Haladaptatus litoreus sp. nov., an extremely halophilic archaeon from a marine solar saltern, and emended description of the genus Haladaptatus

International Journal of Systematic and Evolutionary Microbiology

Volumn 60, Issue 5, 2010, Pages 1085-1089

  Cui, Heng Lin ^a   Sun, Fang Fang ^a   Gao, Xia ^a   Dong, Ying ^a   Xu, E Wei ^b   Zhou, Yu Guang ^c   Liu, Hong Can ^c   Oren, Aharon ^d   Zhou, Pei Jin ^c  

^a JIANGSU UNIVERSITY   (China)

^b Ministry of Natural Resources of the People's Republic of China   (China)

^c INSTITUTE OF MICROBIOLOGY   (China)

^d HEBREW UNIVERSITY OF JERUSALEM   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CYTOSINE; GLYCEROL DERIVATIVE; GLYCOLIPID; GUANINE; MAGNESIUM; PHOSPHATIDYLGLYCEROL; PHOSPHATIDYLGLYCEROL PHOSPHATE METHYL ESTER; PHOSPHATIDYLGLYCEROL SULFATE; RNA 16S; SODIUM CHLORIDE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM; BACTERIUM ISOLATION; CHROMATOGRAPHY; CONTROLLED STUDY; DNA BASE COMPOSITION; DNA DNA HYBRIDIZATION; GENUS; HALADAPTATUS LITOREUS; HALADAPTATUS PAUCIHALOPHILUS; HALOFERAX VOLCANII; HALOPHILIC ARCHAEON; HALOPLANUS NATANS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MARINE SOLAR SALTERN; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; POND; PRIORITY JOURNAL; RNA SEQUENCE; SPECIES; TEMPERATURE;

BASE COMPOSITION; CHINA; DNA, ARCHAEAL; DNA, RIBOSOMAL; GENES, RRNA; GEOLOGIC SEDIMENTS; HALOBACTERIACEAE; LIPIDS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SPECIES SPECIFICITY; TEMPERATURE;

ARCHAEA;

EID: 77952708008     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.015933-0     Document Type: Article

References (22)

1. Bardavid, R. E., Mana, L. & Oren, A. (2007). Haloplanus natans gen. nov., sp. nov., an extremely halophilic, gas-vacuolate archaeon isolated from Dead Sea-Red Sea water mixtures in experimental outdoor ponds. Int J Syst Evol Microbiol 57, 780-783. (Pubitemid 46711959)
2. Chun, J., Lee, J.-H., Jung, Y., Kim, M., Kim, S., Kim, B. K. & Lim, Y.-W. (2007). EzTaxon: a web-based tool for the identification of prokaryotes based on 16S ribosomal RNA gene sequences. Int J Syst Evol Microbiol 57, 2259-2261. (Pubitemid 350031697)
3. Cui, H.-L., Zhou, P.-J., Oren, A. & Liu, S.-J. (2009). Intraspecific polymorphism of 16S rRNA genes in two halophilic archaeal genera, Haloarcula and Halomicrobium. Extremophiles 13, 31-37.
4. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
5. Dussault, H. P. (1955). An improved technique for staining red halophilic bacteria. J Bacteriol 70, 484-485.
6. Dyall-Smith, M. L. (2008). The Halohandbook: Protocols for haloarchaeal genetics. http://www.haloarchaea.com/resources/halohandbook/.
7. Fitch, W. M. (1971). Toward defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
8. Gonzalez, C., Gutierrez, C. & Ramirez, C. (1978). Halobacterium vallismortis sp. nov. An amylolytic and carbohydrate-metabolizing, extremely halophilic bacterium. Can J Microbiol 24, 710-715. (Pubitemid 8380304)
9. Gutiérrez, C. & González, C. (1972). Method for simultaneous detection of proteinase and esterase in extremely halophilic bacteria. Appl Microbiol 24, 516-517.
10. Gutiérrez, M. C., Castillo, A. M., Kamekura, M. & Ventosa, A. (2008). Haloterrigena salina sp. nov., an extremely halophilic archaeon isolated from a salt lake. Int J Syst Evol Microbiol 58, 2880-2884. (Pubitemid 46306470)
11. Huß, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192. (Pubitemid 13066307)
12. Kates, M. (1986). In Techniques of Lipidology, 2nd rev. edn, pp. 106-107, 187-188 and 251-254. Amsterdam: Elsevier.
13. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G+C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
14. Ng, W. L., Yang, C. F., Halladay, J. T., Arora, A. & DasSarma, S. (1995). Protocol 25. Isolation of genomic and plasmid DNAs from Halobacterium halobium. In Archaea: a Laboratory Manual: Halophiles, pp. 179-180. Edited by S. DasSarma & E. M. Fleischmann. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
15. Oren, A. (2006). The order Halobacteriales. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 113-164. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K.-H. Schleifer & E. Stackebrandt. New York: Springer.
16. Oren, A., Ventosa, A. & Grant, W. D. (1997). Proposed minimal standards for description of new taxa in the order Halobacteriales. Int J Syst Bacteriol 47, 233-238. (Pubitemid 27027255)
17. Purdy, K. J., Cresswell-Maynard, T. D., Nedwell, D. B., McGenity, T. J., Grant, W. D., Timmis, K. N. & Embley, T. M. (2004). Isolation of haloarchaea that grow at low salinities. Environ Microbiol 6, 591-595.
18. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
19. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2007). Haladaptatus paucihalophilus gen. nov., sp. nov., a halophilic archaeon isolated from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 57, 19-24. (Pubitemid 46152724)
20. Savage, K. N., Krumholz, L. R., Oren, A. & Elshahed, M. S. (2008). Halosarcina pallida gen. nov., sp. nov., a halophilic archaeon from a low-salt, sulfide-rich spring. Int J Syst Evol Microbiol 58, 856-860.
21. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849. (Pubitemid 24315169)
22. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007). MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596-1599. (Pubitemid 47236692)