Coraliomargarita akajimensis gen. nov., sp. nov., a novel member of the phylum 'Verrucomicrobia' isolated from seawater in Japan

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 5, 2007, Pages 959-963

  Yoon, Jaewoo ^a   Yasumoto Hirose, Mina ^b,c   Katsuta, Atsuko ^b   Sekiguchi, Hiroshi ^b   Matsuda, Satoru ^b   Kasai, Hiroaki ^b   Yokota, Akira ^a  

^a UNIVERSITY OF TOKYO   (Japan)

^b MARINE BIOTECHNOLOGY INSTITUTE   (Japan)

^c JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

CYTOSINE; DIAMINOPIMELIC ACID; FATTY ACID; GUANINE; MENAQUINONE; MURAMIC ACID; PEPTIDOGLYCAN; RNA 16S; WATER;

AEROBIC BACTERIUM; AMINO ACID ANALYSIS; ANIMAL CELL; ARTICLE; BACTERIAL CELL WALL; BACTERIUM CULTURE; BACTERIUM ISOLATION; CONTROLLED STUDY; CORAL; CORALIOMARGARITA AKAJIMENSIS; DNA CONTENT; GRAM NEGATIVE BACTERIUM; JAPAN; LIPID COMPOSITION; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYLUM; PRIORITY JOURNAL; SEA; SEQUENCE ANALYSIS; SEQUENCE HOMOLOGY; SPECIES IDENTIFICATION; STRAIN IDENTIFICATION; TAXONOMY;

BACTERIA; BACTERIAL PHYSIOLOGY; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CELL WALL; DIAMINOPIMELIC ACID; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; JAPAN; MICROSCOPY, ELECTRON, TRANSMISSION; MOLECULAR SEQUENCE DATA; MOVEMENT; MURAMIC ACIDS; PHYLOGENY; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPORES, BACTERIAL; VITAMIN K 2;

ANTHOZOA; BACTERIA (MICROORGANISMS); GALAXEA FASCICULARIS; NEGIBACTERIA; OPITUTACEAE; VERRUCOMICROBIA;

EID: 34249016262     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64755-0     Document Type: Article

References (23)

1. Chin, K.-J., Hahn, D., Hengtsmann, U., Liesack, W. & Janssen, P. H. (1999). Characterization and identification of numerically abundant culturable bacteria from the anoxic bulk soil of rice paddy microcosms. Appl Environ Microbiol 65, 5042-5049.
2. Chin, K.-J, LiesacK W. & Janssen, P. H. (2001). Opitutus terrae gen. nov., sp. nov., to accommodate novel strains of the division 'Verrucomicrobia' isolated from rice paddy soil. Int J Syst Evol Microbiol 51, 1965-1968.
3. Felsenstein, J. (1985). Confidence limits on phylogenies: An approach using the bootstrap. Evolution 39, 783-791.
4. Garrity, G. M. & Holt J. G. (2001). The road map to the Manual. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 1, pp. 119-166. Edited by D. R. Boone, R. W. Castenholz & G. M. Garrity. New York: Springer.
5. Harper, J. J. & Davis, G. H. G. (1979). Two-dimensional thin-layer chromatography for amino acid analysis of bacterial cell walls. Int J Syst Bacteriol 29, 56-58.
6. Hedlund, B. P., Gosink, J. J. & Staley, J. T. (1997). Verrucomicrobia div. nov., a new division of the bacteria containing three new species of Prothecobacter. Antonie van Leeuwenhoek 72, 29-38.
7. Hugenholtz, P., Goebel, B. M. & Pace, N. R. (1998). Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180, 4765-4774.
8. Janssen, P. H., Schuhmann, A., Mörschel, E. & Rainey, F. A. (1997). Novel anaerobic ultramicrobacteria belonging to the Verrucomicrobiales lineage of bacterial descent isolated by dilution culture from anoxic rice paddy soil. Appl Environ Microbiol 63, 1382-1388.
9. Katsuta, A., Adachi, K., Matsuda, S., Shizuri, Y. & Kasai, H. (2005). Ferrimonas marina sp. nov. Int J Syst Evol Microbiol 55, 1851-1855.
10. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
11. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
12. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
13. Murray, R. G. E., Doetsch, R. N. & Robinow, C. F. (1994). Determinative and cytological fight microscopy. In Methods for General and Molecular Bacteriology, pp. 21-4 1. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
14. Saitou, N. & Nei, M. (1987). The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
15. Saki, T., Ishizuka, K. & Kato, I. (2003). Isolation and characterization of a fucoidan-degrading marine bacterium. Mar Biotechnol 5, 409-416.
16. Sangwan, P., Chen, X., Hugenholtz, P. & Janssen, P. H. (2004). Chthoniobacter flavus gen. nov., sp. nov., the first pure-culture representative of subdivision two, Spartobacteria classis nov., of the phylum Verrucomicrobia. Appl Environ Microbiol 70, 5875-5881.
17. Sangwan, P., Kovac, S., Davis, K. E. R., Sait, M. & Janssen, P. H. (2005). Detection and cultivation of soil Verrucomicrobia. Appl Environ Microbiol 71, 8402-8410.
18. Schleifer, K. H. & Kandler, O. (1972). Peptidoglycan types of bacterial cell walls and their taxonomic implications. Bacteriol Rev 36, 407-477.
19. Shieh, W. Y. & Jean, W. D. (1998). Alterococcus agarolyticus, gen. nov., sp. nov., a halophilic thermophilic bacterium capable of agar degradation. Can J Microbiol 44, 637-645.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Vandekerckhove, T. T. M., Willems, A., Gillis, M. & Coomans, A. (2000). Occurrence of novel verrucomicrobial species, endosymbiotic and associated with parthenogenesis in Xiphinema americanum-group species (Nematoda, Longidoridae). Int J Syst Evol Microbiol 50, 2197-2205.
22. Weisburg, W. G., Barns, S. M., Pelletier, D. A. & Lane, D. J. (1991). 16S ribosomal DNA amplification for phylogenetic study. J Bacteriol 173, 697-703.
23. Yokota, A., Tamura, T., Nishii, T. & Hasegawa, T. (1993). Kineococcus aurantiacus gen. nov., sp. nov., a new aerobic, gram-positive, motile coccus with meso-diaminopimelic acid and arabinogalactan in the cell wall. Int J Syst Bacteriol 43, 52-57.