Vibrational analysis of amino acids and short peptides in hydrated media. VIII. Amino acids with aromatic side chains: L-phenylalanine, l-tyrosine, and l-tryptophan

Journal of Physical Chemistry B

Volumn 114, Issue 46, 2010, Pages 15319-15330

  Hernández, Belén ^a   Pflüger, Fernando ^a   Adenier, Alain ^b   Kruglik, Sergei G ^c   Ghomi, Mahmoud ^a  

^a UNIVERSITÉ PARIS 13   (France)

^b UNIVERSITÉ PARIS DIDEROT   (France)

^c SORBONNE UNIVERSITÉ   (France)

Author keywords

[No Author keywords available]

Indexed keywords

AROMATIC COMPOUNDS; AROMATIZATION; FOURIER TRANSFORMS; HYDRATES; HYDRATION; QUANTUM CHEMISTRY; QUANTUM THEORY; SOLUTIONS; VIBRATIONAL SPECTRA;

ACCUMULATION TIME; AQUEOUS SOLUTIONS; AROMATIC RINGS; AROMATIC SIDE CHAINS; ATTENUATED TOTAL REFLECTIONS; CONTINUUM SOLVENTS; ENERGY CONFORMERS; FOURIER TRANSFORM INFRARED ABSORPTION; FT-IR SPECTRUM; GEOMETRICAL FEATURES; L-HISTIDINE; L-PHENYLALANINE; L-TRYPTOPHAN; L-TYROSINE; LOW CONCENTRATIONS; LOW WATER; PHYSIOLOGICAL CONDITION; QUANTUM-MECHANICAL CALCULATION; ROOM TEMPERATURE; SIDE CHAINS; SOLID-PHASE; TORSION ANGLE; VIBRATIONAL ANALYSIS; VIBRATIONAL BEHAVIOR; VIBRATIONAL FEATURES; VIBRATIONAL MODES; WATER MOLECULE;

AMINO ACIDS;

EID: 78649543964     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp106786j     Document Type: Article

References (49)

1. Fürst, P.; Stehle, P. J. Nutr. 2004, 134, 1558S-1565S
2. Reeds, P. J. J. Nutr. 2000, 130, 1835S-1840S
3. Young, V. R. J. Nutr. 1994, 124, 1517S-1523S
4. Schulz, G. E.; Schrimer, R. H. Principles of Protein Structure; Cantor, R. H., Ed.; Springer-Verlag: New York, 1990.
5. Gonzalez, J.; Willis, M. S. Lab. Med. 2010, 41, 118-119
6. Ikeda, M. Adv. Biochem. Eng. Biotechnol. 2002, 79, 1-35
7. Redgrave, P.; Gurney, K. Nat. Rev. Neurosci. 2006, 7, 967-975
8. Ben-Jonathan, N.; Hnasko, R. Endocr. Rev. 2001, 22, 724-763
9. Manning, G.; Whyte, D. B.; Martinez, R.; Hunter, T.; Sudarsanam, S. Science 2002, 298, 1912-1934
10. Wang, J. C. Annu. Rev. Biochem. 1985, 54, 665-697
11. Radwanski, E. R.; Last, R. L. Plant. Cell. 1995, 7, 921-34
12. Fernstrom, J. D. Physiol. Rev. 1983, 63, 484-546
13. Schaechter, J. D.; Wurtman, R. J. Brain Res. 1990, 532, 203-210
14. Gollnick, P.; Babitzke, P.; Antson, A.; Yanofsky, C. Annu. Rev. Genet. 2005, 39, 47-68
15. Matthews, B. W.; Sigler, P. B.; Henderson, R.; Blow, D. M. Nature 1967, 214, 652-656
16. Blow, D. M.; Birktoft, J. J.; Hartley, B. S. Nature 1969, 221, 337-340
17. van Grondelle, W.; López Iglesias, C.; Coll, E.; Artzner, F.; Paternostre, M.; Lacombe, F.; Cardus, M.; Martinez, G.; Montes, M.; Cherif-Cheikh, R.; Valéry, C. J. Struct. Biol. 2007, 160, 211-223
18. Valéry, C.; Pouget, E.; Pandit, A.; Verbavatz, J. M.; Bordes, L.; Boisdé, I.; Cherif-Cheikh, R.; Artzner, F.; Paternostre, M. Biophys. J. 2008, 94, 1782-1795
19. McGaughey, G. B.; Gagne, M.; Rappe, A. K. J. Biol. Chem. 1998, 273, 15458-15463
20. Sal-Man, N.; Gerber, D.; Bloch, I.; Shai, Y. J. Biol. Chem. 2007, 282, 19753-19761
21. Principles of Fluorescence Spectroscopy, 2nd ed.; Lakowicz, J. R., Ed.; Kluwer Academic/Plenum Publishers: New York, 1999.
22. New trends in Fluorescence Spectroscopy; Valeur, B.; Bronchon, J. C., Eds.; Springer-Verlag: Berlin, 2001.
23. Denk, W.; Strickler, J.; Webb, W. Science 1990, 248, 73-76
24. Denk, W.; Svoboda, K. Neuron 1997, 18, 351-357
25. Helmchen, F.; Denk, W. Nat. Methods 2005, 2, 932-940
26. Dunker, A. K.; Williams, R. W.; Peticolas, W. L. J. Biol. Chem. 1979, 254, 6444-6448
27. Aubrey, K. L.; Thomas, G. J., Jr. Biophys. J. 1991, 60, 1337-1349
28. Barth, A. Prog. Biophys. Mol. Biol. 2000, 74, 141-173
29. Derbel, N.; Hernández, B.; Pflüger, F.; Liquier, J.; Geinguenaud, F.; Jaïdane, N.; Ben Lakhdar, Z.; Ghomi, M. J. Phys. Chem. B 2007, 111, 1470-1477
30. Hernández, B.; Pflüger, F.; Nsangou, M.; Ghomi, M. J. Phys. Chem. B 2009, 113, 3169-3178
31. Hernández, B.; Pflüger, F.; Derbel, N.; De Coninck, J.; Ghomi, M. J. Phys. Chem. B 2010, 114, 1077-1088
32. Pflüger, F.; Hernández, B.; Ghomi, M. J. Phys. Chem. B 2010, 114, 9072-9083
33. Wolpert, M.; Hellwig, P. Spectrochim. Acta A 2006, 64, 987-1001
34. Stewart, S.; Fredericks, P. M. Spectrochim. Acta A 1999, 55, 1641-1660
35. Jákli, I.; Perczel, A.; Farkasa, Ö.; Hollósi, M.; Csizmadia, I. G. J. Mol. Struct. (THEOCHEM) 1998, 455, 303-314
36. Huang, Z.; Yu, W.; Lin, Z. J. Mol. Struct. (THEOCHEM) 2006, 758, 195-202
37. Rodziewicz, P.; Doltsinic, N. L. ChemPhysChem 2007, 8, 1959-1968
38. Lakard, B. J. Mol. Struct. (THEOCHEM) 2004, 681, 183-189
39. Zhang, M.; Huang, Z.; Lin, Z. J. Chem. Phys. 2005, 122, 134313-134319
40. Sobolewski, A. L.; Shemesh, D.; Domcke, W. J. Chem. Phys. A 2009, 113, 542-550
41. Gao, B.; Wyttenbach, T.; Bowers, M. T. J. Am. Chem. Soc. 2009, 131, 4695-4701
42. Kohn, W.; Sham, L. J. Phys. Rev. 1965, 140, A1133-A1138
43. Becke, A. D. J. Chem. Phys. 1993, 98, 5648-5652
44. Lee, C.; Yang, W.; Parr, R. G. Phys. Rev. B 1988, 37, 785-789
45. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Montgomery, Jr., J. A.; Vreven, T.; Kudin, K. N.; Burant, J. C.; Millam, J. M.; Iyengar, S. S.; Tomasi, J.; Barone, V.; Mennucci, B.; Cossi, M.; Scalmani, G.; Rega, N.; Petersson, G. A.; Nakatsuji, H.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Klene, M.; Li, X.; Knox, J. E.; Hratchian, H. P.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Ayala, P. Y.; Morokuma, K.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Zakrzewski, V. G.; Dapprich, S.; Daniels, A. D.; Strain, M. C.; Farkas, O.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Ortiz, J. V.; Cui, Q.; Baboul, A. G.; Clifford, S.; Cioslowski, J.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Challacombe, M.; Gill, P. M. W.; Johnson, B.; Chen, W.; Wong, M. W.; Gonzalez, C.; Pople, J. A. Gaussian 03, Revision C.02; Gaussian, Inc.: Wallingford, CT, 2004.
46. Barone, V.; Cossi, M. J. Phys. Chem. A 1998, 102, 1995-2001
47. Cossi, M.; Rega, G.; Scalmani, G.; Barone, V. J. Comput. Chem. 2003, 24, 669-681
48. Hernández, B.; Carelli, C.; Coïc, Y. M.; De Coninck, J.; Ghomi, M. J. Phys. Chem. B 2009, 113, 12796-12803
49. Fernández-Recio, J.; Vázquez, A.; Civera, C.; Sevilla, P.; Sancho, J. J. Mol. Biol. 1997, 267, 184-197