Application of probes in live cell imaging

Journal of Epithelial Biology and Pharmacology

Volumn 3, Issue , 2010, Pages 40-48

  Chen, Hong ^a   Bai, Chunxue ^a   Wang, Xiangdong ^a  

^a FUDAN UNIVERSITY   (China)

Author keywords

Live cell imaging; Probes

Indexed keywords

CELL PROTEIN; DNA; FLUORESCENT DYE; GOLD NANOPARTICLE; GREEN FLUORESCENT PROTEIN; ION; LIPID; NITRIC OXIDE; PROTEINASE; QUANTUM DOT; RADICAL; RNA;

APOPTOSIS; ARTICLE; ATOMIC FORCE MICROSCOPY; CANCER CELL; CELL ORGANELLE; CONFOCAL MICROSCOPY; CYTOLOGY; FLUORESCENCE LIFETIME IMAGING MICROSCOPY; FLUORESCENCE RESONANCE ENERGY TRANSFER; LIVE CELL IMAGING; MICROSCOPY; MOLECULAR IMAGING; PRIORITY JOURNAL; SCANNING ION CONDUCTANCE MICROSCOPY; TWO PHOTON EXCITATION FLUORESCENCE MICROSCOPY;

EID: 78249264165     PISSN: None     EISSN: 18750443     Source Type: Journal    
DOI: 10.2174/1875044301003010040     Document Type: Article

References (95)

1. Dufour P, Dufour S, Castonguay A, McCarthy N, De Koninck Y. Two-photon laser scanning fluorescence microscopy for functional cellular imaging: advantages and challenges or one photon is good... but two is better! Med Sci (Paris) 2006; 22: 837-844.
2. Tokuko H. Live cell imaging: approaches for studying protein dynamics in living cells. Cell Struct Funct 2002; 27: 333-4.
3. Shaw SL. Imaging the live plant cell. Plant J 2006; 45: 573-598.
4. Tsien R.Y. The green fluorescent protein. Annu Rev Biochem 1998; 67: 509-544.
5. Shimomura O. The discovery of aequorin and green fluorescence protein. J Microsc 2005; 217: 3-15.
6. Amos B. Lessons from the history of light microscopy. Nat Cell Biol 2000; 2: E151-2.
7. Hell SW. Toward fluorescence nanoscopy. Nat Biotechnol 2003; 21: 1347-1355.
8. Porter G. Some reflections on the work of Theodor Förster. Naturwissenschaften 1976; 63: 207-211.
9. Thomas MJ, Diane SL, Elizabeth A. Fluorescence resonance energy transfer (FRET) and fluorescence lifetime imaging micros-copy (FLIM). From cells to proteins: imaging nature across dimensions: Springer: Netherlands 2006.
10. Mao S, Benninger RK, Yan Y, et al. Optical lock-in detection of FRET using synthetic and genetically encoded optical switches. Biophys J 2008; 94: 4515-4524.
11. Treanor B, Lanigan PM, Suhling K, et al. Imaging fluorescence lifetime heterogeneity applied to GFP-tagged MHC protein at an immunological synapse. J Microsc 2005; 217: 36-43.
12. Braet F, Vermijlen D, Bossuyt V, De Zanger R, Wisse E. Early detection of cytotoxic events between hepatic natural killer cells and colon carcinoma cells as probed with the atomic force microscope. Ultramicroscopy 2001; 89: 265-273.
13. Schaus SS, Henderson ER. Cell viability and probe-cell membrane interactions of XR1 glial cells imaged by atomic force microscopy. Biophys J 1997; 73: 1205-1214.
14. Cappella B, Baschieri P, Frediani C, Miccoli P, Ascoli C. Force- distance curves by AFM. IEEE Eng Med Biol Mag 1997; 16: 58-65.
15. Mahaffy RE, Shih CK, MacKintosh FC, Käs J. Scanning Probe-Based Frequency-Dependent Microrheology of Polymer Gels and Biological Cells. Phys Rev Lett 2000; 85: 880-3.
16. Shen Y, Sun JL, Zhang A, Hu J, Xu LX. A new image correction method for live cell atomic force microscopy. Phys Med Biol 2007; 52: 2185-2196.
17. Gorelik J, Zhang Y, Shevchuk AI, et al. The use of scanning ion conductance microscopy to image A6 cells. Mol Cell Endocrinol 2004; 217: 101-8.
18. Zhang Y, Gorelik J, Sanchez D, et al. Scanning ion conductance microscopy reveals how a functional renal epithelial monolayer maintains its integrity. Kidney Int 2005; 68: 1071-7.
19. Novak P, Li C, Shevchuk AI, et al. Nanoscale live-cell imaging using hopping probe ion conductance microscopy. Nat Methods 2009; 6: 279-281.
20. Amos WB, White JG. How the Confocal Laser Scanning Micro- scope entered Biological Research. Biol Cell 2003; 95: 335-342.
21. Shevchuk AI, Hobson P, Lab MJ, Klenerman D, Krauzewicz N, Korchev YE. Endocytic pathways: combined scanning ion conductance and surface confocal microscopy study. Pflugers Arch 2008; 456: 227-235.
22. Diaspro A. Two-photon excitation microscopy. IEEE Eng Med Biol 1999; 18: 16-99.
23. Pennisi E. Biochemistry: photons add up to better microscopy. Science 1997; 275: 480-1.
24. Zipfel WR, Williams RM, Webb WW. Nonlinear magic: multiphoton microscopy in the biosciences. Nat Biotechnol 2003; 21: 1369-1377.
25. Girkin JM. Optical physics enables advances in multiphoton imaging. J Phys D: Appl Phys 2003; 36: R250-R8.
26. Schafer-Hales KJ, Belfield KD, Yao S, Frederiksen PK, Hales JM, Kolattukudy PE. Fluorene-based fluorescent probes with high two-photon action cross-sections for biological multiphoton imaging applications. J Biomed Opt 2005; 10: 051402.
27. Chip-man Technologies Ltd. Available from: http://www.chipm-antech.com
28. Sislab Supply Innovative Solutions for Life Science Research. Available from: http: //nuke.sislab/Home
29. Melles Griot. Available from: http: //www.mellesgriot.com
30. Narkilahti S, Rajala K, Pihlajamäki H, Suuronen R, Hovatta O, Skottman H. Monitoring and analysis of dynamic growth of human embryonic stem cells: comparison of automated instrumentation and conventional culturing methods. Biomed Eng Online 2007; 6: 11.
31. Giepmans BN, Adams SR, Ellisman MH, Tsien RY. The fluores- cent toolbox for assessing protein location and function. Science 2006; 312: 217-224.
32. Tsien RY. Building and breeding molecules to spy on cells and tumors. FEBS Lett 2005; 579: 927-932.
33. Chen I, Ting AY. Site-specific labeling of proteins with small molecules in live cells. Curr Opin Biotechnol 2005; 16: 35-40.
34. Alivisators P. The use of nanocrystals in biological detection. Nat Biotechnol 2004; 22: 47-52.
35. Dabbousi BO, Rodriguez-Viejo J, Mikulec FV, et al. (CdSe)ZnS Core Shell Quantum Dots: Synthesis and Characterization of a Size Series of Highly Luminescent Nanocrystallites. J Phys Chem B 1997; 101: 9463-9475.
36. Pons T, Uyeda HT, Medintz IL, Mattoussi H. Hydrodynamic dimensions, electrophoretic mobility, and stability of hydrophilic quantum dots. J Phys Chem B 2006; 110: 20308-20316.
37. Packard BZ, Artym VV, Komoriya A, Yamada KM. Direct visualization of protease activity on cells migrating in three-dimensions. Matrix Biol 2009; 28: 3-10.
38. Blum G, Mullins SR, Keren K, et al. Dynamic imaging of protease activity with fluorescently quenched activity-based probes. Nat Chem Biol 2005; 1: 203-209.
39. Suhling K, Siegel J, Phillips D, et al. Imaging the environment of green fluorescent protein. Biophys J 2002; 83: 3589-3595.
40. Pick H, Jankevics H, Vogel H. Distribution plasticity of the human estrogen receptor alpha in live cells: distinct imaging of consecutively expressed receptors. J Mol Biol 2007; 374: 1213-1223.
41. Misra P, Lebeche D, Ly H, et al. Quantitation of CXCR4 expression in myocardial infarction using 99mTc-labeled SDF-1alpha. J Nucl Med 2008; 49: 963-969.
42. Bannai H, Lévi S, Schweizer C, Dahan M, Triller A. Imaging the lateral diffusion of membrane molecules with quantum dots. Nat Protoc 2006; 1: 2628-2634.
43. Rajan SS, Liu HY, Vu TQ. Ligand-bound quantum dot probes for studying the molecular scale dynamics of receptor endocytic trafficking in live cells. ACS Nano 2008; 2: 1153-1166.
44. Treiser MD, Liu E, Dubin RA, Sung HJ, Kohn J, Moghe PV. Profiling cell-biomaterial interactions via cell-based fluororeporter imaging. Biotechniques 2007; 43: 361-368.
45. Myers KR, Lo KW, Lye RJ, et al. Intermediate chain subunit as a probe for cytoplasmic dynein function: biochemical analyses and live cell imaging in PC12 cells. J Neurosci Res 2007; 85: 2640-2647.
46. Iliev AI, Wouters FS. Application of simple photobleaching microscopy techniques for the determination of the balance between anterograde and retrograde axonal transport. J Neurosci Methods 2007; 161: 39-46.
47. Gangadhar NM, Stockwell BR. Chemical genetic approaches to probing cell death. Curr Opin Chem Biol 2006; 11: 83-87.
48. Pham W, Pantazopoulos P, Moore A. Imaging farnesyl protein transferase using a topologically activated probe. J Am Chem Soc 2006; 128: 11736-11737.
49. Maxwell D, Chang Q, Zhang X, Barnett EM, Piwnica-Worms D. An improved cell-penetrating, caspase-activatable, near-infrared fluorescent Peptide for apoptosis imaging. Bioconjug Chem 2009; 20: 702-709.
50. Kozloff KM, Quinti L, Patntirapong S, et al. Non-invasive optical detection of cathepsin K-mediated fluorescence reveals osteoclast activity in vitro and in vivo. Bone 2009; 44: 190-198.
51. Overly CC, Lee KD, Berthiaume E, Hollenbeck PJ. Quantitative measurement of intraorganelle pH in the endosomal-lysosomal pathway in neurons by using ratiometric imaging with pyranine. Proc Natl Acad Sci USA 1995; 92: 3156-3160.
52. Diwu Z, Chen CS, Zhang C, Klaubert DH, Haugland RP. A novel acidotropic pH indicator and its potential application in labeling acidic organelles of live cells. Chem Biol 1999; 6: 411-418.
53. Moreno RD, Ramalho-Santos J, Chan EK, Wessel GM, Schatten G. The Golgi apparatus segregates from the lysosomal/acrosomal vesicle during rhesus spermiogenesis: structural alterations. Dev Biol 2000; 219: 334-349.
54. Reers M, Smith TW, Chen LB. J-aggregate formation of a carbo- cyanine as a quantitative fluorescent indicator of membrane potential. Biochemistry 1991; 30: 4480-4486.
55. Jones VC, McKeown L, Verkhratsky A, Jones OT. LV-pIN-KDEL: a novel lentiviral vector demonstrates the morphology, dynamics and continuity of the endoplasmic reticulum in live neurones. BMC Neurosci 2008; 9: 10.
56. Chen TS, Wang XP, Sun L, Wang LX, Xing D, Mok M. Taxol induces caspase-independent cytoplasmic vacuolization and cell death through endoplasmic reticulum (ER) swelling in ASTC-a-1 cells. Cancer Lett 2008; 270: 164-172.
57. Giorgione J, Clarke M. Heterogeneous modes of uptake for latex beads revealed through live cell imaging of phagocytes expressing a probe for phosphatidylinositol-(3,4,5)-trisphosphate and phos- phatidylinositol-(3,4)-bisphosphate. Cell Motil Cytoskeleton 2008; 65: 721-733.
58. Mhlanga MM, Tyagi S. Using tRNA-linked molecular beacons to image cytoplasmic mRNAs in live cells. Nat Protoc 2006; 1: 1392-1398.
59. Sando S, Abe H, Kool ET. Quenched auto-ligating DNAs: multicolor identification of nucleic acids at single nucleotide resolution. J Am Chem Soc 2004; 126: 1081-7.
60. Smith PJ, Blunt N, Wiltshire M, et al. Characteristics of a novel deep red/infrared fluorescent cell-permeant DNA probe, DRAQ5, in intact human cells analyzed by flow cytometry, confocal and multiphoton microscopy. Cytometry 2000; 40: 280-291.
61. Miller GP, Silverman AP, Kool ET. New, stronger nucleophiles for nucleic acid-templated chemistry: synthesis and application in fluo- rescence detection of cellular RNA. Bioorg Med Chem 2008; 16: 56-64.
62. Lim MH, Xu D, Lippard SJ. Visualization of nitric oxide in living cells by a copper-based fluorescent probe. Nat Chem Biol 2006; 2: 375-380.
63. Khatchadourian A, Krumova K, Boridy S, Ngo AT, Maysinger D, Cosa G. Molecular imaging of lipid peroxyl radicals in living cells with a BODIPY-alpha-tocopherol adduct. Biochemistry 2009; [Epub ahead of print].
64. Srikun D, Miller EW, Domaille DW, Chang CJ. An ICT-based approach to ratiometric fluorescence imaging of hydrogen peroxide produced in living cells. J Am Chem Soc 2008; 130: 4596-7.
65. Gasbarrini A, Pasini P, Nardo B, et al. Chemiluminescent real time imaging of post-ischemic oxygen free radicals formation in livers isolated from young and old rats. Free Radic Biol Med 1998; 24: 211-6.
66. Kwok V, Vachon E, Downey GP. Use of fluorescent probes to detect lipid signaling intermediates in macrophages. Methods Mol Biol 2009; 531: 301-328.
67. Hölttä-Vuori M, Uronen RL, Repakova J, et al. BODIPY- cholesterol: a new tool to visualize sterol trafficking in living cells and organisms. Traffic 2008; 9: 1839-1849.
68. Hebbar S, Lee E, Manna M, et al. A fluorescent sphingolipid binding domain peptide probe interacts with sphingolipids and cholesterol-dependent raft domains. J Lipid Res 2008; 49: 1077-1089.
69. Soh N, Ariyoshi T, Fukaminato T, Nakajima H, Nakano K, Imato T. Swallow-tailed perylene derivative: a new tool for fluorescent imaging of lipid hydroperoxides. Org Biomol Chem 2007; 5: 3762-8.
70. Nishimura SY, Lord SJ, Klein LO, et al. Diffusion of lipid-like single-molecule fluorophores in the cell membrane. J Phys Chem B 2006; 110: 8151-7.
71. Weng J, Song X, Li L, et al. Highly luminescent CdTe quantum dots prepared in aqueous phase as an alternative fluorescent probe for cell imaging. Talanta 2006; 70: 397-402.
72. Chang CF, Chen CY, Chang FH, et al. Cell tracking and detection of molecular expression in live cells using lipid-enclosed CdSe quantum dots as contrast agents for epi-third harmonic generation microscopy. Opt Express 2008; 16: 9534-9548.
73. Muylle FA, Adriaensen D, De Coen W, Timmermans JP, Blust R. Tracing of labile zinc in live fish hepatocytes using FluoZin-3. Biometals 2006; 19: 437-450.
74. Budde T MA, White JA, Kay AR. Imaging free zinc in synaptic terminals in live hippocampal slices. Neuroscience 1997; 79: 347-358.
75. Miller EW, Zeng L, Domaille DW, Chang CJ. Preparation and use of Coppersensor-1, a synthetic fluorophore for live-cell copper imaging. Nat Protoc 2006; 1: 824-7.
76. Kim HM, Yang PR, Seo MS, et al. Magnesium ion selective two- photon fluorescent probe based on a benzo[h]chromene derivative for in vivo imaging. J Org Chem 2007; 72: 2088-2096.
77. Santangelo PJ, Lifland AW, Curt P, et al. Single molecule-sensitive probes for imaging RNA in live cells. Nat Methods 2009; 6: 347-9.
78. Crow MJ, Grant G, Provenzale JM, Wax A. Molecular imaging and quantitative measurement of epidermal growth factor receptor expression in live cancer cells using immunolabeled gold nanoparticles. Am J Roentgenol 2009; 192: 1021-8.
79. Curry AC, Crow M, Wax A. Molecular imaging of epidermal growth factor receptor in live cells with refractive index sensitivity using dark-field microspectroscopy and immunotargeted nanoparticles. J Biomed Opt 2008; 13: 014022.
80. Loo C, Hirsch L, Lee MH, et al. Gold nanoshell bioconjugates for molecular imaging in living cells. Opt Lett 2005; 30: 1012-4.
81. Xiao W, Yao N, Peng L, Liu R, Lam KS. Near-infrared optical imaging in glioblastoma xenograft with ligand-targeting alpha 3 integrin. Eur J Nucl Med Mol Imaging 2009; 36: 94-103.
82. Gounaris E, Tung CH, Restaino C, et al. Live imaging of cysteinecathepsin activity reveals dynamics of focal inflammation, angiogenesis, and polyp growth. PLoS ONE 2008; 3: e2916.
83. El-Sayed I, Huang X, Macheret F, Humstoe JO, Kramer R, El-Sayed M. Effect of plasmonic gold nanoparticles on benign and malignant cellular autofluorescence: a novel probe for fluorescence based detection of cancer. Technol Cancer Res Treat 2007; 6: 403-412.
84. Huh YM, Jun YW, Song HT, et al. In vivo magnetic resonance detection of cancer by using multifunctional magnetic nanocrystals. J Am Chem Soc 2005; 127: 12387-12391.
85. Shimizu K, Del Amo Y, Brzezinski MA, Stucky GD, Morse DE. A novel fluorescent silica tracer for biological silicification studies. Chem Biol 2001; 8: 1051-1060.
86. Alivisators P. Semiconductor clusters, nanocrystals, and quantum dots. Science 1996; 271: 933-7.
87. Bruchez M, Moronne M, Gin P, Weiss S, Alivisatos AP. Semiconductor nanocrystals as fluorescent biological labels. Science 1998; 281: 2013-6.
88. Chan W, Maxwell DJ, Gao XH, Bailey RE, Han MY, Nie SM. Luminescent quantum dots for multiplexed biological detection and imaging. Curr Opin Biotechnol 2002; 13: 40-6.
89. Chan W, Nie SM. Quantum dot bioconjugates for ultrasensitive nonisotopic detection. Science 1998; 281: 2016-8.
90. Gao XH, Cui YY, Levenson RM, Chung L, Nie SM. In vivo cancer targeting and imaging with semiconductor quantum dots. Nat Bio-technol 2004; 22: 969-976.
91. Rhyner MN, Smith AM, Gao X, Mao H, Yang L, Nie S. Quantum dots and targeted nanoparticle probes for in vivo tumor imaging. Fundan Biomed Technol 2008; 102: 413-425.
92. Knight VB, Serrano EE. Tissue and species differences in the application of quantum dots as probes for biomolecular targets in the inner ear and kidney. IEEE Trans Nanobiosci 2006; 5: 251-262.
93. Patterson GH. Fluorescent proteins for cell biology. Methods Mol Biol 2007; 411: 47-80.
94. Awais M, Sato M, Umezawa Y. Optical probes to identify the glucocorticoid receptor ligands in living cells. Steroids 2007; 72: 949-954.
95. Tomasulo M, Yildiz I, Raymo FM. pH-sensitive quantum dots. J Phys Chem B 2006; 110: 3853-5.