Transcriptional regulatory regions of gap43 needed in developing and regenerating retinal ganglion cells

Developmental Dynamics

Volumn 239, Issue 2, 2010, Pages 482-495

  Kusik, Brandon W ^a   Hammond, Dena R ^a   Udvadia, Ava J ^a  

^a UNIVERSITY OF WISCONSIN MILWAUKEE   (United States)

Author keywords

Axon growth; CNS regeneration; Fugu; Transcriptional regulation; Zebrafish

Indexed keywords

ANIMAL CELL; ANIMAL EXPERIMENT; ANIMAL MODEL; ARTICLE; CELL REGENERATION; CENTRAL NERVOUS SYSTEM; CONTROLLED STUDY; GAP 43 GENE; GENE CONTROL; NERVE FIBER GROWTH; NERVOUS SYSTEM INJURY; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PUFFER FISH; RETINA GANGLION CELL; TRANSCRIPTION REGULATION; ZEBRA FISH;

ANIMALS; ANIMALS, GENETICALLY MODIFIED; BASE SEQUENCE; CONSERVED SEQUENCE; GAP-43 PROTEIN; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MOLECULAR SEQUENCE DATA; PROMOTER REGIONS, GENETIC; REGENERATION; RETINA; RETINAL GANGLION CELLS; TRANSGENES; ZEBRAFISH;

AVES; DANIO RERIO; MAMMALIA; RATTUS; TAKIFUGU; TAKIFUGU RUBRIPES; TETRAODONTIDAE;

EID: 75149113267     PISSN: 10588388     EISSN: 10970177     Source Type: Journal    
DOI: 10.1002/dvdy.22190     Document Type: Article

References (58)

1. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J Mol Biol 215:403-410.
2. Amsterdam A, Burgess S, Golling G, Chen W, Sun Z, Townsend K, Farrington S, Haldi M, Hopkins N. 1999. A large-scale insertional mutagenesis screen in zebra-fish. Genes Dev 13:2713-2724.
3. Bacon A, Kerr NC, Holmes FE, Gaston K, Wynick D. 2007. Characterization of an enhancer region of the galanin gene that directs expression to the dorsal root ganglion and confers responsiveness to axotomy. J Neurosci 27: 6573-6580.
4. Barthel LK, Raymond PA. 1990. Improved method for obtaining 3-microns cryosections for immunocytochemistry. J Histochem Cytochem 38:1383-1388.
5. Becker CG, Becker T. 2007. Growth and pathfinding of regenerating axons in the optic projection of adult fish. J Neurosci Res 85:2793-2799.
6. Bomze HM, Bulsara KR, Iskandar BJ, Caroni P, Skene JH. 2001. Spinal axon regeneration evoked by replacing two growth cone proteins in adult neurons. Nat Neurosci 4:38-43.
7. Bormann P, Zumsteg VM, Roth LW, Reinhard E. 1998. Target contact regulates GAP-43 and alpha-tubulin mRNA levels in regenerating retinal ganglion cells. J Neurosci Res 52:405-419.
8. Brody T, Rasband W, Baler K, Kuzin A, Kundu M, OdenwaldWF. 2008. Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers. BMC Genom 9:371.
9. Cai D, Deng K, Mellado W, Lee J, Ratan RR, Filbin MT. 2002. Arginase I and polyamines act downstream from cyclic AMP in overcoming inhibition of axonal growth MAG and myelin in vitro. Neuron 35:711-719.
10. Cao Z, Gao Y, Bryson JB, Hou J, Chaudhry N, Siddiq M, Martinez J, Spencer T, Carmel J, Hart RB, Filbin MT. 2006. The cytokine interleukin-6 is sufficient but not necessary to mimic the peripheral conditioning lesion effect on axonal growth. J Neurosci 26:5565-5573.
11. Caroni P, Aigner L, Schneider C. 1997. Intrinsic neuronal determinants locally regulate extrasynaptic and synaptic growth at the adult neuromuscular junction. J Cell Biol 136:679-692.
12. Cartharius K, Frech K, Grote K, Klocke B, Haltmeier M, Klingenhoff A, Frisch M, Bayerlein M, Werner T. 2005. MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 21:2933-2942.
13. Cavalli V, Kujala P, Klumperman J, Goldstein LS. 2005. Sunday Driver links axonal transport to damage signaling. J Cell Biol 168:775-787.
14. Chiaramello A, Neuman T, Peavy DR, Zuber MX. 1996. The GAP-43 gene is a direct downstream target of the basic helix-loop-helix transcription factors. J Biol Chem 271:22035-22043.
15. Dent EW, Meiri KF. 1998. Distribution of phosphorylated GAP-43 (neuromodulin) in growth cones directly reflects growth cone behavior. J Neurobiol 35:287-299.
16. Doster SK, Lozano AM, Aguayo AJ, Willard MB. 1991. Expression of the growth-associated protein GAP-43 in adult rat retinal ganglion cells following axon injury. Neuron 6:635-647.
17. Elnitski L, Riemer C, Petrykowska H, Florea L, Schwartz S, Miller W, Hardison R. 2002. PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences. Genomics 80:681-690.
18. Fujimori KE, Kawasaki T, Deguchi T, Yuba S. 2008. Characterization of a nervous system-specific promoter for growth-associated protein 43 gene in Medaka (Oryzias latipes). Brain Res 1245:1-15.
19. Goldman D, Ding J. 2000. Different regulatory elements are necessary for alpha1 tubulin induction during CNS development and regeneration. Neuroreport 11:3859-3863.
20. He Q, Dent EW, Meiri KF. 1997. Modulation of actin filament behavior by GAP-43 (neuromodulin) is dependent on the phosphorylation status of serine 41, the protein kinase C site. J Neurosci 17: 3515-3524.
21. Jacobson RD, Virag I, Skene JH. 1986. A protein associated with axon growth, GAP-43, is widely distributed and developmentally regulated in rat CNS. J Neurosci 6:1843-1855.
22. Kaneda M, Nagashima M, Nunome T, Muramatsu T, Yamada Y, Kubo M, Muramoto K, Matsukawa T, Koriyama Y, Sugitani K, Vachkov IH, Mawatari K, Kato S. 2008. Changes of phospho-growth-associated protein 43 (phospho-GAP43) in the zebrafish retina after optic nerve injury: a long-term observation. Neurosci Res 61:281-288.
23. Kruger K, Tam AS, Lu C, Sretavan DW. 1998. Retinal ganglion cell axon progression from the optic chiasm to initiate optic tract development requires cell autonomous function of GAP-43. J Neurosci 18:5692-5705.
24. Linney E, Udvadia AJ. 2004. Construction and detection of fluorescent, germline transgenic zebrafish. Methods Mol Biol 254:271-288.
25. Maier DL, Mani S, Donovan SL, Soppet D, Tessarollo L, McCasland JS, Meiri KF. 1999. Disrupted cortical map and absence of cortical barrels in growthassociated protein (GAP)-43 knockout mice. Proc Natl Acad Sci USA 96: 9397-9402.
26. McCormick MB, Tamimi RM, Snider L, Asakura A, Bergstrom D, Tapscott SJ. 1996. NeuroD2 and neuroD3: distinct expression patterns and transcriptional activation potentials within the neuroD gene family. Mol Cell Biol 16: 5792-5800.
27. Meyer RL, Miotke JA, Benowitz LI. 1994. Injury induced expression of growthassociated protein-43 in adult mouse retinal ganglion cells in vitro. Neuroscience 63:591-602.
28. Nedivi E, Basi GS, Akey IV, Skene JH. 1992. A neural-specific GAP-43 core promoter located between unusual DNA elements that interact to regulate its activity. J Neurosci 12:691-704.
29. Neumann S, Skinner K, Basbaum AI. 2005. Sustaining intrinsic growth capacity of adult neurons promotes spinal cord regeneration. Proc Natl Acad Sci USA 102:16848-16852.
30. Nguyen L, He Q, Meiri KF. 2009a. Regulation of GAP-43 at serine 41 acts as a switch to modulate both intrinsic and extrinsic behaviors of growing neurons, via altered membrane distribution. Mol Cell Neurosci 41:62- 73.
31. Nguyen T, Lindner R, Tedeschi A, Forsberg K, Green A, Wuttke A, Gaub P, Di Giovanni S. 2009b. NFAT-3 is a transcriptional repressor of the growth-associated protein 43 during neuronal maturation. J Biol Chem 284:18816-18823.
32. Odenwald WF, Rasband W, Kuzin A, Brody T. 2005. EVOPRINTER, a multigenomic comparative tool for rapid identification of functionally important DNA. Proc Natl Acad Sci USA 102: 14700-14705.
33. Perlson E, Hanz S, Ben-Yaakov K, Segal-Ruder Y, Seger R, Fainzilber M. 2005. Vimentin-dependent spatial translocation of an activated MAP kinase in injured nerve. Neuron 45:715-726.
34. Qiu J, Cai D, Dai H, McAtee M, Hoffman PN, Bregman BS, Filbin MT. 2002. Spinal axon regeneration induced by elevation of cyclic AMP. Neuron 34:895-903.
35. Reinhard E, Nedivi E, Wegner J, Skene JH, Westerfield M. 1994. Neural selective activation and temporal regulation of a mammalian GAP-43 promoter in zebrafish. Development 120:1767-1775.
36. Richardson PM, Issa VM. 1984. Peripheral injury enhances central regeneration of primary sensory neurones. Nature 309:791-793.
37. Santini S, Boore JL, Meyer A. 2003. Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters. Genome Res 13:1111-1122.
38. Schaden H, Stuermer CA, Bahr M. 1994. GAP-43 immunoreactivity and axon regeneration in retinal ganglion cells of the rat. J Neurobiol 25:1570-1578.
39. Schug J. 2003. Using TESS to Predict Transcription Factor Binding Sites in DNA Sequence. In: Baxevanis AD, editor. Current protocols in bioinformatics. Hoboken, NJ: John Wiley and Sons. Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W. 2000. PipMaker: a web server for aligning two genomic DNA sequences. Genome Res 10:577-586.
40. Senut MC, Gulati-Leekha A, Goldman D. 2004. An element in the alpha1-tubulin promoter is necessary for retinal expression during optic nerve regeneration but not after eye injury in the adult zebrafish. J Neurosci 24:7663-7673.
41. Shen Y, Mani S, Donovan SL, Schwob JE, Meiri KF. 2002. Growth-associated protein-43 is required for commissural axon guidance in the developing vertebrate nervous system. J Neurosci 22:239-247.
42. Skene JH. 1989. Axonal growth-associated proteins. Annu Rev Neurosci 12: 127-156.
43. Smith DS, Skene JH. 1997. A transcription-dependent switch controls competence of adult neurons for distinct modes of axon growth. J Neurosci 17: 646-658.
44. Spencer TK, Mellado W, Filbin MT. 2008. BDNF activates CaMKIV and PKA in parallel to block MAG-mediated inhibition of neurite outgrowth. Mol Cell Neurosci 38:110-116.
45. Starr RG, Lu B, Federoff HJ. 1994. Functional characterization of the rat GAP-43 promoter. Brain Res 638:211-220.
46. Strittmatter SM, Fankhauser C, Huang PL, Mashimo H, Fishman MC. 1995. Neuronal pathfinding is abnormal in mice lacking the neuronal growth cone protein GAP-43. Cell 80:445-452.
47. Tedeschi A, Nguyen T, Puttagunta R, Gaub P, Di Giovanni S. 2008. A p53-CBP/p300 transcription module is required for GAP-43 expression, axon outgrowth, and regeneration. Cell Death Differ 16:543- 554.
48. Thermes V, Grabher C, Ristoratore F, Bourrat F, Choulika A, Wittbrodt J, Joly JS. 2002. I-SceI meganuclease mediates highly efficient transgenesis in fish. Mech Dev 118:91-98.
49. Udvadia AJ. 2008. 3.6 kb genomic sequence from Takifugu capable of promoting axon growth-associated gene expression in developing and regenerating zebrafish neurons. Gene Expr Patterns 8:382-388.
50. Udvadia AJ, Koster RW, Skene JH. 2001. GAP-43 promoter elements in transgenic zebrafish reveal a difference in signals for axon growth during CNS development and regeneration. Development 128:1175-1182.
51. Vanselow J, Grabczyk E, Ping J, Baetscher M, Teng S, Fishman MC. 1994. GAP-43 transgenic mice: dispersed genomic sequences confer a GAP-43-like expression pattern during development and regeneration. J Neurosci 14:499-510.
52. Venkatesh B, Yap WH. 2005. Comparative genomics using fugu: a tool for the identification of conserved vertebrate cis-regulatory elements. Bioessays 27: 100-107.
53. Weber JR, Skene JH. 1997. Identification of a novel repressive element that contributes to neuron-specific gene expression. J Neurosci 17:7583-7593.
54. Weber JR, Skene JH. 1998. The activity of a highly promiscuous AP-1 element can be confined to neurons by a tissueselective repressive element. J Neurosci 18:5264-5274.
55. Westerfield M. 2000. The Zebrafish Book: A guide for the laboratory use of zebra-fish (Danio rerio). Eugene, OR: University of Oregon Press. 363 p.
56. Yamanoue Y, Miya M, Inoue JG, Matsuura K, Nishida M. 2006. The mitochondrial genome of spotted green pufferfish Tetraodon nigroviridis (Teleostei: Tetraodontiformes) and divergence time estimation among model organisms in fishes. Genes Genet Syst 81:29-39.
57. Ylera B, Erturk A, Hellal F, Nadrigny F, Hurtado A, Tahirovic S, Oudega M, Kirchhoff F, Bradke F. 2009. Chronically CNS-injured adult sensory neurons gain regenerative competence upon a lesion of their peripheral axon. Curr Biol 19:930-936.
58. Zhang Y, Bo X, Schoepfer R, Holtmaat AJ, Verhaagen J, Emson PC, Lieberman AR, Anderson PN. 2005. Growthassociated protein GAP-43 and L1 act synergistically to promote regenerative growth of Purkinje cell axons in vivo. Proc Natl Acad Sci USA 102:14883-14888.