Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechia)

Molecular Ecology

Volumn 9, Issue 6, 2000, Pages 667-681

  Milot, Emmanuel ^a,c   Lisle Gibbs, H ^a   Hobson, Keith A ^b  

^a MCMASTER UNIVERSITY   (Canada)

^b ENVIRONMENT CANADA   (Canada)

^c UNIVERSITÉ DU QUÉBEC À MONTRÉAL   (Canada)

Author keywords

Coalescent analysis; Dendroica petechia; mtDNA; Phylogeography; Population structure; Speciation; Yellow warblers

Indexed keywords

CANADA; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; MIGRATION; MITOCHONDRIAL DNA; MODEL; POPULATION GENETICS; UNITED STATES; WILDLIFE CONSERVATION;

ALASKA; ANIMALS; BASE SEQUENCE; BIRDS; CANADA; DNA, MITOCHONDRIAL; FEMALE; GENETICS, POPULATION; HAPLOTYPES; MALE; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMORPHISM, GENETIC; SOFTWARE; VARIATION (GENETICS);

AVES; DENDROICA PETECHIA; PASSERIFORMES; VERTEBRATA;

EID: 6744222805     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-294X.2000.00897.x     Document Type: Article

References (53)

1. American Ornithologists' Union (1957) Checklist of North American Birds. 5th edn. AOU, Baltimore, Maryland.
2. Avise JC (1994) Molecular Markers, Natural History, and Evolution. Chapman & Hall, New York.
3. Avise JC, Walker D (1998) Pleistocene phylogeographic effects on avian populations and the speciation process. Proceedings of the Royal Society of London, B, 265, 457-463.
4. Baker AJ, Daugherty CH, Colbourne R, McLennan JL (1995) Flightless brown kiwis of New Zealand possess extremely sub-divided population structure and cryptic species like small mammals. Proceedings of the National Academy of Science of the USA, 92, 8254-8258.
5. Baker AJ, Marshall HD (1997) Mitochondrial DNA sequences as tools for understanding evolution. In: Avian Molecular Evolution and Systematics (ed. Mindell DP), pp. 51-82. Academic Press, San Diego.
6. Ball RM, Avise JC (1992) Mitochondrial DNA phylogeographic differentiation among avian populatins and the evolutionary significance of subspecies. Auk, 109, 626-636.
7. Barrowclough GF (1980) Gene flow, effective population sizes, and genetic variance components in birds. Evolution, 36, 1020-1029.
8. Barrowclough GF (1983) Biochemical studies of microevolutionary processes. In: Perspectives in Ornithology (eds Brush AH, Clark GA Jr), pp. 223-261. Cambridge University Press, Cambridge.
9. Barrowclough GF, Shields GF (1984) Karyotypic evolution and long-term effective population sizes of birds. Auk, 101, 99-102.
10. Beerli P, Felsenstein J (1999) Maximum likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. Genetics, 152, 763-773.
11. Bermingham E, Rohwer S, Freeman S, Wood C (1992) Vicariance biogeography in the Pleistocene and speciation in North American wood warblers: a test of Mengel's model. Proceedings of the National Academy of Science of the USA, 89, 6624-6628.
12. Browning MR (1994) A taxonomical review of Dendroica petechia (yellow warbler) (Aves: Parulinae). Proceedings of the Biological Society of Washington, 107, 27-51.
13. Edwards SV (1993a) Long-distance gene flow in a cooperative breeder detected in genealogies of mitochondrial DNA lineages. Proceedings of the Royal Society of London, Series B, 252, 177-185.
14. Edwards SV (1993b) Mitochondrial gene genealogy and gene flow among island and mainland populations of a sedentary songbird, the Grey-crowned Babbler, Pomatostomus temporalis. Evolution, 47, 1118-1137.
15. Edwards SV (1997) Relevance of microevolutionary processes to higher level molecular systematics. In: Avian Molecular Evolution and Systematics (ed. Mindell DP), pp. 251-278. Academic Press, San Diego.
16. Excoffier L, Smouse PE, Quattro JM (1992) Analysis of molecular variance inferred from metric distances among DNA haplotypes. Application to human mitochondrial DNA. Genetics, 131, 479-491.
17. Felsenstein J (1993) Phylogeny Inference Package, v. 3.5c., University of Washington.
18. Fu Y-X, Li W-H (1993) Statistical tests of neutrality of mutations. Genetics, 133, 693-709.
19. Gill FB, Mostrom AM, Mack AL (1993) Speciation in North American chickadees. I. Patterns of mtDNA genetic divergence. Evolution, 47, 195-212.
20. Girman D, Kimura M, Mila B, Wade P, Smith TB (2000) Population structure and the use of molecular markers to link wintering and breeding populations of Wilson's Warbler (Wilsonia pusilla), a Neotropical migrant. Molecular Ecology, in press.
21. Griffiths RC (1998) GENETREE. Available from http:// www.maths.monash.edu.au/∼mbahlo/mpg/gtree.html.
22. Griffiths RC (2000) Ancestral inference from gene trees. In: Genes, Fossils, and Behaviour: an Integrated Approach to Human Evolution (eds Donnelly P, Foley R). IOS Press, Amsterdam.
23. Griffiths RC, Tavaré S (1994a) Simulating probability distributions in the coalescent. Theoretical Population Biology, 46, 131-159.
24. Griffiths RC, Tavaré S (1994b) Sampling theory for neutral alleles in a varying environment. Philosophical Transactions of the Royal Society of London, Series B, 344, 403-410.
25. Holsinger KE, Mason-Gamer RJ (1996) Hierarchical analysis of nucleotide diversity in geographically structured populations. Genetics, 142, 629-639.
26. Hudson R (1991) Gene genealogies and the coalescent process. Oxford Surveys in Evolutionary Biology, 7, 1-44.
27. Kishino H, Hasegawa M (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. Journal of Molecular Evolution, 29, 170-179.
28. Klicka J, Zink RM (1997) The importance of recent ice ages in speciation. A failed paradigm. Science, 277, 1666-1669.
29. Klicka J, Zink RM (1999) Pleistocene effects on North American songbird evolution. Proceedings of the Royal Society of London, Series B, 266, 695-700.
30. Klein NK, Brown WM (1994) Intraspecific molecular phylogeny in the yellow warbler, Dendrocia petechia, and implications for avian biogeography in the tropics. Evolution, 48, 1914-1932.
31. Kuhner M, Yamato J, Felsenstein J (1998) Maximum likelihood estimation of population growth rates based on the coalescent. Genetics, 149, 429-434.
32. Marshall HD, Baker AJ (1999) Colonization history of Atlantic Island common chaffinches (Fringilla coelebs) revealed by mitochondrial DNA. Molecular Phylogenetics and Evolution, 11, 201-212.
33. Mengel RM (1964) The probable history of species formation in some northern wood warblers (Parulidae). Living Bird, 3, 9-43.
34. Merila J, Bjoklund M, Baker AJ (1997) Historical demography and present day population structure of the Greenfinch-An analysis of mtDNA control region sequences. Evolution, 51, 946-956.
35. Moritz C (1994) Applications of mitochondrial DNA analysis in conservation: a critical review. Molecular Ecology, 3, 401-411.
36. Nei M (1982) Evolution of human races at the gene level. In: Human Genetics, Part a: the Unfolding Genome. Proceedings of the Sixth International Congress of Human Genetics (eds Bonne-Tamir B, Cohen T, Goodman RM), pp. 167-181. Alan R. Liss, Inc., New York, NY.
37. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press. New York, NY.
38. Pielou EC (1991) After the Ice Age. The Return of Life to Glaciated North America. University of Chicago Press, Chicago, IL.
39. Price TD, Gibbs HL, De Sousa L, Richman AD (1998) Different timings of the adaptive radiations of North American and Asian warblers. Proceedings of the Royal Society of London, Series B, 265, 1969-1975.
40. Rice WR (1989) Analyzing tables of statistical tests. Evolution, 43, 223-225.
41. Robinson SK, Thompson FR, Donovan TM, Whitehead DR, Faaborg J (1995) Regional forest fragmentation and the nesting success of migratory birds. Science, 267, 1987-1990.
42. Rosas J, Rozas R (1997) DnaSP. Version 2.0: a novel software package for extensive molecular population genetics analysis. Computer Applications in Bioscience, 13, 307-311.
43. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution, 4, 406-425.
44. Sauer JR, Hines JE, Gough G, Thomas I, Peterjohn BG (1997) The North American Breeding Bird Survey Results and Analysis, Version 96.4. Patuxent Wildlife Research Center, Laurel, Maryland.
45. Sitnikova T, Rzhetsky A, Nei M (1995) Interior-branch and bootstrap tests of phylogenetic trees. Molecular Biology and Evolution, 12, 319-333.
46. Slatkin M, Maddison WP (1989) A cladistic measure of gene flow inferred from the phylogenies of alleles. Genetics, 123, 603-613.
47. Swofford D (1993) Phylogenetic Analyses Using Parsimony, v. 3.0, Ilinois Natural History Survey.
48. Tarr CL (1995) Primers for amplification and determination of mitochondrial control-region sequences in oscine passerines. Molecular Ecology, 4, 527-529.
49. Wenink PW, Baker AJ, Tilanus MGJ (1993) Hypervariable control region sequences reveal global population structuring in a long-distance migrant shorebird, the Dunlin, Calidris alpina. Proceedings of the National Academy of Science of the USA, 90, 94-98.
50. Wenink PW, Baker AJ (1996) Mitochondrial DNA lineages in composite flocks of migratory Dunlins, Calidris alpina. Auk, 113, 744-756.
51. Wills C (1996) Topiary pruning and weighting reinforce an African origin for the human mitochondrial tree. Evolution, 50, 977-989.
52. Wilson AC, Cann RL, Carr SM et al. (1985) Mitochondrial DNA and two perspectives on evolutionary genetics. Biological Journal of the Linnecm Society, 26, 375-400.
53. Zink RM (1997) Phylogeographic studies of North American birds. In: Avian Molecular Evolution and Systematics (ed. Mindell DP), pp. 301-324. Academic Press, San Diego.