Neurogenesis

Methods in Cell Biology

Volumn 100, Issue C, 2010, Pages 72-126

  Chapouton, Prisca ^a   Godinho, Leanne ^b  

^a INSTITUTE OF EPIDEMIOLOGY   (Germany)

^b TECHNICAL UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; ARTICLE; BRAIN; CYTOLOGY; METHODOLOGY; NERVOUS SYSTEM DEVELOPMENT; NEUROBIOLOGY; ZEBRA FISH;

ANIMALS; BRAIN; NEUROBIOLOGY; NEUROGENESIS; ZEBRAFISH;

EID: 78649478528     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-384892-5.00004-9     Document Type: Book

References (403)

1. Adolf B., Bellipanni G., Huber V., Bally-Cuif L. atoh1.2 and beta3.1 are two new bHLH-encoding genes expressed in selective precursor cells of the zebrafish anterior hindbrain. Gene Expr. Patterns 2004, 5:35-41.
2. Adolf B., Chapouton P., Lam C.S., Topp S., Tannhauser B., Strahle U., Gotz M., Bally-Cuif L. Conserved and acquired features of adult neurogenesis in the zebrafish telencephalon. Dev. Biol. 2006, 295:278-293.
3. Ahn D., Ruvinsky I., Oates A., Silver L., Ho R. tbx20, a new vertebrate T-box gene expressed in the cranial motor neurons and developing cardiovascular structures in zebrafish. Mech. Dev. 2000, 95:253-258.
4. Aizawa H., Goto M., Sato T., Okamoto H. Temporally regulated asymmetric neurogenesis causes left-right difference in the zebrafish habenular structures. Dev. Cell 2007, 12:87-98.
5. Akimenko M.A., Ekker M., Wegner J., Lin W., Westerfield M. Combinatorial expression of three zebrafish genes related to distal-less: Part of a homeobox gene code for the head. J. Neurosci. 1994, 14:3475-3486.
6. Alexandre P., Reugels A.M., Barker D., Blanc E., Clarke J.D. Neurons derive from the more apical daughter in asymmetric divisions in the zebrafish neural tube. Nat. Neurosci. 2010, 13:673-679.
7. Allende M.L., Amsterdam A., Becker T., Kawakami K., Gaiano N., Hopkins N. Insertional mutagenesis in zebrafish identifies two novel genes, pescadillo and dead eye, essential for embryonic development. Genes Dev. 1996, 10:3141-3155.
8. Allende M.L., Weinberg E.S. The expression pattern of two zebrafish achaete-scute homolog (ash) genes is altered in the embryonic brain of the cyclops mutant. Dev. Biol. 1994, 166:509-530.
9. Alunni A., Hermel J.M., Heuze A., Bourrat F., Jamen F., Joly J.S. Evidence for neural stem cells in the medaka optic tectum proliferation zones. Dev. Neurobiol. 2010, 70:693-713.
10. Amoyel M., Cheng Y.C., Jiang Y.J., Wilkinson D.G. Wnt1 regulates neurogenesis and mediates lateral inhibition of boundary cell specification in the zebrafish hindbrain. Development 2005, 132:775-785.
11. Amsterdam A., Burgess S., Golling G., Chen W., Sun Z., Townsend K., Farrington S., Haldi M., Hopkins N. A large-scale insertional mutagenesis screen in zebrafish. Genes Dev. 1999, 13:2713-2724.
12. Amsterdam A., Lai K., Komisarczuk A.Z., Becker T.S., Bronson R.T., Hopkins N., Lees J.A. Zebrafish Hagoromo mutants up-regulate fgf8 postembryonically and develop neuroblastoma. Mol. Cancer Res. 2009, 7:841-850.
13. Andermann P., Weinberg E. Expression of zTlxA, a Hox11-like gene, in early differentiating embryonic neurons and cranial sensory ganglia of the zebrafish embryo. Dev. Dyn. 2001, 222:595-610.
14. Ando R., Hama H., Yamamoto-Hino M., Mizuno H., Miyawaki A. An optical marker based on the UV-induced green-to-red photoconversion of a fluorescent protein. Proc. Natl. Acad. Sci. U.S.A. 2002, 99:12651-12656.
15. Appel B., Fritz A., Westerfield M., Grunwald D.J., Eisen J.S., Riley B.B. Delta-mediated specification of midline cell fates in zebrafish embryos. Curr. Biol. 1999, 9:247-256.
16. Appel B., Givan L.A., Eisen J.S. Delta-Notch signaling and lateral inhibition in zebrafish spinal cord development. BMC Dev. Biol. 2001, 1:13.
17. Appel B., Korzh V., Glasgow E., Thor S., Edlund T., Dawid I.B., Eisen J.S. Motoneuron fate specification revealed by patterned LIM homeobox gene expression in embryonic zebrafish. Development 1995, 121:4117-4125.
18. Aramaki S., Hatta K. Visualizing neurons one-by-one in vivo: Optical dissection and reconstruction of neural networks with reversible fluorescent proteins. Dev. Dyn. 2006, 235:2192-2199.
19. Artinger K.B., Chitnis A.B., Mercola M., Driever W. Zebrafish narrowminded suggests a genetic link between formation of neural crest and primary sensory neurons. Development 1999, 126:3969-3979.
20. Asakawa K., Kawakami K. The Tol2-mediated Gal4-UAS method for gene and enhancer trapping in zebrafish. Methods 2009, 49:275-281.
21. Asakawa K., Suster M.L., Mizusawa K., Nagayoshi S., Kotani T., Urasaki A., Kishimoto Y., Hibi M., Kawakami K. Genetic dissection of neural circuits by Tol2 transposon-mediated Gal4 gene and enhancer trapping in zebrafish. Proc. Natl. Acad. Sci. U.S.A. 2008, 105:1255-1260.
22. Bae Y.K., Kani S., Shimizu T., Tanabe K., Nojima H., Kimura Y., Higashijima S., Hibi M. Anatomy of zebrafish cerebellum and screen for mutations affecting its development. Dev. Biol. 2009, 330:406-426.
23. Bae Y.K., Shimizu T., Hibi M. Patterning of proneuronal and inter-proneuronal domains by hairy- and enhancer of split-related genes in zebrafish neuroectoderm. Development 2005, 132:1375-1385.
24. Bae Y.K., Shimizu T., Yabe T., Kim C.H., Hirata T., Nojima H., Muraoka O., Hirano T., Hibi M. A homeobox gene, pnx, is involved in the formation of posterior neurons in zebrafish. Development 2003, 130:1853-1865.
25. Bai Q., Burton E.A. Cis-acting elements responsible for dopaminergic neuron-specific expression of zebrafish slc6a3 (dopamine transporter) in vivo are located remote from the transcriptional start site. Neuroscience 2009, 164:1138-1151.
26. Bai Q., Garver J.A., Hukriede N.A., Burton E.A. Generation of a transgenic zebrafish model of Tauopathy using a novel promoter element derived from the zebrafish eno2 gene. Nucleic Acids Res. 2007, 35:6501-6516.
27. Bai Q., Wei X., Burton E.A. Expression of a 12-kb promoter element derived from the zebrafish enolase-2 gene in the zebrafish visual system. Neurosci. Lett. 2009, 449:252-257.
28. Bally-Cuif L., Dubois L., Vincent A. Molecular cloning of Zcoe2, the zebrafish homolog of Xenopus Xcoe2 and mouse EBF-2, and its expression during primary neurogenesis. Mech. Dev. 1998, 77:85-90.
29. Barth K.A., Kishimoto Y., Rohr K.B., Seydler C., Schulte-Merker S., Wilson S.W. Bmp activity establishes a gradient of positional information throughout the entire neural plate. Development 1999, 126:4977-4987.
30. Baye L.M., Link B.A. The disarrayed mutation results in cell cycle and neurogenesis defects during retinal development in zebrafish. BMC Dev. Biol. 2007, 7:28.
31. Baye L.M., Link B.A. Interkinetic nuclear migration and the selection of neurogenic cell divisions during vertebrate retinogenesis. J. Neurosci. 2007, 27:10143-10152.
32. Becker T., Bernhardt R.R., Reinhard E., Wullimann M.F., Tongiorgi E., Schachner M. Readiness of zebrafish brain neurons to regenerate a spinal axon correlates with differential expression of specific cell recognition molecules. J. Neurosci. 1998, 18:5789-5803.
33. Bellipanni G., Rink E., Bally-Cuif L. Cloning of two tryptophane hydroxylase genes expressed in the diencephalon of the developing zebrafish brain. Mech. Dev. 2002, 119S:S215-S220.
34. Belting H.G., Hauptmann G., Meyer D., Abdelilah-Seyfried S., Chitnis A., Eschbach C., Soll I., Thisse C., Thisse B., Artinger K.B., et al. spiel ohne grenzen/pou2 is required during establishment of the zebrafish midbrain-hindbrain boundary organizer. Development 2001, 128:4165-4176.
35. Berberoglu M.A., Dong Z., Mueller T., Guo S. fezf2 expression delineates cells with proliferative potential and expressing markers of neural stem cells in the adult zebrafish brain. Gene Expr. Patterns 2009, 9:411-422.
36. Bernardos R.L., Barthel L.K., Meyers J.R., Raymond P.A. Late-stage neuronal progenitors in the retina are radial Muller glia that function as retinal stem cells. J. Neurosci. 2007, 27:7028-7040.
37. Bernardos R.L., Raymond P.A. GFAP transgenic zebrafish. Gene Expr. Patterns 2006, 6:1007-1013.
38. Bernhardt R.R., Chitnis A.B., Lindamer L., Kuwada J.Y. Identification of spinal neurons in the embryonic and larval zebrafish. J. Comp. Neurol. 1990, 302:603-616.
39. Bianco I.H., Carl M., Russell C., Clarke J.D., Wilson S.W. Brain asymmetry is encoded at the level of axon terminal morphology. Neural Dev. 2008, 3:9.
40. Bit-Avragim N., Hellwig N., Rudolph F., Munson C., Stainier D.Y., Abdelilah-Seyfried S. Divergent polarization mechanisms during vertebrate epithelial development mediated by the Crumbs complex protein Nagie oko. J. Cell. Sci. 2008, 121:2503-2510.
41. Blader P., Fischer N., Gradwohl G., Guillemot F., Strahle U. The activity of neurogenin1 is controlled by local cues in the zebrafish embryo. Development 1997, 124:4557-4569.
42. Blader P., Lam C.S., Rastegar S., Scardigli R., Nicod J.C., Simplicio N., Plessy C., Fischer N., Schuurmans C., Guillemot F., et al. Conserved and acquired features of neurogenin1 regulation. Development 2004, 131:5627-5637.
43. Blake T., Adya N., Kim C.H., Oates A.C., Zon L., Chitnis A., Weinstein B.M., Liu P.P. Zebrafish homolog of the leukemia gene CBFB: Its expression during embryogenesis and its relationship to scl and gata-1 in hematopoiesis. Blood 2000, 96:4178-4184.
44. Blechman J., Borodovsky N., Eisenberg M., Nabel-Rosen H., Grimm J., Levkowitz G. Specification of hypothalamic neurons by dual regulation of the homeodomain protein Orthopedia. Development 2007, 134:4417-4426.
45. Blin M., Norton W., Bally-Cuif L., Vernier P. NR4A2 controls the differentiation of selective dopaminergic nuclei in the zebrafish brain. Mol. Cell. Neurosci. 2008, 39:592-604.
46. Bourguignon C., Li J., Papalopulu N. XBF-1, a winged helix transcription factor with dual activity, has a role in positioning neurogenesis in Xenopus competent ectoderm. Development 1998, 125:4889-4900.
47. Bray S., Furriols M. Notch pathway: Making sense of suppressor of hairless. Curr. Biol. 2001, 11:R217-R221.
48. Bridgewater J.A., Springer C.J., Knox R.J., Minton N.P., Michael N.P., Collins M.K. Expression of the bacterial nitroreductase enzyme in mammalian cells renders them selectively sensitive to killing by the prodrug CB1954. Eur. J. Cancer 1995, 31A:2362-2370.
49. Bulina M.E., Lukyanov K.A., Britanova O.V., Onichtchouk D., Lukyanov S., Chudakov D.M. Chromophore-assisted light inactivation (CALI) using the phototoxic fluorescent protein KillerRed. Nat. Protoc. 2006, 1:947-953.
50. Bylund M., Andersson E., Novitch B.G., Muhr J. Vertebrate neurogenesis is counteracted by Sox1-3 activity. Nat. Neurosci. 2003, 6:1162-1168.
51. Canger A., Passini M., Asch W., Leake D., Zafonte B., Glasgow E., Schechter N. Restricted expression of the neuronal intermediate filament protein plasticin during zebrafish development. J. Comp. Neurol. 1998, 399:561-572.
52. Caron S.J., Prober D., Choy M., Schier A.F. In vivo birthdating by BAPTISM reveals that trigeminal sensory neuron diversity depends on early neurogenesis. Development 2008, 135:3259-3269.
53. Cau E., Quillien A., Blader P. Notch resolves mixed neural identities in the zebrafish epiphysis. Development 2008, 135:2391-2401.
54. Cerda G.A., Thomas J.E., Allende M.L., Karlstrom R.O., Palma V. Electroporation of DNA, RNA, and morpholinos into zebrafish embryos. Methods 2006, 39:207-211.
55. Cerveny K.L., Cavodeassi F., Turner K.J., de Jong-Curtain T.A., Heath J.K., Wilson S.W. The zebrafish flotte lotte mutant reveals that the local retinal environment promotes the differentiation of proliferating precursors emerging from their stem cell niche. Development 2010, 137:2107-2115.
56. Chaplin N., Tendeng C., Wingate R.J. Absence of an external germinal layer in zebrafish and shark reveals a distinct, anamniote ground plan of cerebellum development. J. Neurosci. 2010, 30:3048-3057.
57. Chapouton P., Adolf B., Leucht C., Tannhauser B., Ryu S., Driever W., Bally-Cuif L. her5 expression reveals a pool of neural stem cells in the adult zebrafish midbrain. Development 2006, 133:4293-4303.
58. Chapouton P., Jagasia R., Bally-Cuif L. Adult neurogenesis in non-mammalian vertebrates. Bioessays 2007, 29:745-757.
59. Chapouton P., Skupien P., Hesl B., Coolen M., Moore J.C., Madelaine R., Kremmer E., Faus-Kessler T., Blader P., Lawson N.D., et al. Notch activity levels control the balance between quiescence and recruitment of adult neural stem cells. J. Neurosci. 2010, 30:7961-7974.
60. Chen W., Burgess S., Hopkins N. Analysis of the zebrafish smoothened mutant reveals conserved and divergent functions of hedgehog activity. Development 2001, 128:2385-2396.
61. Chong S., Emelyanov A., Gong Z., Korzh V. Expression pattern of two zebrafish genes, cxcr4a and cxcr4b. Mech. Dev. 2001, 109:347-354.
62. Chong S.W., Nguyen T.T., Chu L.T., Jiang Y.J., Korzh V. Zebrafish id2 developmental expression pattern contains evolutionary conserved and species-specific characteristics. Dev. Dyn. 2005, 234:1055-1063.
63. Choo B.G., Kondrichin I., Parinov S., Emelyanov A., Go W., Toh W.C., Korzh V. Zebrafish transgenic Enhancer TRAP line database (ZETRAP). BMC Dev. Biol. 2006, 6:5.
64. Collins R.T., Linker C., Lewis J. MAZe: A tool for mosaic analysis of gene function in zebrafish. Nat. Methods 2010, 7:219-223.
65. Cooper M.S., Szeto D.P., Sommers-Herivel G., Topczewski J., Solnica-Krezel L., Kang H.C., Johnson I., Kimelman D. Visualizing morphogenesis in transgenic zebrafish embryos using BODIPY TR methyl ester dye as a vital counterstain for GFP. Dev. Dyn. 2005, 232:359-368.
66. Curado S., Stainier D.Y., Anderson R.M. Nitroreductase-mediated cell/tissue ablation in zebrafish: A spatially and temporally controlled ablation method with applications in developmental and regeneration studies. Nat. Protoc. 2008, 3:948-954.
67. Das T., Payer B., Cayouette M., Harris W.A. In vivo time-lapse imaging of cell divisions during neurogenesis in the developing zebrafish retina. Neuron 2003, 37:597-609.
68. Davison J.M., Akitake C.M., Goll M.G., Rhee J.M., Gosse N., Baier H., Halpern M.E., Leach S.D., Parsons M.J. Transactivation from Gal4-VP16 transgenic insertions for tissue-specific cell labeling and ablation in zebrafish. Dev. Biol. 2007, 304:811-824.
69. de Graaf M., Zivkovic D., Joore J. Hormone-inducible expression of secreted factors in zebrafish embryos. Dev. Growth Differ. 1998, 40:577-582.
70. de Martino S., Yan Y.L., Jowett T., Postlethwait J.H., Varga Z.M., Ashworth A., Austin C.A. Expression of sox11 gene duplicates in zebrafish suggests the reciprocal loss of ancestral gene expression patterns in development. Dev. Dyn. 2000, 217:279-292.
71. Dee C.T., Hirst C.S., Shih Y.H., Tripathi V.B., Patient R.K., Scotting P.J. Sox3 regulates both neural fate and differentiation in the zebrafish ectoderm. Dev. Biol. 2008, 320:289-301.
72. Devos N., Deflorian G., Biemar F., Bortolussi M., Martial J., Peers B., Argenton F. Differential expression of two somatostatin genes during zebrafish embryonic development. Mech. Dev. 2002, 115:133-137.
73. Dickmeis T., Rastegar S., Lam C.S., Aanstad P., Clark M., Fischer N., Rosa F., Korzh V., Strahle U. Expression of the helix-loop-helix gene id3 in the zebrafish embryo. Mech. Dev. 2002, 113:99-102.
74. Diks S.H., Sartori da Silva M.A., Hillebrands J.L., Bink R.J., Versteeg H.H., Van Rooijen C., Brouwers A., Chitnis A.B., Peppelenbosch M.P., Zivkovic D. d-Asb11 is an essential mediator of canonical Delta-Notch signalling. Nat. Cell Biol. 2008, 10:1190-1198.
75. Distel M., Wullimann M.F., Koster R.W. Optimized Gal4 genetics for permanent gene expression mapping in zebrafish. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:13365-13370.
76. Dornseifer P., Takke C., Campos-Ortega J.A. Overexpression of a zebrafish homologue of the Drosophila neurogenic gene Delta perturbs differentiation of primary neurons and somite development. Mech. Dev. 1997, 63:159-171.
77. Dorsky R.I., Sheldahl L.C., Moon R.T. A transgenic Lef1/beta-catenin-dependent reporter is expressed in spatially restricted domains throughout zebrafish development. Dev. Biol. 2002, 241:229-237.
78. Doyon Y., McCammon J.M., Miller J.C., Faraji F., Ngo C., Katibah G.E., Amora R., Hocking T.D., Zhang L., Rebar E.J., et al. Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases. Nat. Biotechnol. 2008, 26:702-708.
79. Du S.J., Dienhart M. Zebrafish tiggy-winkle hedgehog promoter directs notochord and floor plate green fluorescence protein expression in transgenic zebrafish embryos. Dev. Dyn. 2001, 222:655-666.
80. Dutton K.A., Pauliny A., Lopes S.S., Elworthy S., Carney T.J., Rauch J., Geisler R., Haffter P., Kelsh R.N. Zebrafish colourless encodes sox10 and specifies non-ectomesenchymal neural crest fates. Development 2001, 128:4113-4125.
81. Ellingsen S., Laplante M.A., Konig M., Kikuta H., Furmanek T., Hoivik E.A., Becker T.S. Large-scale enhancer detection in the zebrafish genome. Development 2005, 132:3799-3811.
82. Emelyanov A., Parinov S. Mifepristone-inducible LexPR system to drive and control gene expression in transgenic zebrafish. Dev. Biol. 2008, 320:113-121.
83. Eriksson K.S., Peitsaro N., Karlstedt K., Kaslin J., Panula P. Development of the histaminergic neurons and expression of histidine decarboxylase mRNA in the zebrafish brain in the absence of all peripheral histaminergic systems. Eur. J. Neurosci. 1998, 10:3799-3812.
84. Ertzer R., Muller F., Hadzhiev Y., Rathnam S., Fischer N., Rastegar S., Strahle U. Cooperation of sonic hedgehog enhancers in midline expression. Dev. Biol. 2007, 301:578-589.
85. Esengil H., Chang V., Mich J.K., Chen J.K. Small-molecule regulation of zebrafish gene expression. Nat. Chem. Biol. 2007, 3:154-155.
86. Fadool J.M. Development of a rod photoreceptor mosaic revealed in transgenic zebrafish. Dev. Biol. 2003, 258:277-290.
87. Fashena D., Westerfield M. Secondary motoneuron axons localize DM-GRASP on their fasciculated segments. J. Comp. Neurol. 1999, 406:415-424.
88. Fausett B.V., Goldman D. A role for alpha1 tubulin-expressing Muller glia in regeneration of the injured zebrafish retina. J. Neurosci. 2006, 26:6303-6313.
89. Fausett B.V., Gumerson J.D., Goldman D. The proneural basic helix-loop-helix gene ascl1a is required for retina regeneration. J. Neurosci. 2008, 28:1109-1117.
90. Feldman B., Dougan S.T., Schier A.F., Talbot W.S. Nodal-related signals establish mesendodermal fate and trunk neural identity in zebrafish. Curr. Biol. 2000, 10:531-534.
91. Feng B., Bulchand S., Yaksi E., Friedrich R.W., Jesuthasan S. The recombination activation gene 1 (Rag1) is expressed in a subset of zebrafish olfactory neurons but is not essential for axon targeting or amino acid detection. BMC Neurosci. 2005, 6:46.
92. Filippi A., Durr K., Ryu S., Willaredt M., Holzschuh J., Driever W. Expression and function of nr4a2, lmx1b, and pitx3 in zebrafish dopaminergic and noradrenergic neuronal development. BMC Dev. Biol. 2007, 7:135.
93. Fimbel S.M., Montgomery J.E., Burket C.T., Hyde D.R. Regeneration of inner retinal neurons after intravitreal injection of ouabain in zebrafish. J. Neurosci. 2007, 27:1712-1724.
94. Fjose A., Izpisua-Belmonte J.C., Fromental-Ramain C., Duboule D. Expression of the zebrafish gene hlx-1 in the prechordal plate and during CNS development. Development 1994, 120:71-81.
95. Fjose A., Zhao X.F. Inhibition of the microRNA pathway in zebrafish by siRNA. Methods Mol. Biol. 2010, 629:239-255.
96. Flanagan-Steet H., Fox M.A., Meyer D., Sanes J.R. Neuromuscular synapses can form in vivo by incorporation of initially aneural postsynaptic specializations. Development 2005, 132:4471-4481.
97. Furthauer M., Reifers F., Brand M., Thisse B., Thisse C. sprouty4 acts in vivo as a feedback-induced antagonist of FGF signaling in zebrafish. Development 2001, 128:2175-2186.
98. Gahtan E., Baier H. Of lasers, mutants, and see-through brains: Functional neuroanatomy in zebrafish. J. Neurobiol. 2004, 59:147-161.
99. Ganz J., Kaslin J., Hochmann S., Freudenreich D., Brand M. Heterogeneity and Fgf dependence of adult neural progenitors in the zebrafish telencephalon. Glia 2010, 58:1345-1363.
100. Geling A., Itoh M., Tallafuss A., Chapouton P., Tannhauser B., Kuwada J.Y., Chitnis A.B., Bally-Cuif L. bHLH transcription factor Her5 links patterning to regional inhibition of neurogenesis at the midbrain-hindbrain boundary. Development 2003, 130:1591-1604.
101. Geling A., Plessy C., Rastegar S., Strahle U., Bally-Cuif L. Her5 acts as a prepattern factor that blocks neurogenin1 and coe2 expression upstream of Notch to inhibit neurogenesis at the midbrain-hindbrain boundary. Development 2004, 131:1993-2006.
102. Geling A., Steiner H., Willem M., Bally-Cuif L., Haass C. A gamma-secretase inhibitor blocks Notch signaling in vivo and causes a severe neurogenic phenotype in zebrafish. EMBO Rep. 2002, 3:688-694.
103. Girard F., Cremazy F., Berta P., Renucci A. Expression pattern of the Sox31 gene during Zebrafish embryonic development. Mech. Dev. 2001, 100:71-73.
104. Glasgow E., Karavanov A., Dawid I. Neuronal and neuroendocrine expression of lim3, a lim class homeobox gene, is altered in mutant zebrafish with axial signaling defects. Dev. Biol. 1997, 192:405-419.
105. Godinho L., Mumm J.S., Williams P.R., Schroeter E.H., Koerber A., Park S.W., Leach S.D., Wong R.O. Targeting of amacrine cell neurites to appropriate synaptic laminae in the developing zebrafish retina. Development 2005, 132:5069-5079.
106. Godinho L., Williams P.R., Claassen Y., Provost E., Leach S.D., Kamermans M., Wong R.O. Nonapical symmetric divisions underlie horizontal cell layer formation in the developing retina in vivo. Neuron 2007, 56:597-603.
107. Goldman D., Hankin M., Li Z., Dai X., Ding J. Transgenic zebrafish for studying nervous system development and regeneration. Transgenic Res. 2001, 10:21-33.
108. Golling G., Amsterdam A., Sun Z., Antonelli M., Maldonado E., Chen W., Burgess S., Haldi M., Artzt K., Farrington S., et al. Insertional mutagenesis in zebrafish rapidly identifies genes essential for early vertebrate development. Nat. Genet. 2002, 31:135-140.
109. Gonzalez-Quevedo R., Lee Y., Poss K.D., Wilkinson D.G. Neuronal regulation of the spatial patterning of neurogenesis. Dev. Cell 2010, 18:136-147.
110. Gothilf Y., Toyama R., Coon S., Du S., Dawid I., Klein D. Pineal-specific expression of green fluorescent protein under the control of the serotonin-N-acetyltransferase gene regulatory regions in transgenic zebrafish. Dev. Dyn. 2002, 225:241-249.
111. Grandel H., Kaslin J., Ganz J., Wenzel I., Brand M. Neural stem cells and neurogenesis in the adult zebrafish brain: Origin, proliferation dynamics, migration and cell fate. Dev. Biol. 2006, 295:263-277.
112. Gray M., Moens C.B., Amacher S.L., Eisen J.S., Beattie C.E. Zebrafish deadly seven functions in neurogenesis. Dev. Biol. 2001, 237:306-323.
113. Gregg R.G., Willer G.B., Fadool J.M., Dowling J.E., Link B.A. Positional cloning of the young mutation identifies an essential role for the Brahma chromatin remodeling complex in mediating retinal cell differentiation. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:6535-6540.
114. Gritsman K., Zhang J., Cheng S., Heckscher E., Talbot W.S., Schier A.F. The EGF-CFC protein one-eyed pinhead is essential for nodal signaling. Cell 1999, 97:121-132.
115. Guo S., Brush J., Teraoka H., Goddard A., Wilson S.W., Mullins M.C., Rosenthal A. Development of noradrenergic neurons in the zebrafish hindbrain requires BMP, FGF8, and the homeodomain protein soulless/Phox2a. Neuron 1999, 24:555-566.
116. Guo S., Wilson S.W., Cooke S., Chitnis A.B., Driever W., Rosenthal A. Mutations in the zebrafish unmask shared regulatory pathways controlling the development of catecholaminergic neurons. Dev. Biol. 1999, 208:473-487.
117. Guo S., Yamaguchi Y., Schilbach S., Wada T., Lee J., Goddard A., French D., Handa H., Rosenthal A. A regulator of transcriptional elongation controls vertebrate neuronal development. Nature 2000, 408:366-369.
118. Gwak J.W., Kong H.J., Bae Y.K., Kim M.J., Lee J., Park J.H., Yeo S.Y. Proliferating neural progenitors in the developing CNS of zebrafish require Jagged2 and Jagged1b. Mol. Cells 2010, 30:155-159.
119. Habuchi S., Ando R., Dedecker P., Verheijen W., Mizuno H., Miyawaki A., Hofkens J. Reversible single-molecule photoswitching in the GFP-like fluorescent protein Dronpa. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:9511-9516.
120. Haddon C., Smithers L., Schneider-Maunoury S., Coche T., Henrique D., Lewis J. Multiple delta genes and lateral inhibition in zebrafish primary neurogenesis. Development 1998, 125:359-370.
121. Halloran M.C., Sato-Maeda M., Warren J.T., Su F., Lele Z., Krone P.H., Kuwada J.Y., Shoji W. Laser-induced gene expression in specific cells of transgenic zebrafish. Development 2000, 127:1953-1960.
122. Hamaoka T., Takechi M., Chinen A., Nishiwaki Y., Kawamura S. Visualization of rod photoreceptor development using GFP-transgenic zebrafish. Genesis 2002, 34:215-220.
123. Hammond K.L., Hill R.E., Whitfield T.T., Currie P.D. Isolation of three zebrafish dachshund homologues and their expression in sensory organs, the central nervous system and pectoral fin buds. Mech. Dev. 2002, 112:183-189.
124. Hans S., Kaslin J., Freudenreich D., Brand M. Temporally-controlled site-specific recombination in zebrafish. PLoS One 2009, 4:e4640.
125. Hans S., Scheer N., Riedl I., v Weizsacker E., Blader P., Campos-Ortega J.A. her3, a zebrafish member of the hairy-E(spl) family, is repressed by Notch signalling. Development 2004, 131:2957-2969.
126. Hatta K. Role of the floor plate in axonal patterning in the zebrafish CNS. Neuron 1992, 9:629-642.
127. Hatta K., Tsujii H., Omura T. Cell tracking using a photoconvertible fluorescent protein. Nat. Protoc. 2006, 1:960-967.
128. Hauptmann G., Gerster T. Complex expression of the zp-50 pou gene in the embryonic zebrafish brain is altered by overexpression of sonic hedgehog. Development 1996, 122:1769-1780.
129. Hauptmann G., Gerster T. Combinatorial expression of zebrafish Brn-1- and Brn-2-related POU genes in the embryonic brain, pronephric primordium, and pharyngeal arches. Dev. Dyn. 2000, 218:345-358.
130. Hauptmann G., Gerster T. Multicolor whole-mount in situ hybridization. Methods Mol. Biol. 2000, 137:139-148.
131. Hauptmann G., Gerster T. Regulatory gene expression patterns reveal transverse and longitudinal subdivisions of the embryonic zebrafish forebrain. Mech. Dev. 2000, 91:105-118.
132. Hauptmann G., Soll I., Gerster T. The early embryonic zebrafish forebrain is subdivided into molecularly distinct transverse and longitudinal domains. Brain Res. Bull. 2002, 57:371-375.
133. Heisenberg C.P., Brand M., Jiang Y.J., Warga R.M., Beuchle D., van Eeden F.J., Furutani-Seiki M., Granato M., Haffter P., Hammerschmidt M., et al. Genes involved in forebrain development in the zebrafish, Danio rerio. Development 1996, 123:191-203.
134. Helde K.A., Wilson E.T., Cretekos C.J., Grunwald D.J. Contribution of early cells to the fate map of the zebrafish gastrula. Science 1994, 265:517-520.
135. Helmchen F., Denk W. Deep tissue two-photon microscopy. Nat. Methods 2005, 2:932-940.
136. Hernandez-Lagunas L., Choi I.F., Kaji T., Simpson P., Hershey C., Zhou Y., Zon L., Mercola M., Artinger K.B. Zebrafish narrowminded disrupts the transcription factor prdm1 and is required for neural crest and sensory neuron specification. Dev. Biol. 2005, 278:347-357.
137. Hesselson D., Anderson R.M., Beinat M., Stainier D.Y. Distinct populations of quiescent and proliferative pancreatic beta-cells identified by HOTcre mediated labeling. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:14896-14901.
138. Hieber V., Dai X., Foreman M., Goldman D. Induction of alpha1-tubulin gene expression during development and regeneration of the fish central nervous system. J. Neurobiol. 1998, 37:429-440.
139. Higashijima S., Okamoto H., Ueno N., Hotta Y., Eguchi G. High-frequency generation of transgenic zebrafish which reliably express GFP in whole muscles or the whole body by using promoters of zebrafish origin. Dev. Biol. 1997, 192:289-299.
140. Higashijima S., Hotta Y., Okamoto H. Visualization of cranial motor neurons in live transgenic zebrafish expressing green fluorescent protein under the control of the islet-1 promoter/enhancer. J. Neurosci. 2000, 20:206-218.
141. Higashijima S., Mandel G., Fetcho J.R. Distribution of prospective glutamatergic, glycinergic, and GABAergic neurons in embryonic and larval zebrafish. J. Comp. Neurol. 2004, 480:1-18.
142. Hild M., Dick A., Rauch G.J., Meier A., Bouwmeester T., Haffter P., Hammerschmidt M. The smad5 mutation somitabun blocks Bmp2b signaling during early dorsoventral patterning of the zebrafish embryo. Development 1999, 126:2149-2159.
143. Hjorth J.T., Gad J., Cooper H., Key B. A zebrafish homologue of deleted in colorectal cancer (zdcc) is expressed in the first neuronal clusters of the developing brain. Mech. Dev. 2001, 109:105-109.
144. Ho R.K., Kane D.A. Cell-autonomous action of zebrafish spt-1 mutation in specific mesodermal precursors. Nature 1990, 348:728-730.
145. Holley S.A., Geisler R., Nusslein-Volhard C. Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity. Genes Dev. 2000, 14:1678-1690.
146. Holzschuh J., Ryu S., Aberger F., Driever W. Dopamine transporter expression distinguishes dopaminergic neurons from other catecholaminergic neurons in the developing zebrafish embryo. Mech. Dev. 2001, 101:237-243.
147. Hong S., Kim C., Yoo K., Kim H., Kudoh T., Dawid I., Huh T. Isolation and expression of a novel neuron-specific onecut homeobox gene in zebrafish. Mech. Dev. 2002, 112:199-202.
148. Horne-Badovinac S., Lin D., Waldron S., Schwarz M., Mbamalu G., Pawson T., Jan Y., Stainier D.Y., Abdelilah-Seyfried S. Positional cloning of heart and soul reveals multiple roles for PKC lambda in zebrafish organogenesis. Curr. Biol. 2001, 11:1492-1502.
149. Houart C., Caneparo L., Heisenberg C., Barth K., Take-Uchi M., Wilson S. Establishment of the telencephalon during gastrulation by local antagonism of Wnt signaling. Neuron 2002, 35:255-265.
150. Huang S., Sato S. Progenitor cells in the adult zebrafish nervous system express a Brn-1-related Pou gene, Tai-ji. Mech. Dev. 1998, 71:23-35.
151. Imboden M., Devignot V., Korn H., Goblet C. Regional distribution of glycine receptor messenger RNA in the central nervous system of zebrafish. Neuroscience 2001, 103:811-830.
152. Inoue A., Takahashi M., Hatta K., Hotta Y., Okamoto H. Developmental regulation of islet-1 mRNA expression during neuronal differentiation in embryonic zebrafish. Dev. Dyn. 1994, 199:1-11.
153. Ito Y., Tanaka H., Okamoto H., Ohshima T. Characterization of neural stem cells and their progeny in the adult zebrafish optic tectum. Dev. Biol. 2010, 342:26-38.
154. Itoh M., Kim C.H., Palardy G., Oda T., Jiang Y.J., Maust D., Yeo S.Y., Lorick K., Wright G.J., Ariza-McNaughton L., et al. Mind bomb is a ubiquitin ligase that is essential for efficient activation of Notch signaling by Delta. Dev. Cell 2003, 4:67-82.
155. Jaszai J., Reifers F., Picker A., Langenberg T., Brand M. Isthmus-to-midbrain transformation in the absence of midbrain-hindbrain organizer activity. Development 2003, 130:6611-6623.
156. Jensen A.M., Westerfield M. Zebrafish mosaic eyes is a novel FERM protein required for retinal lamination and retinal pigmented epithelial tight junction formation. Curr. Biol. 2004, 14:711-717.
157. Jing X., Malicki J. Zebrafish ale oko, an essential determinant of sensory neuron survival and the polarity of retinal radial glia, encodes the p50 subunit of dynactin. Development 2009, 136:2955-2964.
158. Jowett T. Analysis of protein and gene expression. Methods Cell Biol. 1999, 59:63-85.
159. Julich D., Hwee Lim C., Round J., Nicolaije C., Schroeder J., Davies A., Geisler R., Lewis J., Jiang Y.J., Holley S.A. beamter/deltaC and the role of Notch ligands in the zebrafish somite segmentation, hindbrain neurogenesis and hypochord differentiation. Dev. Biol. 2005, 286:391-404.
160. Kalev-Zylinska M.L., Horsfield J.A., Flores M.V., Postlethwait J.H., Chau J.Y., Cattin P.M., Vitas M.R., Crosier P.S., Crosier K.E. Runx3 is required for hematopoietic development in zebrafish. Dev. Dyn. 2003, 228:323-336.
161. Kani S., Bae Y.K., Shimizu T., Tanabe K., Satou C., Parsons M.J., Scott E., Higashijima S., Hibi M. Proneural gene-linked neurogenesis in zebrafish cerebellum. Dev. Biol. 2010, 343:1-17.
162. Kaslin J., Ganz J., Brand M. Proliferation, neurogenesis and regeneration in the non-mammalian vertebrate brain. Philos. Trans. R. Soc. Lond., B, Biol. Sci. 2008, 363:101-122.
163. Kaslin J., Ganz J., Geffarth M., Grandel H., Hans S., Brand M. Stem cells in the adult zebrafish cerebellum: Initiation and maintenance of a novel stem cell niche. J. Neurosci. 2009, 29:6142-6153.
164. Kaslin J., Nystedt J.M., Ostergard M., Peitsaro N., Panula P. The orexin/hypocretin system in zebrafish is connected to the aminergic and cholinergic systems. J. Neurosci. 2004, 24:2678-2689.
165. Kaslin J., Panula P. Comparative anatomy of the histaminergic and other aminergic systems in zebrafish (Danio rerio). J. Comp. Neurol. 2001, 440:342-377.
166. Kassen S.C., Ramanan V., Montgomery J.E., Liu C.G., Vihtelic T.S., Hyde D.R. Time course analysis of gene expression during light-induced photoreceptor cell death and regeneration in albino zebrafish. Dev. Neurobiol. 2007, 67:1009-1031. C., T.B.
167. Kassen S.C., Thummel R., Burket C.T., Campochiaro L.A., Harding M.J., Hyde D.R. The Tg(ccnb1:EGFP) transgenic zebrafish line labels proliferating cells during retinal development and regeneration. Mol. Vis. 2008, 14:951-963.
168. Kawahara A., Chien C.B., Dawid I.B. The homeobox gene mbx is involved in eye and tectum development. Dev. Biol. 2002, 248:107-117.
169. Kawai H., Arata N., Nakayasu H. Three-dimensional distribution of astrocytes in zebrafish spinal cord. Glia 2001, 36:406-413.
170. Kay J., Finger-Baier K., Roeser T., Staub W., Baier H. Retinal ganglion cell genesis requires lakritz, a zebrafish atonal homolog. Neuron 2001, 30:725-736.
171. Kay J.N., Roeser T., Mumm J.S., Godinho L., Mrejeru A., Wong R.O., Baier H. Transient requirement for ganglion cells during assembly of retinal synaptic layers. Development 2004, 131:1331-1342.
172. Keller P.J., Schmidt A.D., Santella A., Khairy K., Bao Z., Wittbrodt J., Stelzer E.H. Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy. Nat. Methods 2010, 7:637-642.
173. Keller P.J., Schmidt A.D., Wittbrodt J., Stelzer E.H. Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy. Science 2008, 322:1065-1069.
174. Kemp H.A., Carmany-Rampey A., Moens C. Generating chimeric zebrafish embryos by transplantation. J. Vis. Exp. 2009, 17(29). pii: 1394. doi: 10.379/-1394.
175. Kennedy B.N., Alvarez Y., Brockerhoff S.E., Stearns G.W., Sapetto-Rebow B., Taylor M.R., Hurley J.B. Identification of a zebrafish cone photoreceptor-specific promoter and genetic rescue of achromatopsia in the nof mutant. Invest. Ophthalmol. Vis. Sci. 2007, 48:522-529.
176. Kera S.A., Agerwala S.M., Horne J.H. The temporal resolution of in vivo electroporation in zebrafish: A method for time-resolved loss of function. Zebrafish 2010, 7:97-108.
177. Kikuchi Y., Segawa H., Tokumoto M., Tsubokawa T., Hotta Y., Uyemura K., Okamoto H. Ocular and cerebellar defects in zebrafish induced by overexpression of the LIM domains of the islet-3 LIM/homeodomain protein. Neuron 1997, 18:369-382.
178. Kim C.H., Oda T., Itoh M., Jiang D., Artinger K.B., Chandrasekharappa S.C., Driever W., Chitnis A.B. Repressor activity of Headless/Tcf3 is essential for vertebrate head formation. Nature 2000, 407:913-916.
179. Kim C.H., Ueshima E., Muraoka O., Tanaka H., Yeo S.Y., Huh T.L., Miki N. Zebrafish elav/HuC homologue as a very early neuronal marker. Neurosci. Lett. 1996, 216:109-112.
180. Kim H., Shin J., Kim S., Poling J., Park H.C., Appel B. Notch-regulated oligodendrocyte specification from radial glia in the spinal cord of zebrafish embryos. Dev. Dyn. 2008, 237:2081-2089.
181. Kimmel C.B., Ballard W.W., Kimmel S.R., Ullmann B., Schilling T.F. Stages of embryonic development of the zebrafish. Dev. Dyn. 1995, 203:253-310.
182. Kimura Y., Okamura Y., Higashijima S. alx, a zebrafish homolog of Chx10, marks ipsilateral descending excitatory interneurons that participate in the regulation of spinal locomotor circuits. J. Neurosci. 2006, 26:5684-5697.
183. Kimura Y., Satou C., Higashijima S. V2a and V2b neurons are generated by the final divisions of pair-producing progenitors in the zebrafish spinal cord. Development 2008, 135:3001-3005.
184. Kirby B.B., Takada N., Latimer A.J., Shin J., Carney T.J., Kelsh R.N., Appel B. In vivo time-lapse imaging shows dynamic oligodendrocyte progenitor behavior during zebrafish development. Nat. Neurosci. 2006, 9:1506-1511.
185. Kishimoto Y., Lee K.H., Zon L., Hammerschmidt M., Schulte-Merker S. The molecular nature of zebrafish swirl: BMP2 function is essential during early dorsoventral patterning. Development 1997, 124:4457-4466.
186. Knowlton M.N., Li T., Ren Y., Bill B.R., Ellis L.B., Ekker S.C. A PATO-compliant zebrafish screening database (MODB): Management of morpholino knockdown screen information. BMC Bioinformatics 2008, 9:7.
187. Ko H.W., Norman R.X., Tran J., Fuller K.P., Fukuda M., Eggenschwiler J.T. Broad-minded links cell cycle-related kinase to cilia assembly and hedgehog signal transduction. Dev. Cell 2010, 18:237-247.
188. Korzh V., Edlund T., Thor S. Zebrafish primary neurons initiate expression of the LIM homeodomain protein Isl-1 at the end of gastrulation. Development 1993, 118:417-425.
189. Korzh V., Sleptsova I., Liao J., He J., Gong Z. Expression of zebrafish bHLH genes ngn1 and nrd defines distinct stages of neural differentiation. Dev. Dyn. 1998, 213:92-104.
190. Koshida S., Shinya M., Mizuno T., Kuroiwa A., Takeda H. Initial anteroposterior pattern of the zebrafish central nervous system is determined by differential competence of the epiblast. Development 1998, 125:1957-1966.
191. Koster R.W., Fraser S.E. Direct imaging of in vivo neuronal migration in the developing cerebellum. Curr. Biol. 2001, 11:1858-1863.
192. Kozlowski D.J., Weinberg E.S. Photoactivatable (caged) fluorescein as a cell tracer for fate mapping in the zebrafish embryo. Methods Mol. Biol. 2000, 135:349-355.
193. Kucenas S., Takada N., Park H.C., Woodruff E., Broadie K., Appel B. CNS-derived glia ensheath peripheral nerves and mediate motor root development. Nat. Neurosci. 2008, 11:143-151.
194. Kurita R., Sagara H., Aoki Y., Link B.A., Arai K., Watanabe S. Suppression of lens growth by alphaA-crystallin promoter-driven expression of diphtheria toxin results in disruption of retinal cell organization in zebrafish. Dev. Biol. 2003, 255:113-127.
195. Kusik B.W., Hammond D.R., Udvadia A.J. Transcriptional regulatory regions of gap43 needed in developing and regenerating retinal ganglion cells. Dev. Dyn. 2010, 239:482-495.
196. Lam C.S., Marz M., Strahle U. gfap and nestin reporter lines reveal characteristics of neural progenitors in the adult zebrafish brain. Dev. Dyn. 2009, 238:475-486.
197. Langenau D., Palomero T., Kanki J., Ferrando A., Zhou Y., Zon L., Look A. Molecular cloning and developmental expression of Tlx (Hox11) genes in zebrafish (Danio rerio). Mech. Dev. 2002, 117:243-248.
198. Latimer A.J., Shin J., Appel B. her9 promotes floor plate development in zebrafish. Dev. Dyn. 2005, 232:1098-1104.
199. Le X., Langenau D.M., Keefe M.D., Kutok J.L., Neuberg D.S., Zon L.I. Heat shock-inducible Cre/Lox approaches to induce diverse types of tumors and hyperplasia in transgenic zebrafish. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:9410-9415.
200. Leake D., Asch W., Canger A., Schechter N. Gefiltin in zebrafish embryos: Sequential gene expression of two neurofilament proteins in retinal ganglion cells. Differentiation 1999, 65:181-189.
201. Lee J.E., Wu S.F., Goering L.M., Dorsky R.I. Canonical Wnt signaling through Lef1 is required for hypothalamic neurogenesis. Development 2006, 133:4451-4461.
202. Lee V.M., Carden M.J., Schlaepfer W.W., Trojanowski J.Q. Monoclonal antibodies distinguish several differently phosphorylated states of the two largest rat neurofilament subunits (NF-H and NF-M) and demonstrate their existence in the normal nervous system of adult rats. J. Neurosci. 1987, 7:3474-3488.
203. Lee Y., Grill S., Sanchez A., Murphy-Ryan M., Poss K.D. Fgf signaling instructs position-dependent growth rate during zebrafish fin regeneration. Development 2005, 132:5173-5183.
204. Lele Z., Folchert A., Concha M., Rauch G.J., Geisler R., Rosa F., Wilson S.W., Hammerschmidt M., Bally-Cuif L. parachute/n-cadherin is required for morphogenesis and maintained integrity of the zebrafish neural tube. Development 2002, 129:3281-3294.
205. Levkowitz G., Zeller J., Sirotkin H.I., French D., Schilbach S., Hashimoto H., Hibi M., Talbot W.S., Rosenthal A. Zinc finger protein too few controls the development of monoaminergic neurons. Nat. Neurosci. 2003, 6:28-33.
206. Li M., Zhao C., Wang Y., Zhao Z., Meng A. Zebrafish sox9b is an early neural crest marker. Dev. Genes Evol. 2002, 212:203-206.
207. Li Y., Allende M.L., Finkelstein R., Weinberg E.S. Expression of two zebrafish orthodenticle-related genes in the embryonic brain. Mech. Dev. 1994, 48:229-244.
208. Li Z., Joseph N.M., Easter S.S. The morphogenesis of the zebrafish eye, including a fate map of the optic vesicle. Dev. Dyn. 2000, 218:175-188.
209. Li Z., Korzh V., Gong Z. DTA-mediated targeted ablation revealed differential interdependence of endocrine cell lineages in early development of zebrafish pancreas. Differentiation 2009, 78:241-252.
210. Liao J., He J., Yan T., Korzh V., Gong Z. A class of neuroD-related basic helix-loop-helix transcription factors expressed in developing central nervous system in zebrafish. DNA Cell Biol. 1999, 18:333-344.
211. Lillesaar C., Stigloher C., Tannhauser B., Wullimann M.F., Bally-Cuif L. Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish, Danio rerio, using transgenics to visualize raphe-specific pet1 expression. J. Comp. Neurol. 2009, 512:158-182.
212. Lillesaar C., Tannhauser B., Stigloher C., Kremmer E., Bally-Cuif L. The serotonergic phenotype is acquired by converging genetic mechanisms within the zebrafish central nervous system. Dev. Dyn. 2007, 236:1072-1084.
213. Link B., Fadool J., Malicki J., Dowling J. The zebrafish young mutation acts non-cell-autonomously to uncouple differentiation from specification for all retinal cells. Development 2000, 127:2177-2188.
214. Link B.A., Kainz P.M., Ryou T., Dowling J.E. The perplexed and confused mutations affect distinct stages during the transition from proliferating to post-mitotic cells within the zebrafish retina. Dev. Biol. 2001, 236:436-453.
215. Lippincott-Schwartz J., Patterson G.H. Photoactivatable fluorescent proteins for diffraction-limited and super-resolution imaging. Trends Cell Biol. 2009, 19:555-565.
216. Lister J.A., Robertson C.P., Lepage T., Johnson S.L., Raible D.W. nacre encodes a zebrafish microphthalmia-related protein that regulates neural-crest-derived pigment cell fate. Development 1999, 126:3757-3767.
217. Liu K.S., Gray M., Otto S.J., Fetcho J.R., Beattie C.E. Mutations in deadly seven/notch1a reveal developmental plasticity in the escape response circuit. J. Neurosci. 2003, 23:8159-8166.
218. Luo G.R., Chen Y., Li X.P., Liu T.X., Le W.D. Nr4a2 is essential for the differentiation of dopaminergic neurons during zebrafish embryogenesis. Mol. Cell. Neurosci. 2008, 39:202-210.
219. Lyons D.A., Guy A.T., Clarke J.D. Monitoring neural progenitor fate through multiple rounds of division in an intact vertebrate brain. Development 2003, 130:3427-3436.
220. MacDonald R.B., Debiais-Thibaud M., Talbot J.C., Ekker M. The relationship between dlx and gad1 expression indicates highly conserved genetic pathways in the zebrafish forebrain. Dev. Dyn. 2010, 239:2298-2306.
221. Mahler J., Driever W. Expression of the zebrafish intermediate neurofilament Nestin in the developing nervous system and in neural proliferation zones at postembryonic stages. BMC Dev. Biol. 2007, 7:89.
222. Malicki J., Driever W. oko meduzy mutations affect neuronal patterning in the zebrafish retina and reveal cell-cell interactions of the retinal neuroepithelial sheet. Development 1999, 126:1235-1246.
223. Malicki J., Jo H., Pujic Z. Zebrafish N-cadherin, encoded by the glass onion locus, plays an essential role in retinal patterning. Dev. Biol. 2003, 259:95-108.
224. Marc R., Cameron D. A molecular phenotype atlas of the zebrafish retina. J. Neurocytol. 2001, 30:593-654.
225. Marques S.R., Lee Y., Poss K.D., Yelon D. Reiterative roles for FGF signaling in the establishment of size and proportion of the zebrafish heart. Dev. Biol. 2008, 321:397-406.
226. Martin S., Heinrich G., Sandell J.H. Sequence and expression of glutamic acid decarboxylase isoforms in the developing zebrafish. J. Comp. Neurol. 1998, 396:253-266.
227. Marx M., Rutishauser U., Bastmeyer M. Dual function of polysialic acid during zebrafish central nervous system development. Development 2001, 128:4949-4958.
228. März M., Chapouton P., Diotel N., Vaillant C., Hesl B., Takamiya M., Lam C.S., Kah O., Bally-Cuif L., Strahle U. Heterogeneity in progenitor cell subtypes in the ventricular zone of the zebrafish adult telencephalon. Glia 2010, 58:870-888.
229. Masai I., Heisenberg C.P., Barth K.A., Macdonald R., Adamek S., Wilson S.W. floating head and masterblind regulate neuronal patterning in the roof of the forebrain. Neuron 1997, 18:43-57.
230. Masai I., Stemple D., Okamoto H., Wilson S. Midline signals regulate retinal neurogenesis in zebrafish. Neuron 2000, 27:251-263.
231. Matsuda M., Chitnis A.B. Interaction with Notch determines endocytosis of specific Delta ligands in zebrafish neural tissue. Development 2009, 136:197-206.
232. Maves L., Jackman W., Kimmel C.B. FGF3 and FGF8 mediate a rhombomere 4 signaling activity in the zebrafish hindbrain. Development 2002, 129:3825-3837.
233. McFarland K.A., Topczewska J.M., Weidinger G., Dorsky R.I., Appel B. Hh and Wnt signaling regulate formation of olig2+ neurons in the zebrafish cerebellum. Dev. Biol. 2008, 318:162-171.
234. McGraw H.F., Nechiporuk A., Raible D.W. Zebrafish dorsal root ganglia neural precursor cells adopt a glial fate in the absence of neurogenin1. J. Neurosci. 2008, 28:12558-12569.
235. McLean D.L., Fan J., Higashijima S., Hale M.E., Fetcho J.R. A topographic map of recruitment in spinal cord. Nature 2007, 446:71-75.
236. McMahon C., Gestri G., Wilson S.W., Link B.A. Lmx1b is essential for survival of periocular mesenchymal cells and influences Fgf-mediated retinal patterning in zebrafish. Dev. Biol. 2009, 332:287-298.
237. Melancon E., Liu D.W., Westerfield M., Eisen J.S. Pathfinding by identified zebrafish motoneurons in the absence of muscle pioneers. J. Neurosci. 1997, 17:7796-7804.
238. Meng S., Ryu S., Zhao B., Zhang D.Q., Driever W., McMahon D.G. Targeting retinal dopaminergic neurons in tyrosine hydroxylase-driven green fluorescent protein transgenic zebrafish. Mol. Vis. 2008, 14:2475-2483.
239. Meng X., Noyes M.B., Zhu L.J., Lawson N.D., Wolfe S.A. Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases. Nat. Biotechnol. 2008, 26:695-701.
240. Menuet A., Pellegrini E., Brion F., Gueguen M.M., Anglade I., Pakdel F., Kah O. Expression and estrogen-dependent regulation of the zebrafish brain aromatase gene. J. Comp. Neurol. 2005, 485:304-320.
241. Metcalfe W., Myers P., Trevarrow B., Bass M., Kimmel C. Primary neurons that express the L2/HNK-1 carbohydrate during early development in the zebrafish. Development 1990, 110:491-504.
242. Mikkola I., Fjose A., Kuwada J.Y., Wilson S., Guddal P.H., Krauss S. The paired domain-containing nuclear factor pax[b] is expressed in specific commissural interneurons in zebrafish embryos. J. Neurobiol. 1992, 23:933-946.
243. Mione M., Baldessari D., Deflorian G., Nappo G., Santoriello C. How neuronal migration contributes to the morphogenesis of the CNS: Insights from the zebrafish. Dev. Neurosci. 2008, 30:65-81.
244. Miyamura Y., Nakayasu H. Zonal distribution of Purkinje cells in the zebrafish cerebellum: Analysis by means of a specific monoclonal antibody. Cell Tissue Res. 2001, 305:299-305.
245. Moens C.B., Donn T.M., Wolf-Saxon E.R., Ma T.P. Reverse genetics in zebrafish by TILLING. Brief Funct. Genomic Proteomic 2008, 7:454-459.
246. Molina G.A., Watkins S.C., Tsang M. Generation of FGF reporter transgenic zebrafish and their utility in chemical screens. BMC Dev. Biol. 2007, 7:62.
247. Montgomery J.E., Parsons M.J., Hyde D.R. A novel model of retinal ablation demonstrates that the extent of rod cell death regulates the origin of the regenerated zebrafish rod photoreceptors. J. Comp. Neurol. 2009, 518:800-814.
248. Mueller T., Wullimann M.F. BrdU-, neuroD (nrd)- and Hu-studies reveal unusual non-ventricular neurogenesis in the postembryonic zebrafish forebrain. Mech. Dev. 2002, 117:123-135.
249. Mueller T., Wullimann M.F. Anatomy of neurogenesis in the early zebrafish brain. Brain Res. Dev. Brain Res. 2003, 140:137-155.
250. Mumm J.S., Williams P.R., Godinho L., Koerber A., Pittman A.J., Roeser T., Chien C.B., Baier H., Wong R.O. In vivo imaging reveals dendritic targeting of laminated afferents by zebrafish retinal ganglion cells. Neuron 2006, 52:609-621.
251. Nguyen V.H., Schmid B., Trout J., Connors S.A., Ekker M., Mullins M.C. Ventral and lateral regions of the zebrafish gastrula, including the neural crest progenitors, are established by a bmp2b/swirl pathway of genes. Dev. Biol. 1998, 199:93-110.
252. Ninkovic J., Stigloher C., Lillesaar C., Bally-Cuif L. Gsk3beta/PKA and Gli1 regulate the maintenance of neural progenitors at the midbrain-hindbrain boundary in concert with E(Spl) factor activity. Development 2008, 135:3137-3148.
253. Ninkovic J., Tallafuss A., Leucht C., Topczewski J., Tannhauser B., Solnica-Krezel L., Bally-Cuif L. Inhibition of neurogenesis at the zebrafish midbrain-hindbrain boundary by the combined and dose-dependent activity of a new hairy/E(spl) gene pair. Development 2005, 132:75-88.
254. Nissen R.M., Yan J., Amsterdam A., Hopkins N., Burgess S.M. Zebrafish foxi one modulates cellular responses to Fgf signaling required for the integrity of ear and jaw patterning. Development 2003, 130:2543-2554.
255. Norden C., Young S., Link B.A., Harris W.A. Actomyosin is the main driver of interkinetic nuclear migration in the retina. Cell 2009, 138:1195-1208.
256. Norton W.H., Folchert A., Bally-Cuif L. Comparative analysis of serotonin receptor (HTR1A/HTR1B families) and transporter (slc6a4a/b) gene expression in the zebrafish brain. J. Comp. Neurol. 2008, 511:521-542.
257. O'Malley D.M., Kao Y.H., Fetcho J.R. Imaging the functional organization of zebrafish hindbrain segments during escape behaviors. Neuron 1996, 17:1145-1155.
258. Odenthal J., Nusslein-Volhard C. Fork head domain genes in zebrafish. Dev. Genes Evol. 1998, 208:245-258.
259. Odenthal J., van Eeden F.J., Haffter P., Ingham P.W., Nusslein-Volhard C. Two distinct cell populations in the floor plate of the zebrafish are induced by different pathways. Dev. Biol. 2000, 219:350-363.
260. Oehlmann V., Berger S., Sterner C., Korsching S. Zebrafish beta tubulin expression is limited to the nervous system throughout development, and in the adult brain is restricted to a subset of proliferative regions. Gene Expr. Patterns 2004, 4:191-198.
261. Ogura E., Okuda Y., Kondoh H., Kamachi Y. Adaptation of GAL4 activators for GAL4 enhancer trapping in zebrafish. Dev. Dyn. 2009, 238:641-655.
262. Okuda Y., Ogura E., Kondoh H., Kamachi Y. B1 SOX coordinate cell specification with patterning and morphogenesis in the early zebrafish embryo. PLoS Genet. 2010, 6:e1000936.
263. Okuda Y., Yoda H., Uchikawa M., Furutani-Seiki M., Takeda H., Kondoh H., Kamachi Y. Comparative genomic and expression analysis of group B1 sox genes in zebrafish indicates their diversification during vertebrate evolution. Dev. Dyn. 2006, 235:811-825.
264. Olivier N., Luengo-Oroz M.A., Duloquin L., Faure E., Savy T., Veilleux I., Solinas X., Debarre D., Bourgine P., Santos A., et al. Cell lineage reconstruction of early zebrafish embryos using label-free nonlinear microscopy. Science 2010, 329:967-971.
265. Omori Y., Malicki J. oko meduzy and related crumbs genes are determinants of apical cell features in the vertebrate embryo. Curr. Biol. 2006, 16:945-957.
266. Onichtchouk D., Geier F., Polok B., Messerschmidt D.M., Mossner R., Wendik B., Song S., Taylor V., Timmer J., Driever W. Zebrafish Pou5f1-dependent transcriptional networks in temporal control of early development. Mol. Syst. Biol. 2010, 6:354.
267. Ott H., Diekmann H., Stuermer C., Bastmeyer M. Function of neurolin (DM-GRASP/SC-1) in guidance of motor axons during zebrafish development. Dev. Biol. 2001, 235:86-97.
268. Palevitch O., Kight K., Abraham E., Wray S., Zohar Y., Gothilf Y. Ontogeny of the GnRH systems in zebrafish brain: In situ hybridization and promoter-reporter expression analyses in intact animals. Cell Tissue Res. 2007, 327:313-322.
269. Papan C., Campos-Ortega J. A clonal analysis of spinal cord development in the zebrafish. Dev. Genes Evol. 1997, 207:71-81.
270. Papan C., Campos-ortega J.A. On the formation of the neural keel and neural tube in the zebrafish Danio (Brachydanio) rerio. Rouxs Arch. Dev. Biol. 1994, 203:178-186.
271. Parinov S., Kondrichin I., Korzh V., Emelyanov A. Tol2 transposon-mediated enhancer trap to identify developmentally regulated zebrafish genes in vivo. Dev. Dyn. 2004, 231:449-459.
272. Park H.C., Hong S.K., Kim H.S., Kim S.H., Yoon E.J., Kim C.H., Miki N., Huh T.L. Structural comparison of zebrafish Elav/Hu and their differential expressions during neurogenesis. Neurosci. Lett. 2000, 279:81-84.
273. Park H.C., Boyce J., Shin J., Appel B. Oligodendrocyte specification in zebrafish requires notch-regulated cyclin-dependent kinase inhibitor function. J. Neurosci. 2005, 25:6836-6844.
274. Park H.C., Kim C.H., Bae Y.K., Yeo S.Y., Kim S.H., Hong S.K., Shin J., Yoo K.W., Hibi M., Hirano T., et al. Analysis of upstream elements in the HuC promoter leads to the establishment of transgenic zebrafish with fluorescent neurons. Dev. Biol. 2000, 227:279-293.
275. Park H.C., Mehta A., Richardson J.S., Appel B. olig2 is required for zebrafish primary motor neuron and oligodendrocyte development. Dev. Biol. 2002, 248:356-368.
276. Park H.C., Shin J., Appel B. Spatial and temporal regulation of ventral spinal cord precursor specification by Hedgehog signaling. Development 2004, 131:5959-5969.
277. Park S.H., Yeo S.Y., Yoo K.W., Hong S.K., Lee S., Rhee M., Chitnis A.B., Kim C.H. Zath3, a neural basic helix-loop-helix gene, regulates early neurogenesis in the zebrafish. Biochem. Biophys. Res. Commun. 2003, 308:184-190.
278. Parsons M.J., Pisharath H., Yusuff S., Moore J.C., Siekmann A.F., Lawson N., Leach S.D. Notch-responsive cells initiate the secondary transition in larval zebrafish pancreas. Mech. Dev. 2009, 126:898-912.
279. Pauls S., Geldmacher-Voss B., Campos-Ortega J.A. A zebrafish histone variant H2A.F/Z and a transgenic H2A.F/Z:GFP fusion protein for in vivo studies of embryonic development. Dev. Genes Evol. 2001, 211:603-610.
280. Pellegrini E., Mouriec K., Anglade I., Menuet A., Le Page Y., Gueguen M.M., Marmignon M.H., Brion F., Pakdel F., Kah O. Identification of aromatase-positive radial glial cells as progenitor cells in the ventricular layer of the forebrain in zebrafish. J. Comp. Neurol. 2007, 501:150-167.
281. Picker A., Scholpp S., Bohli H., Takeda H., Brand M. A novel positive transcriptional feedback loop in midbrain-hindbrain boundary development is revealed through analysis of the zebrafish pax2.1 promoter in transgenic lines. Development 2002, 129:3227-3239.
282. Pisharath H., Parsons M.J. Nitroreductase-mediated cell ablation in transgenic zebrafish embryos. Methods Mol. Biol. 2009, 546:133-143.
283. Pisharath H., Rhee J.M., Swanson M.A., Leach S.D., Parsons M.J. Targeted ablation of beta cells in the embryonic zebrafish pancreas using E. coli nitroreductase. Mech. Dev. 2007, 124:218-229.
284. Pittman A.J., Law M.Y., Chien C.B. Pathfinding in a large vertebrate axon tract: Isotypic interactions guide retinotectal axons at multiple choice points. Development 2008, 135:2865-2871.
285. Poggi L., Vitorino M., Masai I., Harris W.A. Influences on neural lineage and mode of division in the zebrafish retina in vivo. J. Cell Biol. 2005, 171:991-999.
286. Prince V.E., Moens C.B., Kimmel C.B., Ho R.K. Zebrafish hox genes: Expression in the hindbrain region of wild-type and mutants of the segmentation gene, valentino. Development 1998, 125:393-406.
287. Quint E., Zerucha T., Ekker M. Differential expression of orthologous Dlx genes in zebrafish and mice: Implications for the evolution of the Dlx homeobox gene family. J. Exp. Zool. 2000, 288:235-241.
288. Raible F., Brand M. Divide et Impera-the midbrain-hindbrain boundary and its organizer. Trends Neurosci. 2004, 27:727-734.
289. Raymond P.A., Barthel L.K., Bernardos R.L., Perkowski J.J. Molecular characterization of retinal stem cells and their niches in adult zebrafish. BMC Dev. Biol. 2006, 6:36.
290. Reifers F., Bohli H., Walsh E.C., Crossley P.H., Stainier D.Y., Brand M. Fgf8 is mutated in zebrafish acerebellar (ace) mutants and is required for maintenance of midbrain-hindbrain boundary development and somitogenesis. Development 1998, 125:2381-2395.
291. Reim G., Brand M. Maternal control of vertebrate dorsoventral axis formation and epiboly by the POU domain protein Spg/Pou2/Oct4. Development 2006, 133:2757-2770.
292. Reimer M.M., Kuscha V., Wyatt C., Sorensen I., Frank R.E., Knuwer M., Becker T., Becker C.G. Sonic hedgehog is a polarized signal for motor neuron regeneration in adult zebrafish. J. Neurosci. 2009, 29:15073-15082.
293. Reimer M.M., Sorensen I., Kuscha V., Frank R.E., Liu C., Becker C.G., Becker T. Motor neuron regeneration in adult zebrafish. J. Neurosci. 2008, 28:8510-8516.
294. Reinhard E., Nedivi E., Wegner J., Skene J.H., Westerfield M. Neural selective activation and temporal regulation of a mammalian GAP-43 promoter in zebrafish. Development 1994, 120:1767-1775.
295. Reischauer S., Levesque M.P., Nusslein-Volhard C., Sonawane M. Lgl2 executes its function as a tumor suppressor by regulating ErbB signaling in the zebrafish epidermis. PLoS Genet. 2009, 5:e1000720.
296. Ren J.Q., McCarthy W.R., Zhang H., Adolph A.R., Li L. Behavioral visual responses of wild-type and hypopigmented zebrafish. Vision Res. 2002, 42:293-299.
297. Reugels A.M., Boggetti B., Scheer N., Campos-Ortega J.A. Asymmetric localization of Numb:EGFP in dividing neuroepithelial cells during neurulation in Danio rerio. Dev. Dyn. 2006, 235:934-948.
298. Ribes V., Balaskas N., Sasai N., Cruz C., Dessaud E., Cayuso J., Tozer S., Yang L.L., Novitch B., Marti E., et al. Distinct Sonic Hedgehog signaling dynamics specify floor plate and ventral neuronal progenitors in the vertebrate neural tube. Genes Dev. 2010, 24:1186-1200.
299. Rimini R., Beltrame M., Argenton F., Szymczak D., Cotelli F., Bianchi M.E. Expression patterns of zebrafish sox11A, sox11B and sox21. Mech. Dev. 1999, 89:167-171.
300. Rizzo M.A., Davidson M.W., Piston D.W. Fluorescent protein tracking and detection: Applications using fluorescent proteins in living cells 2009, Cold Spring Harb. Protoc. 2009, pdb top64.
301. Roberts R.K., Appel B. Apical polarity protein PrkCi is necessary for maintenance of spinal cord precursors in zebrafish. Dev. Dyn. 2009, 238:1638-1648.
302. Rohr S., Bit-Avragim N., Abdelilah-Seyfried S. Heart and soul/PRKCi and nagie oko/Mpp5 regulate myocardial coherence and remodeling during cardiac morphogenesis. Development 2006, 133:107-115.
303. Roth L., Bormann P., Bonnet A., Reinhard E. beta-thymosin is required for axonal tract formation in developing zebrafish brain. Development 1999, 126:1365-1374.
304. Russek-Blum N., Gutnick A., Nabel-Rosen H., Blechman J., Staudt N., Dorsky R.I., Houart C., Levkowitz G. Dopaminergic neuronal cluster size is determined during early forebrain patterning. Development 2008, 135:3401-3413.
305. Russek-Blum N., Nabel-Rosen H., Levkowitz G. High resolution fate map of the zebrafish diencephalon. Dev. Dyn. 2009, 238:1827-1835.
306. Ryu S., Holzschuh J., Erhardt S., Ettl A.K., Driever W. Depletion of minichromosome maintenance protein 5 in the zebrafish retina causes cell cycle defect and apoptosis. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:18467-18472.
307. Ryu S., Mahler J., Acampora D., Holzschuh J., Erhardt S., Omodei D., Simeone A., Driever W. Orthopedia homeodomain protein is essential for diencephalic dopaminergic neuron development. Curr. Biol. 2007, 17:873-880.
308. Sagasti A., Guido M.R., Raible D.W., Schier A.F. Repulsive interactions shape the morphologies and functional arrangement of zebrafish peripheral sensory arbors. Curr. Biol. 2005, 15:804-814.
309. Sassa T., Aizawa H., Okamoto H. Visualization of two distinct classes of neurons by gad2 and zic1 promoter/enhancer elements in the dorsal hindbrain of developing zebrafish reveals neuronal connectivity related to the auditory and lateral line systems. Dev. Dyn. 2007, 236:706-718.
310. Sato T., Hamaoka T., Aizawa H., Hosoya T., Okamoto H. Genetic single-cell mosaic analysis implicates ephrinB2 reverse signaling in projections from the posterior tectum to the hindbrain in zebrafish. J. Neurosci. 2007, 27:5271-5279.
311. Sato T., Takahoko M., Okamoto H. HuC:Kaede, a useful tool to label neural morphologies in networks in vivo. Genesis 2006, 44:136-142.
312. Sato Y., Miyasaka N., Yoshihara Y. Mutually exclusive glomerular innervation by two distinct types of olfactory sensory neurons revealed in transgenic zebrafish. J. Neurosci. 2005, 25:4889-4897.
313. Sato Y., Miyasaka N., Yoshihara Y. Hierarchical regulation of odorant receptor gene choice and subsequent axonal projection of olfactory sensory neurons in zebrafish. J. Neurosci. 2007, 27:1606-1615.
314. Sato-Maeda M., Obinata M., Shoji W. Position fine-tuning of caudal primary motoneurons in the zebrafish spinal cord. Development 2008, 135:323-332.
315. Schauerte H.E., van Eeden F.J., Fricke C., Odenthal J., Strahle U., Haffter P. Sonic hedgehog is not required for the induction of medial floor plate cells in the zebrafish. Development 1998, 125:2983-2993.
316. Schebesta M., Serluca F.C. olig1 Expression identifies developing oligodendrocytes in zebrafish and requires hedgehog and notch signaling. Dev. Dyn. 2009, 238:887-898.
317. Scheer N., Campos-Ortega J.A. Use of the Gal4-UAS technique for targeted gene expression in the zebrafish. Mech. Dev. 1999, 80:153-158.
318. Scheer N., Groth A., Hans S., Campos-Ortega J.A. An instructive function for Notch in promoting gliogenesis in the zebrafish retina. Development 2001, 128:1099-1107.
319. Schmitz B., Papan C., Campos-Ortega J.A. Neurulation in the anterior trunk region of the zebrafish Brachydanio rerio. Rouxs Arch. Dev. Biol. 1993, 202:250-259.
320. Scholpp S., Delogu A., Gilthorpe J., Peukert D., Schindler S., Lumsden A. Her6 regulates the neurogenetic gradient and neuronal identity in the thalamus. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:19895-19900.
321. Scholpp S., Wolf O., Brand M., Lumsden A. Hedgehog signalling from the zona limitans intrathalamica orchestrates patterning of the zebrafish diencephalon. Development 2006, 133:855-864.
322. Schonig K., Bujard H. Generating conditional mouse mutants via tetracycline-controlled gene expression. Methods Mol. Biol. 2003, 209:69-104.
323. Schroeter E.H., Wong R.O., Gregg R.G. In vivo development of retinal ON-bipolar cell axonal terminals visualized in nyx::MYFP transgenic zebrafish. Vis. Neurosci. 2006, 23:833-843.
324. Schulte-Merker S., Lee K.J., McMahon A.P., Hammerschmidt M. The zebrafish organizer requires chordino. Nature 1997, 387:862-863.
325. Scott E.K., Baier H. The cellular architecture of the larval zebrafish tectum, as revealed by gal4 enhancer trap lines. Front Neural Circuits 2009, 3:13.
326. Scott E.K., Mason L., Arrenberg A.B., Ziv L., Gosse N.J., Xiao T., Chi N.C., Asakawa K., Kawakami K., Baier H. Targeting neural circuitry in zebrafish using GAL4 enhancer trapping. Nat. Methods 2007, 4:323-326.
327. Segawa H., Miyashita T., Hirate Y., Higashijima S., Chino N., Uyemura K., Kikuchi Y., Okamoto H. Functional repression of Islet-2 by disruption of complex with Ldb impairs peripheral axonal outgrowth in embryonic zebrafish. Neuron 2001, 30:423-436.
328. Seok S.H., Na Y.R., Han J.H., Kim T.H., Jung H., Lee B.H., Emelyanov A., Parinov S., Park J.H. Cre/loxP-regulated transgenic zebrafish model for neural progenitor-specific oncogenic Kras expression. Cancer Sci. 2009, 101:149-154.
329. Shaner N.C., Lin M.Z., McKeown M.R., Steinbach P.A., Hazelwood K.L., Davidson M.W., Tsien R.Y. Improving the photostability of bright monomeric orange and red fluorescent proteins. Nat. Methods 2008, 5:545-551.
330. Shaner N.C., Steinbach P.A., Tsien R.Y. A guide to choosing fluorescent proteins. Nat. Methods 2005, 2:905-909.
331. Shin J., Park H.C., Topczewska J.M., Mawdsley D.J., Appel B. Neural cell fate analysis in zebrafish using olig2 BAC transgenics. Methods Cell Sci. 2003, 25:7-14.
332. Sinha D.K., Neveu P., Gagey N., Aujard I., Le Saux T., Rampon C., Gauron C., Kawakami K., Leucht C., Bally-Cuif L., et al. Photoactivation of the CreER T2 recombinase for conditional site-specific recombination with high spatiotemporal resolution. Zebrafish 2010, 7:199-204.
333. Solomon K.S., Fritz A. Concerted action of two dlx paralogs in sensory placode formation. Development 2002, 129:3127-3136.
334. Solomon K.S., Kudoh T., Dawid I.B., Fritz A. Zebrafish foxi1 mediates otic placode formation and jaw development. Development 2003, 130:929-940.
335. Son O., Kim H., Ji M., Yoo K., Rhee M., Kim C. Cloning and expression analysis of a Parkinson's disease gene, uch-L1, and its promoter in zebrafish. Biochem. Biophys. Res. Commun. 2003, 312:601-607.
336. Sonawane M., Carpio Y., Geisler R., Schwarz H., Maischein H.M., Nuesslein-Volhard C. Zebrafish penner/lethal giant larvae 2 functions in hemidesmosome formation, maintenance of cellular morphology and growth regulation in the developing basal epidermis. Development 2005, 132:3255-3265.
337. Song M.H., Brown N.L., Kuwada J.Y. The cfy mutation disrupts cell divisions in a stage-dependent manner in zebrafish embryos. Dev. Biol. 2004, 276:194-206.
338. Springer C.J., Niculescu-Duvaz I. Prodrug-activating systems in suicide gene therapy. J. Clin. Invest. 2000, 105:1161-1167.
339. Stigloher C., Chapouton P., Adolf B., Bally-Cuif L. Identification of neural progenitor pools by E(Spl) factors in the embryonic and adult brain. Brain Res. Bull. 2008, 75:266-273.
340. Stigloher C., Ninkovic J., Laplante M., Geling A., Tannhauser B., Topp S., Kikuta H., Becker T.S., Houart C., Bally-Cuif L. Segregation of telencephalic and eye-field identities inside the zebrafish forebrain territory is controlled by Rx3. Development 2006, 133:2925-2935.
341. Strahle U., Lam C.S., Ertzer R., Rastegar S. Vertebrate floor-plate specification: Variations on common themes. Trends Genet. 2004, 20:155-162.
342. Sugiyama M., Sakaue-Sawano A., Iimura T., Fukami K., Kitaguchi T., Kawakami K., Okamoto H., Higashijima S.I., Miyawaki A. Illuminating cell cycle progression in the developing zebrafish embryo. Proc. Natl. Acad. Sci. U.S.A. 2009, 106:20812-20817.
343. Szabo T.M., Brookings T., Preuss T., Faber D.S. Effects of temperature acclimation on a central neural circuit and its behavioral output. J. Neurophysiol. 2008, 100:2997-3008.
344. Takechi M., Hamaoka T., Kawamura S. Fluorescence visualization of ultraviolet-sensitive cone photoreceptor development in living zebrafish. FEBS Lett. 2003, 553:90-94.
345. Takke C., Dornseifer P., v Weizsacker E., Campos-Ortega J.A. her4, a zebrafish homologue of the Drosophila neurogenic gene E(spl), is a target of NOTCH signalling. Development 1999, 126:1811-1821.
346. Tallafuss A., Bally-Cuif L. Tracing of her5 progeny in zebrafish transgenics reveals the dynamics of midbrain-hindbrain neurogenesis and maintenance. Development 2003, 130:4307-4323.
347. Tallafuss A., Trepman A., Eisen J.S. DeltaA mRNA and protein distribution in the zebrafish nervous system. Dev. Dyn. 2009, 238:3226-3236.
348. Tarnowka M.A., Baglioni C., Basilico C. Synthesis of H1 histones by BHK cells in G1. Cell 1978, 15:163-171.
349. Tawk M., Araya C., Lyons D.A., Reugels A.M., Girdler G.C., Bayley P.R., Hyde D.R., Tada M., Clarke J.D. A mirror-symmetric cell division that orchestrates neuroepithelial morphogenesis. Nature 2007, 446:797-800.
350. Tawk M., Bianco I.H., Clarke J.D. Focal electroporation in zebrafish embryos and larvae. Methods Mol. Biol. 2009, 546:145-151.
351. Teraoka H., Russell C., Regan J., Chandrasekhar A., Concha M., Yokoyama R., Higashi K., Take-Uchi M., Dong W., Hiraga T., et al. Hedgehog and Fgf signaling pathways regulate the development of tphR-expressing serotonergic raphe neurons in zebrafish embryos. J. Neurobiol. 2004, 60:275-288.
352. Thisse, B., Pflumio, S., Fürthauer, M., Loppin, B., Heyer, V., Degrave, A., Woehl, R., Lux, A., Steffan, T., Charbonnier, X. Q., and Thisse, C.. (2001) Expression of the zebrafish genome during embryogenesis. ZFIN Direct Data Submission (). http://zfin.org.
353. Thisse C., Thisse B., Postlethwait J.H. Expression of snail2, a second member of the zebrafish snail family, in cephalic mesendoderm and presumptive neural crest of wild-type and spadetail mutant embryos. Dev. Biol. 1995, 172:86-99.
354. Thummel R., Burket C.T., Brewer J.L., Sarras M.P., Li L., Perry M., McDermott J.P., Sauer B., Hyde D.R., Godwin A.R. Cre-mediated site-specific recombination in zebrafish embryos. Dev. Dyn. 2005, 233:1366-1377.
355. Thummel R., Enright J.M., Kassen S.C., Montgomery J.E., Bailey T.J., Hyde D.R. Pax6a and Pax6b are required at different points in neuronal progenitor cell proliferation during zebrafish photoreceptor regeneration. Exp. Eye Res. 2010, 90:572-582.
356. Thummel R., Kassen S.C., Enright J.M., Nelson C.M., Montgomery J.E., Hyde D.R. Characterization of Muller glia and neuronal progenitors during adult zebrafish retinal regeneration. Exp. Eye Res. 2008, 87:433-444.
357. Thummel R., Kassen S.C., Enright J.M., Nelson C.M., Montgomery J.E., Hyde D.R. Characterization of Muller glia and neuronal progenitors during adult zebrafish retinal regeneration. Exp. Eye Res. 2008, 87:433-444. Epub 2008 Aug 5.
358. Thummel R., Kassen S.C., Montgomery J.E., Enright J.M., Hyde D.R. Inhibition of Muller glial cell division blocks regeneration of the light-damaged zebrafish retina. Dev. Neurobiol. 2008, 68:392-408.
359. Tong S.K., Mouriec K., Kuo M.W., Pellegrini E., Gueguen M.M., Brion F., Kah O., Chung B.C. A cyp19a1b-gfp (aromatase B) transgenic zebrafish line that expresses GFP in radial glial cells. Genesis 2009, 47:67-73.
360. Trewarrow B., Marks D., Kimmel C.B. Organization of hindbrain segments in the zebrafish embryos. Neuron 1990, 4:669-679.
361. Tsujimura T., Chinen A., Kawamura S. Identification of a locus control region for quadruplicated green-sensitive opsin genes in zebrafish. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:12813-12818.
362. Vanderlaan G., Tyurina O.V., Karlstrom R.O., Chandrasekhar A. Gli function is essential for motor neuron induction in zebrafish. Dev. Biol. 2005, 282:550-570.
363. Vitorino M., Jusuf P.R., Maurus D., Kimura Y., Higashijima S., Harris W.A. Vsx2 in the zebrafish retina: Restricted lineages through derepression. Neural Dev. 2009, 4:14.
364. von Trotha J.W., Campos-Ortega J.A., Reugels A.M. Apical localization of ASIP/PAR-3:EGFP in zebrafish neuroepithelial cells involves the oligomerization domain CR1, the PDZ domains, and the C-terminal portion of the protein. Dev. Dyn. 2006, 235:967-977.
365. Vriz S., Joly C., Boulekbache H., Condamine H. Zygotic expression of the zebrafish Sox-19, an HMG box-containing gene, suggests an involvement in central nervous system development. Brain Res. Mol. Brain Res. 1996, 40:221-228.
366. Wan H., Korzh S., Li Z., Mudumana S.P., Korzh V., Jiang Y.J., Lin S., Gong Z. Analyses of pancreas development by generation of gfp transgenic zebrafish using an exocrine pancreas-specific elastaseA gene promoter. Exp. Cell Res. 2006, 312:1526-1539.
367. Wang D., Jao L.E., Zheng N., Dolan K., Ivey J., Zonies S., Wu X., Wu K., Yang H., Meng Q., et al. Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:12428-12433.
368. Wang X., Emelyanov A., Korzh V., Gong Z. Zebrafish atonal homologue zath3 is expressed during neurogenesis in embryonic development. Dev. Dyn. 2003, 227:587-592.
369. Wang X., Yang N., Uno E., Roeder R.G., Guo S. A subunit of the mediator complex regulates vertebrate neuronal development. Proc. Natl. Acad. Sci. U.S.A. 2006, 103:17284-17289.
370. Warren J.T., Chandrasekhar A., Kanki J.P., Rangarajan R., Furley A.J., Kuwada J.Y. Molecular cloning and developmental expression of a zebrafish axonal glycoprotein similar to TAG-1. Mech. Dev. 1999, 80:197-201.
371. Wehman A.M., Staub W., Baier H. The anaphase-promoting complex is required in both dividing and quiescent cells during zebrafish development. Dev. Biol. 2007, 303:144-156.
372. Wei X., Luo Y., Hyde D.R. Molecular cloning of three zebrafish lin7 genes and their expression patterns in the retina. Exp. Eye Res. 2006, 82:122-131.
373. Wei X., Malicki J. nagie oko, encoding a MAGUK-family protein, is essential for cellular patterning of the retina. Nat. Genet. 2002, 31:150-157.
374. Wei Y., Allis C. Pictures in cell biology. Trends Cell Biol. 1998, 8:266.
375. Weiland U., Ott H., Bastmeyer M., Schaden H., Giordano S., Stuermer C.A. Expression of an l1-related cell adhesion molecule on developing cns fiber tracts in zebrafish and its functional contribution to axon fasciculation. Mol. Cell. Neurosci. 1997, 9:77-89.
376. Wen L., Wei W., Gu W., Huang P., Ren X., Zhang Z., Zhu Z., Lin S., Zhang B. Visualization of monoaminergic neurons and neurotoxicity of MPTP in live transgenic zebrafish. Dev. Biol. 2008, 314:84-92.
377. Westin J., Lardelli M. Three novel Notch genes in zebrafish: Implications for vertebrate Notch gene evolution and function. Dev. Genes Evol. 1997, 207:51-63.
378. White R.M., Sessa A., Burke C., Bowman T., LeBlanc J., Ceol C., Bourque C., Dovey M., Goessling W., Burns C.E., et al. Transparent adult zebrafish as a tool for in vivo transplantation analysis. Cell Stem Cell 2008, 2:183-189.
379. Whitlock K.E., Westerfield M. The olfactory placodes of the zebrafish form by convergence of cellular fields at the edge of the neural plate. Development 2000, 127:3645-3653.
380. Wienholds E., Schulte-Merker S., Walderich B., Plasterk R.H. Target-selected inactivation of the zebrafish rag1 gene. Science 2002, 297:99-102.
381. Willer G.B., Lee V.M., Gregg R.G., Link B.A. Analysis of the Zebrafish perplexed mutation reveals tissue-specific roles for de novo pyrimidine synthesis during development. Genetics 2005, 170:1827-1837.
382. Williams J.A., Barrios A., Gatchalian C., Rubin L., Wilson S.W., Holder N. Programmed cell death in zebrafish rohon beard neurons is influenced by TrkC1/NT-3 signaling. Dev. Biol. 2000, 226:220-230.
383. Wilson S.W., Ross L.S., Parrett T., Easter S.S. The development of a simple scaffold of axon tracts in the brain of the embryonic zebrafish, Brachydanio rerio. Development 1990, 108:121-145.
384. Woo K., Fraser S.E. Order and coherence in the fate map of the zebrafish nervous system. Development 1995, 121:2595-2609.
385. Wullimann M., Knipp S. Proliferation pattern changes in the zebrafish brain from embryonic through early postembryonic stages. Anat. Embryol. 2000, 202:385-400.
386. Wullimann M.F., Rupp B., Reichert H. Neuroanatomy of the zebrafish brain. Birkhäuser verlag. 1996.
387. Wurst W., Bally-Cuif L. Neural plate patterning: Upstream and downstream of the isthmic organizer. Nat. Rev. Neurosci. 2001, 2:99-108.
388. Xiao T., Roeser T., Staub W., Baier H. A GFP-based genetic screen reveals mutations that disrupt the architecture of the zebrafish retinotectal projection. Development 2005, 132:2955-2967.
389. Yamaguchi M., Imai F., Tonou-Fujimori N., Masai I. Mutations in N-cadherin and a Stardust homolog, Nagie oko, affect cell cycle exit in zebrafish retina. Mech. Dev. 2010, 127:247-264.
390. Yamaguchi M., Tonou-Fujimori N., Komori A., Maeda R., Nojima Y., Li H., Okamoto H., Masai I. Histone deacetylase 1 regulates retinal neurogenesis in zebrafish by suppressing Wnt and Notch signaling pathways. Development 2005, 132:3027-3043.
391. Yang C.T., Sengelmann R.D., Johnson S.L. Larval melanocyte regeneration following laser ablation in zebrafish. J. Invest. Dermatol. 2004, 123:924-929.
392. Yang L., Rastegar S., Strahle U. Regulatory interactions specifying Kolmer-Agduhr interneurons. Development 2010, 137:2713-2722.
393. Yang X., Zou J., Hyde D.R., Davidson L.A., Wei X. Stepwise maturation of apicobasal polarity of the neuroepithelium is essential for vertebrate neurulation. J. Neurosci. 2009, 29:11426-11440.
394. Yazulla S., Studholme K. Neurochemical anatomy of the zebrafish retina as determined by immunocytochemistry. J. Neurocytol. 2001, 30:551-592.
395. Yeo S.Y., Chitnis A.B. Jagged-mediated Notch signaling maintains proliferating neural progenitors and regulates cell diversity in the ventral spinal cord. Proc. Natl. Acad. Sci. U.S.A. 2007, 104:5913-5918.
396. Yeo S.Y., Kim M., Kim H.S., Huh T.L., Chitnis A.B. Fluorescent protein expression driven by her4 regulatory elements reveals the spatiotemporal pattern of Notch signaling in the nervous system of zebrafish embryos. Dev. Biol. 2007, 301:555-567.
397. Yoshida M., Macklin W.B. Oligodendrocyte development and myelination in GFP-transgenic zebrafish. J. Neurosci. Res. 2005, 81:1-8.
398. Yoshikawa S., Kawakami K., Zhao X.C. G2R Cre reporter transgenic zebrafish. Dev. Dyn. 2008, 237:2460-2465.
399. Zannino D.A., Appel B. Olig2+ precursors produce abducens motor neurons and oligodendrocytes in the zebrafish hindbrain. J. Neurosci. 2009, 29:2322-2333.
400. Zecchin E., Conigliaro A., Tiso N., Argenton F., Bortolussi M. Expression analysis of jagged genes in zebrafish embryos. Dev. Dyn. 2005, 233:638-645.
401. Zerucha T., Stuhmer T., Hatch G., Park B.K., Long Q., Yu G., Gambarotta A., Schultz J.R., Rubenstein J.L., Ekker M. A highly conserved enhancer in the Dlx5/Dlx6 intergenic region is the site of cross-regulatory interactions between Dlx genes in the embryonic forebrain. J. Neurosci. 2000, 20:709-721.
402. Zhao X.F., Ellingsen S., Fjose A. Labeling and targeted ablation of specific bipolar cell types in the zebrafish retina. BMC Neurosci. 2009, 10:107.
403. Zhu P., Narita Y., Bundschuh S.T., Fajardo O., Scharer Y.P., Chattopadhyaya B., Bouldoires E.A., Stepien A.E., Deisseroth K., Arber S., et al. Optogenetic Dissection of Neuronal Circuits in Zebrafish using Viral Gene Transfer and the Tet System. Front Neural Circuits 2009, 3:21.