Halorussus rarus gen. nov., sp. nov., a new member of the family Halobacteriaceae isolated from a marine solar saltern

Extremophiles

Volumn 14, Issue 6, 2010, Pages 493-499

  Cui, Heng Lin ^a,b   Gao, Xia ^a   Yang, Xin ^a   Xu, Xue Wei ^c  

^a JIANGSU UNIVERSITY   (China)

^b INSTITUTE OF MICROBIOLOGY   (China)

^c Ministry of Natural Resources of the People's Republic of China   (China)

Author keywords

Halophilic archaeon; Halorussus rarus gen. nov., sp. nov.; Marine solar saltern

Indexed keywords

ARCHAEAL DNA; PIGMENT; RNA 16S; SODIUM CHLORIDE;

ANIMAL; ARTICLE; BIOTA; CHEMISTRY; CHINA; DNA BASE COMPOSITION; GENETICS; GENOTYPE; HALOBACTERIALES; HYBRIDIZATION; ISOLATION AND PURIFICATION; METABOLISM; PHENOTYPE; PHYLOGENY; PHYSIOLOGY; SALT TOLERANCE;

ANIMALS; BASE COMPOSITION; BIOTA; CHINA; DNA, ARCHAEAL; GENOTYPE; HALOBACTERIACEAE; HYBRIDIZATION, GENETIC; PHENOTYPE; PHYLOGENY; PIGMENTS, BIOLOGICAL; RNA, RIBOSOMAL, 16S; SALT-TOLERANCE; SODIUM CHLORIDE;

ARCHAEA; HALOBACTERIACEAE; HALOBACTERIUM;

EID: 78149499157     PISSN: 14310651     EISSN: 14334909     Source Type: Journal    
DOI: 10.1007/s00792-010-0329-0     Document Type: Article

References (36)

1. Antón J, Oren A, Benlloch S, Rodríguez-Valera F, Amann R, Rosselló-Mora R (2002) Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. Int J Syst Evol Microbiol 52: 485-491.
2. Antunes A, Taborda M, Huber R, Moissl C, Nobre MF, da Costa MS (2008) Halorhabdus tiamatea sp. nov., a non-pigmented, extremely halophilic archaeon from a deep-sea, hypersaline anoxic basin of the Red Sea, and emended description of the genus Halorhabdus. Int J Syst Evol Microbiol 58: 215-220.
3. Castillo AM, Gutiérrez MC, Kamekura M, Ma YH, Cowan DA, Jones BE, Grant WD, Ventosa A (2006) Halovivax asiaticus gen. nov., sp. nov., a novel extremely halophilic archaeon isolated from Inner Mongolia, China. Int J Syst Evol Microbiol 56: 765-770.
4. Chun J, Lee JH, Jung Y, Kim M, Kim S, Kim BK, Lim YW (2007) EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57: 2259-2261.
5. Cui HL, Lin ZY, Dong Y, Zhou PJ, Liu SJ (2007) Halorubrum litoreum sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57: 2204-2206.
6. Cui HL, Zhou PJ, Oren A, Liu SJ (2009) Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13: 31-37.
7. Cui HL, Sun FF, Gao X, Dong Y, Xu XW, Zhou YG, Liu HC, Oren A, Zhou PJ (2010) Haladaptatus litoreus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haladaptatus. Int J Syst Evol Microbiol 60: 1085-1089.
8. De Ley J, Cattoir H, Reynaerts A (1970) The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12: 133-142.
9. Dussault HP (1955) An improved technique for staining red halophilic bacteria. J Bacteriol 70: 484-485.
10. Euzéby J (2010) Notification that new names and new combinations have appeared in volume 60, part 5, of the IJSEM. Int J Syst Evol Microbiol 60: 1715-1716.
11. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17: 368-376.
12. Fitch WM (1971) Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20: 406-416.
13. Gonzalez C, Gutierrez C, Ramirez C (1978) Halobacterium vallismortis sp. nov. an amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24: 710-715.
14. Gutiérrez C, González C (1972) Method for simultaneous detection of proteinase and esterase activities in extremely halophilic bacteria. Appl Microbiol 24: 516-517.
15. Gutiérrez MC, Castillo AM, Kamekura M, Ventosa A (2008) Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake. Int J Syst Evol Microbiol 58: 2880-2884.
16. Huß VAR, Festl H, Schleifer KH (1983) Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4: 184-192.
17. Kates M (1986) Techniques of lipidology, 2nd edn. Elsevier, Amsterdam, pp 106-107, 241-246.
18. Kumar S, Dudley J, Nei M, Tamura K (2008) MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings Bioinf 9: 299-306.
19. McDade JJ, Weaver RH (1959) Rapid methods for the detection of gelatin hydrolysis. J Bacteriol 77: 60-64.
20. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Evol Bacteriol 39: 159-167.
21. Namwong S, Tanasupawat S, Visessanguan W, Kudo T, Itoh T (2007) Halococcus thailandensis sp. nov., from fish sauce in Thailand. Int J Syst Evol Microbiol 57: 2199-2203.
22. Ng WL, Yang CF, Halladay JT, Arora P, DasSarma S (1995) Protocol 25: isolation of genomic and plasmid DNAs from Halobacterium halobium. In: DasSarma S, Fleischmann EM (eds) Archaea: a laboratory manual: halophiles. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, pp 179-180.
23. Oren A (2006) The order Halobacteriales. In: Dworkin M, Falkow S, Rosenberg E, Schleifer KH, Stackebrandt E (eds) The prokaryotes, vol 3, 3rd edn. Springer, New York, pp 113-164.
24. Oren A, Ventosa A, Grant WD (1997) Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47: 233-238.
25. Oren A, Arahal DR, Ventosa A (2009) Emended descriptions of genera of the family Halobacteriaceae. Int J Syst Evol Microbiol 59: 637-642.
26. Purdy KJ, Cresswell-Maynard TD, Nedwell DB, McGenity TJ, Grant WD, Timmis KN, Embley TM (2004) Isolation of haloarchaea that grow at low salinities. Environ Microbiol 6: 591-595.
27. Roh SW, Nam YD, Chang HW, Sung Y, Kim KH, Lee HJ, Oh HM, Bae JW (2007) Halalkalicoccus jeotgali sp. nov., a halophilic archaeon from shrimp jeotgal, a traditional Korean fermented seafood. Int J Syst Evol Microbiol 57: 2296-2298.
28. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
29. Savage KN, Krumholz LR, Oren A, Elshahed MS (2007) Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 57: 19-24.
30. Savage KN, Krumholz LR, Oren A, Elshahed MS (2008) Halosarcina pallida gen. nov., sp. nov., a halophilic archaeon from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 58: 856-860.
31. Stackebrandt E, Goebel BM (1994) Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849.
32. Wang QF, Li W, Yang H, Liu YL, Cao HH, Dornmayr-Phaffenhuemer M, Stan-Lotter H, Guo GQ (2007) Halococcus qingdaonensis sp. nov., a halophilic archaeon isolated from a crude sea-salt sample. Int J Syst Evol Microbiol 57: 600-604.
33. Xin H, Itoh T, Zhou P, Suzuki K, Kamekura M, Nakase T (2000) Natrinema versiforme sp. nov., an extremely halophilic archaeon from Aibi salt lake, Xinjiang, China. Int J Syst Evol Microbiol 50: 1297-1303.
34. Xu Y, Zhou P, Tian X (1999) Characterization of two novel haloalkaliphilic archaea Natronorubrum bangense gen. nov., sp. nov. and Natronorubrum tibetense gen. nov., sp. nov. Int J Syst Bacteriol 49: 261-266.
35. Xu XW, Wu YH, Wang CS, Oren A, Zhou PJ, Wu M (2007) Haloferax larsenii sp. nov., an extremely halophilic archaeon from a solar saltern. Int J Syst Evol Microbiol 57: 717-720.
36. Xue YF, Fan HP, Ventosa A, Grant WD, Jones BE, Cowan DA, Ma YH (2005) Halalkalicoccus tibetensis gen. nov., sp. nov., representing a novel genus of haloalkaliphilic archaea. Int J Syst Evol Microbiol 55: 2501-2505.