differential detection of type II methanotrophic bacteria in acidic peatlands using newly developed 16S rRNA-targeted fluorescent oligonucleotide probes

Author keywords

Acidic peatlands; Fluorescent in situ hybridisation (FISH); Methylocapsa acidiphila; Methylocella palustris; Methylocystis sp.; Oligonucleotide probe; Type II methanotroph

Indexed keywords

ACIDOPHILY; BACTERIUM; DETECTION METHOD; METHANOTROPHY; MICROBIAL COMMUNITY; PEATLAND;

EID: 0037375288     PISSN: 01686496     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-6496(02)00436-1     Document Type: Article
Times cited : (68)

References (20)
  • 1
    • 0028971481 scopus 로고
    • Estimation of cell numbers of methanotrophic bacteria in boreal peatlands based on analysis of specific phospholipid fatty acids
    • Sundh I., Borda P., Nilsson M., Svensson B.H. Estimation of cell numbers of methanotrophic bacteria in boreal peatlands based on analysis of specific phospholipid fatty acids. FEMS Microbiol. Ecol. 18:1995;103-112.
    • (1995) FEMS Microbiol. Ecol. , vol.18 , pp. 103-112
    • Sundh, I.1    Borda, P.2    Nilsson, M.3    Svensson, B.H.4
  • 2
    • 0030298396 scopus 로고    scopus 로고
    • Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques
    • McDonald I.R., Hall G.H., Pickup R.W., Murrell J.C. Methane oxidation potential and preliminary analysis of methanotrophs in blanket bog peat using molecular ecology techniques. FEMS Microbiol. Ecol. 21:1996;197-211.
    • (1996) FEMS Microbiol. Ecol. , vol.21 , pp. 197-211
    • McDonald, I.R.1    Hall, G.H.2    Pickup, R.W.3    Murrell, J.C.4
  • 3
    • 0030872092 scopus 로고    scopus 로고
    • The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs
    • McDonald I.R., Murrell J.C. The methanol dehydrogenase structural gene mxaF and its use as a functional gene probe for methanotrophs and methylotrophs. Appl. Environ. Microbiol. 63:1997;3218-3224.
    • (1997) Appl. Environ. Microbiol. , vol.63 , pp. 3218-3224
    • McDonald, I.R.1    Murrell, J.C.2
  • 4
    • 0031573009 scopus 로고    scopus 로고
    • The particulate methane monooxygenase gene pmoA and its use as a functional gene probe for methanotrophs
    • McDonald I.R., Murrell J.C. The particulate methane monooxygenase gene pmoA and its use as a functional gene probe for methanotrophs. FEMS Microbiol. Lett. 156:1997;205-210.
    • (1997) FEMS Microbiol. Lett. , vol.156 , pp. 205-210
    • McDonald, I.R.1    Murrell, J.C.2
  • 5
    • 0025099312 scopus 로고
    • Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology
    • Amann R.I., Krumholz L., Stahl D.A. Fluorescent-oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172:1990;762-770.
    • (1990) J. Bacteriol. , vol.172 , pp. 762-770
    • Amann, R.I.1    Krumholz, L.2    Stahl, D.A.3
  • 6
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann R.I., Ludwig W., Schleifer K.-H. Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol. Rev. 59:1995;143-169.
    • (1995) Microbiol. Rev. , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.-H.3
  • 7
    • 0035489394 scopus 로고    scopus 로고
    • Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris
    • Dedysh S.N., Derakshani M., Liesack W. Detection and enumeration of methanotrophs in acidic Sphagnum peat by 16S rRNA fluorescence in situ hybridization, including the use of newly developed oligonucleotide probes for Methylocella palustris. Appl. Environ. Microbiol. 67:2001;4850-4857.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4850-4857
    • Dedysh, S.N.1    Derakshani, M.2    Liesack, W.3
  • 9
    • 0033988335 scopus 로고    scopus 로고
    • Fluorescent oligonucleotide rDNA probes for specific detection of methane oxidising bacteria
    • Bourne D.G., Holmes A.J., Iversen N., Murrell J.C. Fluorescent oligonucleotide rDNA probes for specific detection of methane oxidising bacteria. FEMS Microbiol. Ecol. 31:2000;29-38.
    • (2000) FEMS Microbiol. Ecol. , vol.31 , pp. 29-38
    • Bourne, D.G.1    Holmes, A.J.2    Iversen, N.3    Murrell, J.C.4
  • 10
    • 0035339207 scopus 로고    scopus 로고
    • Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation
    • Eller G., Stubner S., Frenzel P. Group-specific 16S rRNA targeted probes for the detection of type I and type II methanotrophs by fluorescence in situ hybridisation. FEMS Microbiol. Lett. 198:2001;91-97.
    • (2001) FEMS Microbiol. Lett. , vol.198 , pp. 91-97
    • Eller, G.1    Stubner, S.2    Frenzel, P.3
  • 11
    • 0036738269 scopus 로고    scopus 로고
    • Molecular phylogeny of type II methane-oxidizing bacteria isolated from various environments
    • Heyer J., Galchenko V.F., Dunfield P.F. Molecular phylogeny of type II methane-oxidizing bacteria isolated from various environments. Microbiology. 148:2002;2831-2846.
    • (2002) Microbiology , vol.148 , pp. 2831-2846
    • Heyer, J.1    Galchenko, V.F.2    Dunfield, P.F.3
  • 12
    • 0035490873 scopus 로고    scopus 로고
    • Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria
    • Gulledge J., Ahmad A., Steudler P.A., Pomerantz W.J., Cavanaugh C.M. Family- and genus-level 16S rRNA-targeted oligonucleotide probes for ecological studies of methanotrophic bacteria. Appl. Environ. Microbiol. 67:2001;4726-4733.
    • (2001) Appl. Environ. Microbiol. , vol.67 , pp. 4726-4733
    • Gulledge, J.1    Ahmad, A.2    Steudler, P.A.3    Pomerantz, W.J.4    Cavanaugh, C.M.5
  • 14
    • 0014793109 scopus 로고
    • Enrichment, isolation and some properties of methane-utilizing bacteria
    • Whittenbury R., Phillips K.C., Wilkinson T.F. Enrichment, isolation and some properties of methane-utilizing bacteria. J. Gen. Microbiol. 61:1970;205-218.
    • (1970) J. Gen. Microbiol. , vol.61 , pp. 205-218
    • Whittenbury, R.1    Phillips, K.C.2    Wilkinson, T.F.3
  • 15
    • 0031789907 scopus 로고    scopus 로고
    • Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes
    • Fuchs B.M., Wallner G., Beisker W., Schwippl I., Ludwig W., Amann R. Flow cytometric analysis of the in situ accessibility of Escherichia coli 16S rRNA for fluorescently labeled oligonucleotide probes. Appl. Environ. Microbiol. 64:1998;4973-4982.
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 4973-4982
    • Fuchs, B.M.1    Wallner, G.2    Beisker, W.3    Schwippl, I.4    Ludwig, W.5    Amann, R.6
  • 17
    • 0025294528 scopus 로고
    • Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations
    • Amann R.I., Binder B.J., Olson R.J., Chisholm S.W., Devereux R., Stahl D.A. Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations. Appl. Environ. Microbiol. 56:1990;1919-1925.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 1919-1925
    • Amann, R.I.1    Binder, B.J.2    Olson, R.J.3    Chisholm, S.W.4    Devereux, R.5    Stahl, D.A.6
  • 18
    • 0003341851 scopus 로고
    • Development and application of nucleic acid probes
    • (Stackebrandt, E. and Goodfellow, M., Eds.). Wiley, New York
    • Stahl, D.A. and Amann, R. (1991) Development and application of nucleic acid probes. In: Nucleic Acid Techniques in Bacterial Systematics (Stackebrandt, E. and Goodfellow, M., Eds.), pp. 205-248. Wiley, New York.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 205-248
    • Stahl, D.A.1    Amann, R.2
  • 19
    • 0027068041 scopus 로고
    • Phylogenetic oligonucleotide probes for the major subclasses of Proteobacteria: Problems and solutions
    • Manz W., Amann R., Ludwig W., Wagner M., Schleifer K.-H. Phylogenetic oligonucleotide probes for the major subclasses of Proteobacteria: problems and solutions. Syst. Appl. Microbiol. 15:1992;593-600.
    • (1992) Syst. Appl. Microbiol. , vol.15 , pp. 593-600
    • Manz, W.1    Amann, R.2    Ludwig, W.3    Wagner, M.4    Schleifer, K.-H.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.