메뉴 건너뛰기




Volumn 5, Issue 10, 2010, Pages

Machine learning methods for prediction of CDK-inhibitors

Author keywords

[No Author keywords available]

Indexed keywords

CYCLIN DEPENDENT KINASE INHIBITOR; CYCLIN DEPENDENT KINASE; PROTEIN KINASE INHIBITOR;

EID: 78149442889     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0013357     Document Type: Article
Times cited : (11)

References (40)
  • 1
    • 54549101258 scopus 로고    scopus 로고
    • Cyclin-dependent kinases and cell-cycle transitions: Does one fit all?
    • Hochegger H, Takeda S, Hunt T (2008) Cyclin-dependent kinases and cell-cycle transitions: does one fit all? Nat Rev Mol Cell Biol 9: 910-916.
    • (2008) Nat Rev Mol Cell Biol , vol.9 , pp. 910-916
    • Hochegger, H.1    Takeda, S.2    Hunt, T.3
  • 3
    • 38849187293 scopus 로고    scopus 로고
    • CDK Inhibitors: Cell Cycle Regulators and Beyond
    • Besson A, Dowdy SF, Roberts JM (2008) CDK Inhibitors: Cell Cycle Regulators and Beyond. Developmental Cell 14: 159-169.
    • (2008) Developmental Cell , vol.14 , pp. 159-169
    • Besson, A.1    Dowdy, S.F.2    Roberts, J.M.3
  • 4
    • 42549155417 scopus 로고    scopus 로고
    • CDKN1C/p57kip2 is a candidate tumor suppressor gene in human breast cancer
    • Larson P, Schlechter B, King C-L, Yang Q, Glass C, et al. (2008) CDKN1C/p57kip2 is a candidate tumor suppressor gene in human breast cancer. BMC Cancer 8: 68.
    • (2008) BMC Cancer , vol.8 , pp. 68
    • Larson, P.1    Schlechter, B.2    King, C.-L.3    Yang, Q.4    Glass, C.5
  • 5
    • 42549152342 scopus 로고    scopus 로고
    • Expression and clinical implication of p27 and p57 in cutaneous squamous cell carcinoma and Bowen's disease
    • Liang H, Li J, Tian D (2008) Expression and clinical implication of p27 and p57 in cutaneous squamous cell carcinoma and Bowen's disease. The Chinese- German Journal of Clinical Oncology 7: 176-178.
    • (2008) The Chinese- German Journal of Clinical Oncology , vol.7 , pp. 176-178
    • Liang, H.1    Li, J.2    Tian, D.3
  • 6
    • 0028988159 scopus 로고
    • p57KIP2, a structurally distinct member of the p21CIP1 Cdk inhibitor family, is a candidate tumor suppressor gene
    • Matsuoka S, Edwards MC, Bai C, Parker S, Zhang P, et al. (1995) p57KIP2, a structurally distinct member of the p21CIP1 Cdk inhibitor family, is a candidate tumor suppressor gene. Genes & Development 9: 650-662.
    • (1995) Genes & Development , vol.9 , pp. 650-662
    • Matsuoka, S.1    Edwards, M.C.2    Bai, C.3    Parker, S.4    Zhang, P.5
  • 7
    • 7944234858 scopus 로고    scopus 로고
    • Tumor suppressor functions for the Cdk inhibitor p21 in the mouse colon
    • Poole AJ, Heap D, Carroll RE, Tyner AL (2004) Tumor suppressor functions for the Cdk inhibitor p21 in the mouse colon. Oncogene 23: 8128-8134.
    • (2004) Oncogene , vol.23 , pp. 8128-8134
    • Poole, A.J.1    Heap, D.2    Carroll, R.E.3    Tyner, A.L.4
  • 8
    • 66149129256 scopus 로고    scopus 로고
    • Rare Germline Mutations in Cyclin- Dependent Kinase Inhibitor Genes in Multiple Endocrine Neoplasia Type 1 and Related States
    • Agarwal SK, Mateo CM, Marx SJ (2009) Rare Germline Mutations in Cyclin- Dependent Kinase Inhibitor Genes in Multiple Endocrine Neoplasia Type 1 and Related States. J Clin Endocrinol Metab 94: 1826-1834.
    • (2009) J Clin Endocrinol Metab , vol.94 , pp. 1826-1834
    • Agarwal, S.K.1    Mateo, C.M.2    Marx, S.J.3
  • 9
    • 45549083114 scopus 로고    scopus 로고
    • Down-regulation of p57Kip2 Induces Prostate Cancer in the Mouse
    • Jin RJ, Lho Y, Wang Y, Ao M, Revelo MP, et al. (2008) Down-regulation of p57Kip2 Induces Prostate Cancer in the Mouse. Cancer Res 68: 3601-3608.
    • (2008) Cancer Res , vol.68 , pp. 3601-3608
    • Jin, R.J.1    Lho, Y.2    Wang, Y.3    Ao, M.4    Revelo, M.P.5
  • 10
    • 0036139280 scopus 로고    scopus 로고
    • Intrinsic structural disorder and sequence features of the cell cycle inhibitor p57Kip2
    • Joshua NA, Kevin JL (2002) Intrinsic structural disorder and sequence features of the cell cycle inhibitor p57Kip2. Proteins: Structure, Function, and Genetics 46: 1-7.
    • (2002) Proteins: Structure, Function, and Genetics , vol.46 , pp. 1-7
    • Joshua, N.A.1    Kevin, J.L.2
  • 12
    • 0034926065 scopus 로고    scopus 로고
    • Overexpression of cdk Inhibitor p16INK4aby Adenovirus Vector Inhibits Cardiac Hypertrophy in vitro and in vivo: A Novel Strategy for the Gene Therapy of Cardiac Hypertrophy
    • Nozato T, Ito H, Watanabe M, Ono Y, Adachi S, et al. (2001) Overexpression of cdk Inhibitor p16INK4aby Adenovirus Vector Inhibits Cardiac Hypertrophy in vitro and in vivo: a Novel Strategy for the Gene Therapy of Cardiac Hypertrophy. Journal of Molecular and Cellular Cardiology 33: 1493-1504.
    • (2001) Journal of Molecular and Cellular Cardiology , vol.33 , pp. 1493-1504
    • Nozato, T.1    Ito, H.2    Watanabe, M.3    Ono, Y.4    Adachi, S.5
  • 13
    • 0033760789 scopus 로고    scopus 로고
    • Inhibitors of Cyclin-Dependent Kinases as Anti- Cancer Therapeutics
    • Fischer PM, Lane DP (2000) Inhibitors of Cyclin-Dependent Kinases as Anti- Cancer Therapeutics. Current Medicinal Chemistry 7: 1213-1245.
    • (2000) Current Medicinal Chemistry , vol.7 , pp. 1213-1245
    • Fischer, P.M.1    Lane, D.P.2
  • 15
    • 52049097040 scopus 로고    scopus 로고
    • Progress in the evaluation of CDK inhibitors as anti-tumor agents
    • McInnes C (2008) Progress in the evaluation of CDK inhibitors as anti-tumor agents. Drug Discovery Today 13: 875-881.
    • (2008) Drug Discovery Today , vol.13 , pp. 875-881
    • McInnes, C.1
  • 18
    • 3342936476 scopus 로고    scopus 로고
    • Inhibitors of Leishmania mexicana CRK3 Cyclin-Dependent Kinase: Chemical Library Screen and Antileishmanial Activity
    • Grant KM, Dunion MH, Yardley V, Skaltsounis A-L, Marko D, et al. (2004) Inhibitors of Leishmania mexicana CRK3 Cyclin-Dependent Kinase: Chemical Library Screen and Antileishmanial Activity. Antimicrob Agents Chemother 48: 3033-3042.
    • (2004) Antimicrob Agents Chemother , vol.48 , pp. 3033-3042
    • Grant, K.M.1    Dunion, M.H.2    Yardley, V.3    Skaltsounis, A.-L.4    Marko, D.5
  • 20
    • 37749017645 scopus 로고    scopus 로고
    • The CDK inhibitors: Potential targets for therapeutic stem cell manipulations?
    • Boyer MJ, Cheng T (2007) The CDK inhibitors: potential targets for therapeutic stem cell manipulations? Gene Ther 15: 117-125.
    • (2007) Gene Ther , vol.15 , pp. 117-125
    • Boyer, M.J.1    Cheng, T.2
  • 21
    • 34547223720 scopus 로고    scopus 로고
    • INK4 proteins, a family of mammalian CDK inhibitors with novel biological functions
    • Cánepa ET, Scassa ME, Ceruti JM, Marazita MC, Carcagno AL, et al. (2007) INK4 proteins, a family of mammalian CDK inhibitors with novel biological functions. IUBMB Life 59: 419-426.
    • (2007) IUBMB Life , vol.59 , pp. 419-426
    • Cánepa, E.T.1    Scassa, M.E.2    Ceruti, J.M.3    Marazita, M.C.4    Carcagno, A.L.5
  • 22
    • 0032410285 scopus 로고    scopus 로고
    • Cip/Kip cyclin-dependent kinase inhibitors: Brakes of the cell cycle engine during development
    • Kei-ichi N, Keiko N (1998) Cip/Kip cyclin-dependent kinase inhibitors: brakes of the cell cycle engine during development. BioEssays 20: 1020-1029.
    • (1998) BioEssays , vol.20 , pp. 1020-1029
    • Kei-ichi, N.1    Keiko, N.2
  • 23
    • 33749527559 scopus 로고    scopus 로고
    • CDK Pho85 targets CDK inhibitor Sic1 to relieve yeast G1 checkpoint arrest after DNA damage
    • Wysocki R, Javaheri A, Kristjansdottir K, Sha F, Kron SJ (2006) CDK Pho85 targets CDK inhibitor Sic1 to relieve yeast G1 checkpoint arrest after DNA damage. Nat Struct Mol Biol 13: 908-914.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 908-914
    • Wysocki, R.1    Javaheri, A.2    Kristjansdottir, K.3    Sha, F.4    Kron, S.J.5
  • 24
    • 33845753933 scopus 로고    scopus 로고
    • SIAMESE, a Plant-Specific Cell Cycle Regulator, Controls Endoreplication Onset in Arabidopsis thaliana
    • Churchman ML, Brown ML, Kato N, Kirik V, Hulskamp M, et al. (2006) SIAMESE, a Plant-Specific Cell Cycle Regulator, Controls Endoreplication Onset in Arabidopsis thaliana. Plant Cell 18: 3145-3157.
    • (2006) Plant Cell , vol.18 , pp. 3145-3157
    • Churchman, M.L.1    Brown, M.L.2    Kato, N.3    Kirik, V.4    Hulskamp, M.5
  • 25
    • 49549114859 scopus 로고    scopus 로고
    • The plant CDK inhibitor NtKIS1a interferes with dedifferentiation, is specifically down regulated during development and interacts with a JAB1 homolog
    • Le Foll M, Blanchet S, Millan L, Mathieu C, Bergounioux C, et al. (2008) The plant CDK inhibitor NtKIS1a interferes with dedifferentiation, is specifically down regulated during development and interacts with a JAB1 homolog. Plant Science 175: 513-523.
    • (2008) Plant Science , vol.175 , pp. 513-523
    • Le Foll, M.1    Blanchet, S.2    Millan, L.3    Mathieu, C.4    Bergounioux, C.5
  • 27
    • 75649113326 scopus 로고    scopus 로고
    • LipocalinPred: A SVM-based method for prediction of lipocalins
    • Ramana J, Gupta D (2009) LipocalinPred: a SVM-based method for prediction of lipocalins. BMC Bioinformatics 10: 445.
    • (2009) BMC Bioinformatics , vol.10 , pp. 445
    • Ramana, J.1    Gupta, D.2
  • 31
    • 0027437850 scopus 로고
    • Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2
    • Gyuris J, Golemis E, Chertkov H, Brent R (1993) Cdi1, a human G1 and S phase protein phosphatase that associates with Cdk2. Cell 75: 791-803.
    • (1993) Cell , vol.75 , pp. 791-803
    • Gyuris, J.1    Golemis, E.2    Chertkov, H.3    Brent, R.4
  • 32
    • 0028970682 scopus 로고
    • Dephosphorylation of Cdk2 Thr160 by the Cyclin- Dependent Kinase-Interacting Phosphatase KAP in the Absence of Cyclin
    • Poon RYC, Hunter T (1995) Dephosphorylation of Cdk2 Thr160 by the Cyclin- Dependent Kinase-Interacting Phosphatase KAP in the Absence of Cyclin. Science 270: 90-93.
    • (1995) Science , vol.270 , pp. 90-93
    • Poon, R.Y.C.1    Hunter, T.2
  • 33
    • 0023890867 scopus 로고
    • Measuring the accuracy of diagnostic systems
    • Swets JA (1988) Measuring the accuracy of diagnostic systems. Science 240: 1285-1293.
    • (1988) Science , vol.240 , pp. 1285-1293
    • Swets, J.A.1
  • 35
    • 84879798456 scopus 로고    scopus 로고
    • Prediction of Cyclin- Dependent Kinase Phosphorylation Substrates
    • Chang EJ, Begum R, Chait BT, Gaasterland T (2007) Prediction of Cyclin- Dependent Kinase Phosphorylation Substrates. PLoS ONE 2: e656.
    • (2007) PLoS ONE , vol.2
    • Chang, E.J.1    Begum, R.2    Chait, B.T.3    Gaasterland, T.4
  • 36
    • 33745634395 scopus 로고    scopus 로고
    • Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
    • Li W, Godzik A (2006) Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics 22: 1658-1659.
    • (2006) Bioinformatics , vol.22 , pp. 1658-1659
    • Li, W.1    Godzik, A.2
  • 38
    • 0002714543 scopus 로고    scopus 로고
    • Making large-Scale SVM Learning Practical
    • In: Schölkopf B, Burges C, Smola A, eds, MIT-Press
    • Joachims T (1999) Making large-Scale SVM Learning Practical. In: Schölkopf B, Burges C, Smola A, eds. Advances in Kernel Methods - Support Vector Learning: MIT-Press. pp 169-184.
    • (1999) Advances in Kernel Methods - Support Vector Learning , pp. 169-184
    • Joachims, T.1
  • 40
    • 33646023117 scopus 로고    scopus 로고
    • An introduction to ROC analysis
    • Fawcett T (2006) An introduction to ROC analysis. Pattern Recogn Lett 27: 861-874.
    • (2006) Pattern Recogn Lett , vol.27 , pp. 861-874
    • Fawcett, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.