Phylogeographic structure of jack pine (Pinus banksiana; Pinaceae) supports the existence of a coastal glacial refugium in northeastern North America

American Journal of Botany

Volumn 97, Issue 11, 2010, Pages 1903-1912

  Godbout, Julie ^a   Beaulieu, Jean ^a,b   Bousquet, Jean ^a  

^a UNIVERSITÉ LAVAL   (Canada)

^b LAURENTIAN FORESTRY CENTRE   (Canada)

Author keywords

Chloroplast DNA; Glacial refugia; Jack pine; Maritime provinces; Mitochondrial DNA; Phylogeography; Pinaceae; Pinus banksiana

Indexed keywords

BOREAL FOREST; CHLOROPLAST; COASTAL ZONE; CONIFEROUS TREE; GENE FLOW; GENETIC MARKER; GENETIC STRUCTURE; GENETIC VARIATION; LAST GLACIATION; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; POPULATION DISTRIBUTION; POPULATION STRUCTURE; REFUGIUM; SPECIES DIVERSITY;

NORTH AMERICA;

CONIFEROPHYTA; PINACEAE; PINUS BANKSIANA;

EID: 78249279080     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.3732/ajb.1000148     Document Type: Article

References (72)

1. Aizawa, M., H. Yoshimaru, H. Saito, T. Katsuki, T. Kawahara, K. Kitamura, F. Shi, and M. Kaji. 2007. Phylogeography of a northeast Asian spruce, Picea jezoensis, inferred from genetic variation observed in organelle DNA markers. Molecular Ecology 16: 3393-3405.
2. Arbogast, B. S. 1999. Mitochondrial DNA phylogeography of the New World fl ying squirrels (Glaucomys): Implications for Pleistocene bio-geography. Journal of Mammalogy 80: 142-155.
3. Bartlein, P. J., K. H. Anderson, P. M. Anderson, M. E. Edwards, C. J. Mock, R. S. Thompson, R. S. Webb et al. 1998. Paleoclimate simulations for North America over the past 21,000 years: Features of the simulated climate and comparisons with paleoenvironmental data. Quaternary Science Reviews 17: 549-585.
4. Bialozyt, R., B. Ziegenhagen, and R. J. Petit.2006. Contrastingeffects of long distance seed dispersal on genetic diversity during range expansion. Journal of Evolutionary Biology 19: 12-20.
5. Boys, J., M. Cherry, and S. Dayanandan. 2005. Microsatellite analysis reveals genetically distinct populations of red pine (Pinus resinosa, Pinaceae). American Journal of Botany 92: 833-841.
6. Brant, S. V., and G. Orti. 2003. Phylogeography of the northern short-tailed shrew, Blarina brevicauda (Insectivora: Soricidae): Past fragmentation and postglacial recolonization. Molecular Ecology 12: 1435-1449.
7. Burban, C., and R. J. Petit. 2003. Phylogeography of maritime pine inferred with organelle markers having contrasted inheritance. Molecular Ecology 12: 1487-1495.
8. Critchfield, W. B. 1985. The late Quaternary history of lodgepole and jack pines. Canadian Journal of Forest Research 15: 749-772.
9. Dancik, B. P., and F. C. Yeh. 1983. Allozyme variability and evolution of lodgepole pine (Pinus contorta var. latifolia) and jack pine (P. bank-siana) in Alberta. Canadian Journal of Genetics and Cytology 25: 57-64.
10. de Lafontaine, G., J. Turgeon, and S. Payette. 2010. Phylogeography of white spruce (Picea glauca) in eastern North America reveals contrasting ecological trajectories. Journal of Biogeography 37: 741-751.
11. Dong, J., and D. B. Wagner. 1993. Taxonomic and population differentiation of mitochondrial diversity in Pinus banksiana and Pinus con-torta. Theoretical and Applied Genetics 86: 573-578.
12. Du, F. K., R. J. Petit, and J. Q. Liu. 2009. More introgression with less gene fl ow: Chloroplast vs. mitochondrial DNA in the Piceaasperata complex in China, and comparison with other conifers. Molecular Ecology 18: 1396-1407.
13. Dupanloup, I., S. Schneider, and L. Excoffier. 2002. A simulated annealing approach to defi ne the genetic structure of populations. Molecular Ecology 11: 2571-2581.
14. Dyke, A. S., J. T. Andrews, P. U. Clark, J. H. England, G. H. Miller, J. Shaw, and J. J. Veillette. 2002. The Laurentide and Innuitian ice sheets during the Last Glacial Maximum. Quaternary Science Reviews 21: 9-31.
15. Dyke, A. S., A. Moore, and L. Robertson. 2003. Deglaciation of North America. Geological Survey of Canada: Open File 1574.
16. Edmonds, C. A., A. S. Lillie, and L. L. Cavalli-Sforza. 2004. Mutations arising in the wave front of an expanding population. Proceedings of the National Academy of Sciences, USA 101: 975-979.
17. Ennos, R. A. 1994. Estimating the relative rates of pollen and seed migration among plant populations. Heredity 72: 250-259.
18. Excoffier, L., G. Laval, and S. Schneider. 2005. Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online 1: 47-50.
19. Excoffier, L., R. J. Petit, and M. Foll. 2009. Genetic consequences of range expansions. Annual Review of Ecology Evolution and Systematics 40: 481-501.
20. Gamache, I., J. P. Jaramillo-Correa, S. Payette, and J. Bousquet 2003. Diverging patterns of mitochondrial and nuclear DNA diversity in subarctic black spruce: Imprint of a founder effect associated with postglacial colonization. Molecular Ecology 12: 891-901.
21. Gérardi, S., J. P. Jaramillo-Correa, J. Beaulieu, and J. Bousquet 2010. From glacial refugia to modern populations: New assemblages of organelle genomes generated by differential cytoplasmic gene flow in transcontinental black spruce. Molecular Ecology 19: in press.
22. Godbout, J., A. Fazekas, C. H. Newton, F. C. Yeh, and J. Bousquet 2008. Glacial vicariance in the Pacifi c Northwest: Evidence from a lodgepole pine mitochondrial DNA minisatellite for multiple genetically distinct and widely separated refugia. Molecular Ecology 17: 2463-2475.
23. Godbout, J., J. P. Jaramillo-Correa, J. Beaulieu, and J. Bousquet 2005. A mitochondrial DNA minisatellite reveals the postglacial history of jack pine (Pinus banksiana), a broad-range North American conifer. Molecular Ecology 14: 3497-3512.
24. Green, D. G. 1987. Pollen evidence for the postglacial origins of Nova Scotia's forests. Canadian Journal of Botany 65: 1163-1179.
25. Gugerli, F., C. Sperisen, U. Büchler, F. Magni, T. Geburek, S. Jeandroz, and J. Senn. 2001. Haplotype variation in a mitochon-drial tandem repeat of Norway spruce (Picea abies) populations suggests a serious founder effect during postglacial re-colonization of the western Alps. Molecular Ecology 10: 1255-1263.
26. Gugger, P. F., J. S. McLachlan, P. S. Manos, and J. S. Clark. 2008. Inferring long-distance dispersal and topographic barriers during post-glacial colonization from the genetic structure of red maple (Acer rubrum L.) in New England. Journal of Biogeography 3 5: 1665-1673.
27. Hampe, A., and R. J. Petit. 2005. Conserving biodiversity under climate change: The rear edge matters. Ecology Letters 8: 461-467.
28. Hinds, H. R., C. M. Young, and S. R. Clayden. 2000. Flora of New Brunswick: A manual for the identifi cation of the vascular plants of New Brunswick, 2nd ed. University of New Brunswick, Fredericton, New Brunswick, Canada.
29. Hoffman, E. A., and M. S. Blouin. 2004. Evolutionary history of the northern leopard frog: Reconstruction of phylogeny, phylogeography, and historical changes in population demography from mitochondrial DNA. Evolution 58: 145-159.
30. Jackson, S. T., J. T. Overpeck, T. Webb III, S. E. Keattch, and K. H. Anderson. 1997. Mapped plant-macrofossil and pollen records of late Quaternary vegetation change in eastern North America. Quaternary Science Reviews 16: 1-70.
31. Jackson, S. T., R. S. Webb, K. H. Anderson, J. T. Overpeck, T. Webb III, J. W. Williams, and B. C. S. Hansen. 2000. Vegetation and environment in eastern North America during the Last Glacial Maximum. Quaternary Science Reviews 19: 489-508.
32. Jaramillo-Correa, J. P., J. Beaulieu, and J. Bousquet. 2004. Variation in mitochondrial DNA reveals multiple distant glacial refugia in black spruce (Picea mariana), a transcontinental North American conifer. Molecular Ecology 13: 2735-2747.
33. Jaramillo-Correa, J. P., J. Beaulieu, D. P. Khasa, and J. Bousquet 2009. Inferring the past from the present phylogeographic structure of North American forest trees: Seeing the forest for the genes. Canadian Journal of Forest Research 39: 286-307.
34. Jaramillo-Correa, J. P., J. Beaulieu, F. T. Ledig, and J. Bousquet. 2006. Decoupled mitochondrial and chloroplast DNA population structure reveals Holocene collapse and population isolation in a threatened Mexican-endemic conifer. Molecular Ecology 15: 2787-2800.
35. Kasischke, E. S. 2000. Boreal ecosystems in the global carbon cycle. In E. S. Kasischke and B. J. Stocks [eds.], Fire, climate change, and carbon cycling in the boreal forest, vol. 138, Ecological studies series, 19-30. Springer-Verlag, New York, New York, USA.
36. Keddy, P. A., and I. C. Wisheu. 1989. Ecology, biogeography, and conservation of coastal plain plants: Some general principles from the study of Nova Scotian wetlands. Rhodora 91: 72-94.
37. Klimaszewski, J., C. G. Majka, and D. Langor. 2006. Review of the North American Tarphiota Casey, with a description of a new seashore-inhabiting Atheta species exhibiting convergent characteristics (Coleoptera: Staphylinidae: Aleocharinae). Entomological Science 9: 67-78.
38. Laroche, J., P. Li, L. Maggia, and J. Bousquet. 1997. Molecular evolution of angiosperm mitochondrial introns and exons. Proceedings of the National Academy of Sciences, USA 94: 5722-5727.
39. Lee-Yaw, J. A., J. T. Irwin, and D. M. Green. 2008. Postglacial range expansion from northern refugia by the wood frog, Rana sylvatica. Molecular Ecology 17: 867-884.
40. Livingstone, D. A. 1968. Some interstadial and postglacial pollen diagrams from eastern Canada. Ecological Monographs 38: 87-125.
41. Loehle, C. 2007. Predicting Pleistocene climate from vegetation in North America. Climate of the Past 3: 109-118.
42. Magni, C. R., A. Ducousso, H. Caron, R. J. Petit, and A. Kremer 2005. Chloroplast DNA variation of Quercus rubra L. in North America and comparison with other Fagaceae. Molecular Ecology 14: 513-524.
43. Magri, D., G. G. Vendramin, B. Comps, I. Dupanloup, T. Geburek, D. Gömöry, L. Małgorzata et al. 2006. A new scenario for the Quaternary history of European beech populations: Palaeobotanical evidence and genetic consequences. New Phytologist 171: 199-221.
44. Majka, C. G., and D. B. McCorquodale. 2006. The Coccinellidae (Coleoptera) of the Maritime Provinces of Canada: New records, bio-geographic notes, and conservation concerns. Zootaxa 1154: 49-68.
45. Marshall, H. D., C. Newton, and K. Ritland. 2002. Chloroplast phy-logeography and evolution of highly polymorphic microsatellites in lodgepole pine (Pinus contorta). Theoretical and Applied Genetics 104: 367-378.
46. Mayle, F. E., and L. C. Cwynar. 1995. Impact of the Younger Dryas cooling event upon lowland vegetation of Maritime Canada. Ecological Monographs 65: 129-154.
47. McLachlan, J. S., J. S. Clark, and P. S. Manos. 2005. Molecular indicators of tree migration capacity under rapid climate change. Ecology 86: 2088-2098.
48. Miller, M. P. 2005. Alleles In Space (AIS): Computer software for the joint analysis of interindividual spatial and genetic information. Journal of Heredity 96: 722-724.
49. Miller, M. P., M. R. Bellinger, E. D. Forsman, and S. M. Haig. 2006. Effects of historical climate change, habitat connectivity, and vicariance on genetic structure and diversity across the range of the red tree vole (Phenacomys longicaudus) in the Pacifi c Northwestern United States. Molecular Ecology 15: 145-159.
50. Milot, E., H. L. Gibbs, and K. A. Hobson. 2000. Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechia). Molecular Ecology 9: 667-681.
51. Neale, D. B., and R. R. Sederoff. 1988. Inheritance and evolution of conifer organelle genomes. In J. Hanover and D. Keathley [eds.], Genetic manipulation of woody plants, 251-264. Plenum Press, New York, New York, USA.
52. Nei, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, New York, USA.
53. Oetting, W. S., H. K. Lee, D. J. Flanders, G. L. Wiesner, T. A. Sellers, and R. A. King. 1995. Linkage analysis with multiplexed short tandem repeat polymorphisms using infrared fl uorescence and M13 tailed primers. Genomics 30: 450-458.
54. Petersen, S. D., and D. T. Stewart. 2006. Phylogeography and conservation genetics of southern fl ying squirrels (Glaucomys volans) from Nova Scotia. Journal of Mammalogy 87: 153-160.
55. Petit, R. J., U. M. Csaikl, S. Bordacs, K. Burg, E. Coart, J. Cottrell, D. van Dam et al. 2002. Chloroplast DNA variation in European white oaks - Phylogeography and patterns of diversity based on data from over 2600 populations. Forest Ecology and Management 156: 5-26.
56. Petit, R. J., and G. G. Vendramin. 2007. Plant phylogeography based on organelle genes: An introduction. In S. Weiss and N. Ferrand [eds.], Phylogeography of southern European refugia - Evolutionary perspectives on the origins and conservation of European biodiversity, 23-97. Springer, Dordrecht, Netherlands.
57. Reimer, P.J., M.G.L. Baillie, E. Bard, A. Bayliss, J.W. Beck, P.G. Blackwell, C.B. Ramsey et al. 2009. IntCal09 and Marine09 radiocarbon age calibration curves, 0 - 50,000 years cal BP. Radiocarbon 51: 1111-1150.
58. Ross, H. A., and J. L. Hawkins. 1986. Genetic variation among local populations of jack pine (Pinus banksiana). Canadian Journal of Genetics and Cytology 28: 453-458.
59. Rudolph, T. D., and P. R. Laidly. 1990. Pinus banksiana Lamb. jack pine. In R. M. Burns and B. H. Honkala [eds.], Silvics of North America, vol. 1., Conifers, vol. 271, Agriculture handbook, 280-293. USDA Forest Service, Washington, DC, USA.
60. Saenz-Romero, C., R. P. Guries, and A. I. Monk. 2001. Landscape genetic structure of Pinus banksiana: Allozyme variation. Canadian Journal of Botany 79: 871-878.
61. Sei, M., and A. H. Porter. 2007. Delimiting species boundaries and the conservation genetics of the endangered maritime ringlet butterfl y (Coenonympha nipisiquit McDunnough). Molecular Ecology 16: 3313-3325.
62. Shaw, J., D. J. W. Piper, G. B. J. Fader, E. L. King, B. J. Todd, T. Bell, M. J. Batterson, and D. G. E. Liverman. 2006. A conceptual model of the deglaciation of Atlantic Canada. Quaternary Science Reviews 2 5: 2059-2081.
63. Slatkin, M. 1985. Gene flow in natural populations. Annual Review of Ecology and Systematics 16: 393-430.
64. Soltis, D. E., A. B. Morris, J. S. McLachlan, P. S. Manos, and P. S. Soltis. 2006. Comparative phylogeography of unglaciated eastern North America. Molecular Ecology 15: 4261-4293.
65. Stoehr, M. U., and C. H. Newton. 2002. Evaluation of mating dynamics in a lodgepole pine seed orchard using chloroplast DNA markers. Canadian Journal of Forest Research 32: 469-476.
66. Vendramin, G. G., L. Lelli, P. Rossi, and M. Morgante. 1996. A set of primers for the amplifi cation of 20 chloroplast microsatellites in Pinaceae. Molecular Ecology 5: 595-598.
67. Walter, R., and B. K. Epperson. 2001. Geographic pattern of genetic variation in Pinus resinosa: Area of greatest diversity is not the origin of postglacial populations. Molecular Ecology 10: 103-111.
68. Walter, R., and B. K. Epperson. 2005. Geographic pattern of genetic diversity in Pinus resinosa: Contact zone between descendants of glacial refugia. American Journal of Botany 92: 92-100.
69. Weir, B. S. 1996. Genetic data analysis II. Sinauer, Sunderland, Massachusetts, USA.
70. Whitehead, D. R. 1964. Fossil pine pollen and full-glacial vegetation in southeastern North Carolina. Ecology 45: 767-777.
71. Williams, J. W., B. N. Shuman, T. Webb III, P. J. Bartlein, and P. L. Leduc 2004. Late-Quaternary vegetation dynamics in North America: Scaling from taxa to biomes. Ecological Monographs 74: 309-334.
72. Williams, J. W., T. Webb III, P. H. Richard, and P. Newby. 2000. Late Quaternary biomes of Canada and the eastern United States. Journal of Biogeography 27: 585-607.