-
1
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson, A. F., Lindberg, M., Jakobsson, H., Bäckhed, F., Nyrén, P. & Engstrand, L. (2008). Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS ONE 3, e2836.
-
(2008)
PLoS ONE
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Bäckhed, F.4
Nyrén, P.5
Engstrand, L.6
-
2
-
-
15544369658
-
Host-bacterial mutualism in the human intestine
-
Bäckhed, F., Ley, R. E., Sonnenburg, J. L., Peterson, D. A. & Gordon, J. I. (2005). Host-bacterial mutualism in the human intestine. Science 307, 1915-1920.
-
(2005)
Science
, vol.307
, pp. 1915-1920
-
-
Bäckhed, F.1
Ley, R.E.2
Sonnenburg, J.L.3
Peterson, D.A.4
Gordon, J.I.5
-
3
-
-
23744446233
-
Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis
-
DOI 10.1128/AEM.71.8.4679-4689.2005
-
Ben-Amor, K., Heilig, H. G., Smidt, H., Vaughan, E. E., Abee, T. & de Vos, W. M. (2005). Genetic diversity of viable, injured, and dead fecal bacteria assessed by fluorescence-activated cell sorting and 16S rRNA gene analysis. Appl Environ Microbiol 71, 4679-4689. (Pubitemid 41129525)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.8
, pp. 4679-4689
-
-
Ben-Amor, K.1
Heilig, H.2
Smidt, H.3
Vaughan, E.E.4
Abee, T.5
De Vos, W.M.6
-
4
-
-
0030012342
-
High-density oligonucleotide arrays
-
Blanchard, A. P., Kaiser, R. J. & Hood, L. E. (1996). High-density oligonucleotide arrays. Biosens Bioelectron 11, 687-690.
-
(1996)
Biosens Bioelectron
, vol.11
, pp. 687-690
-
-
Blanchard, A.P.1
Kaiser, R.J.2
Hood, L.E.3
-
6
-
-
0344039180
-
On the partitioning of squared Euclidean distance and its application in cluster analysis
-
Carter, R. L., Morris, R. & Blashfield, R. K. (1989). On the partitioning of squared Euclidean distance and its application in cluster analysis. Psychometrika 54, 9-23.
-
(1989)
Psychometrika
, vol.54
, pp. 9-23
-
-
Carter, R.L.1
Morris, R.2
Blashfield, R.K.3
-
7
-
-
33644932943
-
Studies on the effect of system retention time on bacterial populations colonizing a three-stage continuous culture model of the human large gut using FISH techniques
-
Child, M. W., Kennedy, A., Walker, A. W., Bahrami, B., Macfarlane, S. & Macfarlane, G. T. (2006). Studies on the effect of system retention time on bacterial populations colonizing a three-stage continuous culture model of the human large gut using FISH techniques. FEMS Microbiol Ecol 55, 299-310.
-
(2006)
FEMS Microbiol Ecol
, vol.55
, pp. 299-310
-
-
Child, M.W.1
Kennedy, A.2
Walker, A.W.3
Bahrami, B.4
Macfarlane, S.5
Macfarlane, G.T.6
-
8
-
-
69249109724
-
Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine
-
Claesson, M. J., O'Sullivan, O., Wang, Q., Nikkilä, J., Marchesi, J. R., Smidt, H., de Vos, W. M., Ross, R. P. & O'Toole, P. W. (2009). Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine. PLoS ONE 4, e6669.
-
(2009)
PLoS ONE
, vol.4
-
-
Claesson, M.J.1
O'Sullivan, O.2
Wang, Q.3
Nikkilä, J.4
Marchesi, J.R.5
Smidt, H.6
De Vos, W.M.7
Ross, R.P.8
O'Toole, P.W.9
-
9
-
-
70350566110
-
The putative role of the intestinal microbiota in the irritable bowel syndrome
-
Collins, S. M., Denou, E., Verdu, E. F. & Bercik, P. (2009). The putative role of the intestinal microbiota in the irritable bowel syndrome. Dig Liver Dis 41, 850-853.
-
(2009)
Dig Liver Dis
, vol.41
, pp. 850-853
-
-
Collins, S.M.1
Denou, E.2
Verdu, E.F.3
Bercik, P.4
-
10
-
-
3342948690
-
The intestinal mucosa as a habitat of the gut microbiota and a rational target for probiotic functionality and safety
-
Derrien, M., Adawi, D., Ahrné, S., Jeppsson, B., Molin, G., Osman, N., Stsepetova, J., Vaughan, E. E., de Vos, W. M. & other authors (2004). The intestinal mucosa as a habitat of the gut microbiota and a rational target for probiotic functionality and safety. Microb Ecol Health Dis 16, 137-144.
-
(2004)
Microb Ecol Health Dis
, vol.16
, pp. 137-144
-
-
Derrien, M.1
Adawi, D.2
Ahrné, S.3
Jeppsson, B.4
Molin, G.5
Osman, N.6
Stsepetova, J.7
Vaughan, E.E.8
De Vos, W.M.9
-
11
-
-
31944450239
-
Beyond diversity: Functional microbiomics of the human colon
-
DOI 10.1016/j.tim.2005.12.007, PII S0966842X05003380
-
Egert, M., de Graaf, A. A., Smidt, H., de Vos, W. M. & Venema, K. (2006). Beyond diversity: functional microbiomics of the human colon. Trends Microbiol 14, 86-91. (Pubitemid 43190738)
-
(2006)
Trends in Microbiology
, vol.14
, Issue.2
, pp. 86-91
-
-
Egert, M.1
De Graaf, A.A.2
Smidt, H.3
De Vos, W.M.4
Venema, K.5
-
12
-
-
33947199799
-
Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing
-
Egert, M., de Graaf, A. A., Maathuis, A., de Waard, P., Plugge, C. M., Smidt, H., Deutz, N. E., Dijkema, C., de Vos, W. M. & Venema, K. (2007). Identification of glucose-fermenting bacteria present in an in vitro model of the human intestine by RNA-stable isotope probing. FEMS Microbiol Ecol 60, 126-135.
-
(2007)
FEMS Microbiol Ecol
, vol.60
, pp. 126-135
-
-
Egert, M.1
De Graaf, A.A.2
Maathuis, A.3
De Waard, P.4
Plugge, C.M.5
Smidt, H.6
Deutz, N.E.7
Dijkema, C.8
De Vos, W.M.9
Venema, K.10
-
13
-
-
18744374590
-
Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns
-
Fromin, N., Hamelin, J., Tarnawski, S., Roesti, D., Jourdain-Miserez, K., Forestier, N., Teyssier-Cuvelle, S., Gillet, F., Aragno, M. & Rossi, P. (2002). Statistical analysis of denaturing gel electrophoresis (DGE) fingerprinting patterns. Environ Microbiol 4, 634-643.
-
(2002)
Environ Microbiol
, vol.4
, pp. 634-643
-
-
Fromin, N.1
Hamelin, J.2
Tarnawski, S.3
Roesti, D.4
Jourdain-Miserez, K.5
Forestier, N.6
Teyssier-Cuvelle, S.7
Gillet, F.8
Aragno, M.9
Rossi, P.10
-
14
-
-
0024117598
-
Use of a three-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria
-
Gibson, G. R., Cummings, J. H. & Macfarlane, G. T. (1988). Use of a three-stage continuous culture system to study the effect of mucin on dissimilatory sulfate reduction and methanogenesis by mixed populations of human gut bacteria. Appl Environ Microbiol 54, 2750-2755.
-
(1988)
Appl Environ Microbiol
, vol.54
, pp. 2750-2755
-
-
Gibson, G.R.1
Cummings, J.H.2
Macfarlane, G.T.3
-
15
-
-
0030984907
-
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology
-
Guschin, D. Y., Mobarry, B. K., Proudnikov, D., Stahl, D. A., Rittmann, B. E. & Mirzabekov, A. D. (1997). Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol 63, 2397-2402.
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2397-2402
-
-
Guschin, D.Y.1
Mobarry, B.K.2
Proudnikov, D.3
Stahl, D.A.4
Rittmann, B.E.5
Mirzabekov, A.D.6
-
16
-
-
0027486534
-
The Pearson product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms
-
Häne, B. G., Jäger, K. & Drexler, H. G. (1993). The Pearson product-moment correlation coefficient is better suited for identification of DNA fingerprint profiles than band matching algorithms. Electrophoresis 14, 967-972.
-
(1993)
Electrophoresis
, vol.14
, pp. 967-972
-
-
Häne, B.G.1
Jäger, K.2
Drexler, H.G.3
-
17
-
-
0036139245
-
Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA
-
Heilig, H. G., Zoetendal, E. G., Vaughan, E. E., Marteau, P., Akkermans, A. D. L. & de Vos, W. M. (2002). Molecular diversity of Lactobacillus spp. and other lactic acid bacteria in the human intestine as determined by specific amplification of 16S ribosomal DNA. Appl Environ Microbiol 68, 114-123.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 114-123
-
-
Heilig, H.G.1
Zoetendal, E.G.2
Vaughan, E.E.3
Marteau, P.4
Akkermans, A.D.L.5
De Vos, W.M.6
-
18
-
-
0002002528
-
A simplified Monte Carlo significance test procedure
-
Hope, A. C. A. (1968). A simplified Monte Carlo significance test procedure. J R Stat Soc Series B Stat Methodol 30, 582-598.
-
(1968)
J R Stat Soc Series B Stat Methodol
, vol.30
, pp. 582-598
-
-
Hope, A.C.A.1
-
19
-
-
0242489339
-
Degradation of cross-linked and noncross-linked arabinoxylans by the intestinal microbiota in children
-
Hopkins, M. J., Englyst, H. N., Macfarlane, S., Furrie, E., Macfarlane, G. T. & McBain, A. J. (2003). Degradation of cross-linked and noncross-linked arabinoxylans by the intestinal microbiota in children. Appl Environ Microbiol 69, 6354-6360.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 6354-6360
-
-
Hopkins, M.J.1
Englyst, H.N.2
Macfarlane, S.3
Furrie, E.4
Macfarlane, G.T.5
McBain, A.J.6
-
20
-
-
0027363920
-
Polymerase chain reaction detection of nonviable bacterial pathogens
-
Josephson, K. L., Gerba, C. P. & Pepper, I. L. (1993). Polymerase chain reaction detection of nonviable bacterial pathogens. Appl Environ Microbiol 59, 3513-3515.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 3513-3515
-
-
Josephson, K.L.1
Gerba, C.P.2
Pepper, I.L.3
-
21
-
-
33745126173
-
Ecology and activity of clostridia in the intestine of mammals
-
Edited by P. Dürre. Boca Raton, FL: CRC Press
-
Konstantinov, S. R., Smidt, H. & Akkermans, A. D. L. (2005). Ecology and activity of clostridia in the intestine of mammals. In Handbook of Clostridia, pp. 785-794. Edited by P. Dürre. Boca Raton, FL: CRC Press.
-
(2005)
Handbook of Clostridia
, pp. 785-794
-
-
Konstantinov, S.R.1
Smidt, H.2
Akkermans, A.D.L.3
-
22
-
-
63849262393
-
Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing
-
Kovatcheva-Datchary, P., Egert, M., Maathuis, A., Rajilić- Stojanović, M., deGraaf, A. A., Smidt, H., de Vos, W.M. & Venema, K. (2009a). Linking phylogenetic identities of bacteria to starch fermentation in an in vitro model of the large intestine by RNA-based stable isotope probing. Environ Microbiol 11, 914-926.
-
(2009)
Environ Microbiol
, vol.11
, pp. 914-926
-
-
Kovatcheva-Datchary, P.1
Egert, M.2
Maathuis, A.3
Rajilić- Stojanović, M.4
DeGraaf, A.A.5
Smidt, H.6
De Vos, W.M.7
Venema, K.8
-
23
-
-
77952670454
-
Tools for the tract: Understanding the functionality of the gastrointestinal tract
-
Kovatcheva-Datchary, P., Zoetendal, E. G., Venema, K., de Vos, W. M. & Smidt, H. (2009b). Tools for the tract: understanding the functionality of the gastrointestinal tract. Therap Adv Gastroenterol 2, S9-S22.
-
(2009)
Therap Adv Gastroenterol
, vol.2
-
-
Kovatcheva-Datchary, P.1
Zoetendal, E.G.2
Venema, K.3
De Vos, W.M.4
Smidt, H.5
-
24
-
-
33846956795
-
Selective colonization of insoluble substrates by human faecal bacteria
-
Leitch, E. C., Walker, A. W., Duncan, S. H., Holtrop, G. & Flint, H. J. (2007). Selective colonization of insoluble substrates by human faecal bacteria. Environ Microbiol 9, 667-679.
-
(2007)
Environ Microbiol
, vol.9
, pp. 667-679
-
-
Leitch, E.C.1
Walker, A.W.2
Duncan, S.H.3
Holtrop, G.4
Flint, H.J.5
-
26
-
-
74249119678
-
Obesity and the human microbiome
-
Ley, R. E. (2010). Obesity and the human microbiome. Curr Opin Gastroenterol 26, 5-11.
-
(2010)
Curr Opin Gastroenterol
, vol.26
, pp. 5-11
-
-
Ley, R.E.1
-
27
-
-
28544435896
-
Highly parallel microbial diagnostics using oligonucleotide microarrays
-
Loy, A. & Bodrossy, L. (2006). Highly parallel microbial diagnostics using oligonucleotide microarrays. Clin Chim Acta 363, 106-119.
-
(2006)
Clin Chim Acta
, vol.363
, pp. 106-119
-
-
Loy, A.1
Bodrossy, L.2
-
28
-
-
34247159880
-
Models for intestinal fermentation: Association between food components, delivery systems, bioavailability and functional interactions in the gut
-
Macfarlane, G. T. & Macfarlane, S. (2007). Models for intestinal fermentation: association between food components, delivery systems, bioavailability and functional interactions in the gut. Curr Opin Biotechnol 18, 156-162.
-
(2007)
Curr Opin Biotechnol
, vol.18
, pp. 156-162
-
-
Macfarlane, G.T.1
Macfarlane, S.2
-
29
-
-
0026586542
-
Comparison of fermentation reactions in different regions of the human colon
-
Macfarlane, G. T., Gibson, G. R. & Cummings, J. H. (1992). Comparison of fermentation reactions in different regions of the human colon. J Appl Bacteriol 72, 57-64.
-
(1992)
J Appl Bacteriol
, vol.72
, pp. 57-64
-
-
Macfarlane, G.T.1
Gibson, G.R.2
Cummings, J.H.3
-
30
-
-
0031944894
-
Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colon
-
Macfarlane, G. T., Macfarlane, S. & Gibson, G. R. (1998). Validation of a three-stage compound continuous culture system for investigating the effect of retention time on the ecology and metabolism of bacteria in the human colon. Microb Ecol 35, 180-187.
-
(1998)
Microb Ecol
, vol.35
, pp. 180-187
-
-
Macfarlane, G.T.1
Macfarlane, S.2
Gibson, G.R.3
-
31
-
-
31944440308
-
Colonization of mucin by human intestinal bacteria and establishment of biofilm communities in a two-stage continuous culture system
-
Macfarlane, S., Woodmansey, E. J. & Macfarlane, G. T. (2005). Colonization of mucin by human intestinal bacteria and establishment of biofilm communities in a two-stage continuous culture system. Appl Environ Microbiol 71, 7483-7492.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7483-7492
-
-
Macfarlane, S.1
Woodmansey, E.J.2
Macfarlane, G.T.3
-
32
-
-
0033491174
-
A computer-controlled system to simulate conditions of the large intestine with peristaltic mixing, water absorption and absorption of fermentation products
-
Minekus, M., Smeets-Peeters, M., Bernalier, A., Marol-Bonnin, S., Havenaar, R., Marteau, P., Alric, M., Fonty, G. & Huis in't Veld, J. H. (1999). A computer-controlled system to simulate conditions of the large intestine with peristaltic mixing, water absorption and absorption of fermentation products. Appl Microbiol Biotechnol 53, 108-114.
-
(1999)
Appl Microbiol Biotechnol
, vol.53
, pp. 108-114
-
-
Minekus, M.1
Smeets-Peeters, M.2
Bernalier, A.3
Marol-Bonnin, S.4
Havenaar, R.5
Marteau, P.6
Alric, M.7
Fonty, G.8
Huis In't Veld, J.H.9
-
33
-
-
0027251567
-
Development of a 5-step multi-chamber reactor as a simulation of the human intestinal microbial ecosystem
-
Molly, K., Woestyne, M. & Verstraete, W. (1993). Development of a 5-step multi-chamber reactor as a simulation of the human intestinal microbial ecosystem. Appl Microbiol Biotechnol 39, 254-258.
-
(1993)
Appl Microbiol Biotechnol
, vol.39
, pp. 254-258
-
-
Molly, K.1
Woestyne, M.2
Verstraete, W.3
-
34
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer, G., de Waal, E. C. & Uitterlinden, A. G. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59, 695-700.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
35
-
-
33644962464
-
Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray
-
Neufeld, J. D., Mohn, W. W. & de Lorenzo, V. (2006). Composition of microbial communities in hexachlorocyclohexane (HCH) contaminated soils from Spain revealed with a habitat-specific microarray. Environ Microbiol 8, 126-140.
-
(2006)
Environ Microbiol
, vol.8
, pp. 126-140
-
-
Neufeld, J.D.1
Mohn, W.W.2
De Lorenzo, V.3
-
36
-
-
33748746842
-
Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells
-
Nocker, A., Cheung, C.-Y. & Campera, A. K. (2006). Comparison of propidium monoazide with ethidium monoazide for differentiation of live vs. dead bacteria by selective removal of DNA from dead cells. J Microbiol Methods 67, 310-320.
-
(2006)
J Microbiol Methods
, vol.67
, pp. 310-320
-
-
Nocker, A.1
Cheung, C.-Y.2
Campera, A.K.3
-
37
-
-
0029796310
-
Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis
-
Nübel, U., Engelen, B., Felske, A., Snaidr, J., Wieshuber, A., Amann, R. I., Ludwig, W. & Backhaus, H. (1996). Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol 178, 5636-5643.
-
(1996)
J Bacteriol
, vol.178
, pp. 5636-5643
-
-
Nübel, U.1
Engelen, B.2
Felske, A.3
Snaidr, J.4
Wieshuber, A.5
Amann, R.I.6
Ludwig, W.7
Backhaus, H.8
-
38
-
-
0036667647
-
Comparison of five in vitro digestion models to study the bioaccessibility of soil contaminants
-
Oomen, A. G., Hack, A., Minekus, M., Zeijdner, E., Cornelis, C., Schoeters, G., Verstraete, W., Van de Wiele, T., Wragg, J. & other authors (2002). Comparison of five in vitro digestion models to study the bioaccessibility of soil contaminants. Environ Sci Technol 36, 3326-3334.
-
(2002)
Environ Sci Technol
, vol.36
, pp. 3326-3334
-
-
Oomen, A.G.1
Hack, A.2
Minekus, M.3
Zeijdner, E.4
Cornelis, C.5
Schoeters, G.6
Verstraete, W.7
Van De Wiele, T.8
Wragg, J.9
-
39
-
-
31544436089
-
Rapid quantitative profiling of complex microbial populations
-
Palmer, C., Bik, E. M., Eisen, M. B., Eckburg, P. B., Sana, T. R., Wolber, P. K., Relman, D. A. & Brown, P. O. (2006). Rapid quantitative profiling of complex microbial populations. Nucleic Acids Res 34, e5.
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Palmer, C.1
Bik, E.M.2
Eisen, M.B.3
Eckburg, P.B.4
Sana, T.R.5
Wolber, P.K.6
Relman, D.A.7
Brown, P.O.8
-
40
-
-
4344645434
-
PCR-DGGE-based quantification of stability of the microbial community in a simulator of the human intestinal microbial ecosystem
-
DOI 10.1016/j.femsec.2004.05.002, PII S0168649604001606
-
Possemiers, S., Verthé, K., Uyttendaele, S. & Verstraete, W. (2004). PCR-DGGE-based quantification of stability of the microbial community in a simulator of the human intestinal microbial ecosystem. FEMS Microbiol Ecol 49, 495-507. (Pubitemid 39119606)
-
(2004)
FEMS Microbiology Ecology
, vol.49
, Issue.3
, pp. 495-507
-
-
Possemiers, S.1
Verthe, K.2
Uyttendaele, S.3
Verstraete, W.4
-
41
-
-
4143084885
-
Polydextrose, lactitol, and fructo-oligosaccharide fermentation by colonic bacteria in a three-stage continuous culture system
-
Probert, H. M., Apajalahti, J. H. A., Rautonen, N., Stowell, J. & Gibson, G. R. (2004). Polydextrose, lactitol, and fructo-oligosaccharide fermentation by colonic bacteria in a three-stage continuous culture system. Appl Environ Microbiol 70, 4505-4511.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4505-4511
-
-
Probert, H.M.1
Apajalahti, J.H.A.2
Rautonen, N.3
Stowell, J.4
Gibson, G.R.5
-
42
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin, J., Li, R., Raes, J., Arumugam, M., Burgdorf, K. S., Manichanh, C., Nielsen, T., Pons, N., Levenez, F. & other authors (2010). A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464, 59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
-
43
-
-
34547683600
-
Diversity of the human gastrointestinal tract microbiota revisited
-
DOI 10.1111/j.1462-2920.2007.01369.x
-
Rajilić-Stojanović, M., Smidt, H. & de Vos, W. M. (2007). Diversity of the human gastrointestinal tract microbiota revisited. Environ Microbiol 9, 2125-2136. (Pubitemid 47222128)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.9
, pp. 2125-2136
-
-
Rajilic-Stojanovic, M.1
Smidt, H.2
De Vos, W.M.3
-
44
-
-
67649945513
-
Development and application of the human intestinal tract chip, a phylogenetic microarray: Analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults
-
Rajilić-Stojanović, M., Heilig, H. G. H. J., Molenaar, D., Kajander, K., Surakka, A., Smidt, H. & de Vos, W. M. (2009). Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults. Environ Microbiol 11, 1736-1751.
-
(2009)
Environ Microbiol
, vol.11
, pp. 1736-1751
-
-
Rajilić-Stojanović, M.1
Heilig, H.G.H.J.2
Molenaar, D.3
Kajander, K.4
Surakka, A.5
Smidt, H.6
De Vos, W.M.7
-
45
-
-
0004136246
-
-
2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory
-
Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
-
(1989)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
46
-
-
0028116158
-
Rapid silver staining and recovery of PCR products separated on polyacrylamide gels
-
Sanguinetti, C. J., Dias Neto, E. & Simpson, A. J. G. (1994). Rapid silver staining and recovery of PCR products separated on polyacrylamide gels. Biotechniques 17, 914-921.
-
(1994)
Biotechniques
, vol.17
, pp. 914-921
-
-
Sanguinetti, C.J.1
Dias Neto, E.2
Simpson, A.J.G.3
-
47
-
-
33344464667
-
Measurements of diversity
-
Simpson, E. H. (1949). Measurements of diversity. Nature 163, 688.
-
(1949)
Nature
, vol.163
, pp. 688
-
-
Simpson, E.H.1
-
48
-
-
32944455360
-
DNA microarrays as salivary diagnostic tools for characterizing the oral cavity's microbial community
-
Smoot, L. M., Smoot, J. C., Smidt, H., Noble, P. A., Konneke, M., McMurry, Z. A. & Stahl, D. A. (2005). DNA microarrays as salivary diagnostic tools for characterizing the oral cavity's microbial community. Adv Dent Res 18, 6-11.
-
(2005)
Adv Dent Res
, vol.18
, pp. 6-11
-
-
Smoot, L.M.1
Smoot, J.C.2
Smidt, H.3
Noble, P.A.4
Konneke, M.5
McMurry, Z.A.6
Stahl, D.A.7
-
49
-
-
0345822598
-
The positive false discovery rate: A Bayesian interpretation and the q-value
-
Storey, J. D. (2003). The positive false discovery rate: a Bayesian interpretation and the q-value. Ann Stat 31, 2013-2035.
-
(2003)
Ann Stat
, vol.31
, pp. 2013-2035
-
-
Storey, J.D.1
-
50
-
-
0032755259
-
Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut
-
Suau, A., Bonnet, R., Sutren, M., Godon, J.-J., Gibson, G. R., Collins, M. D. & Doré, J. (1999). Direct analysis of genes encoding 16S rRNA from complex communities reveals many novel molecular species within the human gut. Appl Environ Microbiol 65, 4799-4807.
-
(1999)
Appl Environ Microbiol
, vol.65
, pp. 4799-4807
-
-
Suau, A.1
Bonnet, R.2
Sutren, M.3
Godon, J.-J.4
Gibson, G.R.5
Collins, M.D.6
Doré, J.7
-
52
-
-
10644253779
-
Prebiotic effects of chicory inulin in the simulator of the human intestinal microbial ecosystem
-
van de Wiele, T. R., Boon, N., Possemiers, S., Jacobs, H. & Verstraete, W. (2004). Prebiotic effects of chicory inulin in the simulator of the human intestinal microbial ecosystem. FEMS Microbiol Ecol 51, 143-153.
-
(2004)
FEMS Microbiol Ecol
, vol.51
, pp. 143-153
-
-
Van De Wiele, T.R.1
Boon, N.2
Possemiers, S.3
Jacobs, H.4
Verstraete, W.5
-
53
-
-
77955566063
-
The in vitro cultured gut microbiota is reproducible, colon-region specific and enriched in Bacteroidetes and Clostridium cluster IX
-
Van den Abbeele, P., Grootaert, C., Marzorati, M., Possemiers, S., Verstraete, W., Gérard, P., Rabot, S., Bruneau, A., El Aidy, S. & other authors (2010). The in vitro cultured gut microbiota is reproducible, colon-region specific and enriched in Bacteroidetes and Clostridium cluster IX. Appl Environ Microbiol 76, 5237-5246.
-
(2010)
Appl Environ Microbiol
, vol.76
, pp. 5237-5246
-
-
Van Den Abbeele, P.1
Grootaert, C.2
Marzorati, M.3
Possemiers, S.4
Verstraete, W.5
Gérard, P.6
Rabot, S.7
Bruneau, A.8
El Aidy, S.9
-
54
-
-
0345257151
-
The effect of various inulins and Clostridium difficile on the metabolic activity of the human colonic microbiota in vitro
-
van Nuenen, M. H. M. C., Meyer, P. D. & Venema, K. (2003). The effect of various inulins and Clostridium difficile on the metabolic activity of the human colonic microbiota in vitro. Microb Ecol Health Dis 15, 137-144.
-
(2003)
Microb Ecol Health Dis
, vol.15
, pp. 137-144
-
-
Van Nuenen, M.H.M.C.1
Meyer, P.D.2
Venema, K.3
-
55
-
-
0000379811
-
TNO's in vitro large intestinal model: An excellent screening tool for functional food and pharmaceutical research
-
Venema, K., van Nuenen, M., Smeets-Peeters, M., Minekus, M. & Havenaar, R. (2000). TNO's in vitro large intestinal model: an excellent screening tool for functional food and pharmaceutical research. Nutrition/Ernährung 24, 558-564.
-
(2000)
Nutrition/Ernährung
, vol.24
, pp. 558-564
-
-
Venema, K.1
Van Nuenen, M.2
Smeets-Peeters, M.3
Minekus, M.4
Havenaar, R.5
-
56
-
-
0344233202
-
The effect of lactulose on the composition of the intestinal microbiota and short-chain fatty acid production in human volunteers and a computer-controlled model of the proximal large intestine
-
Venema, K., van Nuenen, M. H. M. C., van den Heuvel, E. G., Pool, W. & van der Vossen, J. M. B. M. (2003). The effect of lactulose on the composition of the intestinal microbiota and short-chain fatty acid production in human volunteers and a computer-controlled model of the proximal large intestine. Microb Ecol Health Dis 15, 94-105.
-
(2003)
Microb Ecol Health Dis
, vol.15
, pp. 94-105
-
-
Venema, K.1
Van Nuenen, M.H.M.C.2
Van Den Heuvel, E.G.3
Pool, W.4
Van Der Vossen, J.M.B.M.5
-
57
-
-
18844395401
-
D-Tagatose increases butyrate production by the colonic microbiota in healthy men and women
-
Venema, K., Vermunt, S. H. F. & Brink, E. J. (2005). D-Tagatose increases butyrate production by the colonic microbiota in healthy men and women. Microb Ecol Health Dis 17, 47-57.
-
(2005)
Microb Ecol Health Dis
, vol.17
, pp. 47-57
-
-
Venema, K.1
Vermunt, S.H.F.2
Brink, E.J.3
-
58
-
-
34248179977
-
Unravelling microbial communities with DNA-microarrays: Challenges and future directions
-
Wagner, M., Smidt, H., Loy, A. & Zhou, J. (2007). Unravelling microbial communities with DNA-microarrays: challenges and future directions. Microb Ecol 53, 498-506.
-
(2007)
Microb Ecol
, vol.53
, pp. 498-506
-
-
Wagner, M.1
Smidt, H.2
Loy, A.3
Zhou, J.4
-
59
-
-
0023743841
-
Short chain fatty-acid distributions of enema samples from a sigmoidoscopy population - An association of high acetate and low butyrate ratios with adenomatous polyps and colon cancer
-
Weaver, G. A., Krause, J. A., Miller, T. L. & Wolin, M. J. (1988). Short chain fatty-acid distributions of enema samples from a sigmoidoscopy population - an association of high acetate and low butyrate ratios with adenomatous polyps and colon cancer. Gut 29, 1539-1543.
-
(1988)
Gut
, vol.29
, pp. 1539-1543
-
-
Weaver, G.A.1
Krause, J.A.2
Miller, T.L.3
Wolin, M.J.4
-
60
-
-
0037772204
-
Microarrays for bacterial detection and microbial community analysis
-
DOI 10.1016/S1369-5274(03)00052-3
-
Zhou, J. (2003). Microarrays for bacterial detection and microbial community analysis. Curr Opin Microbiol 6, 288-294. (Pubitemid 36841673)
-
(2003)
Current Opinion in Microbiology
, vol.6
, Issue.3
, pp. 288-294
-
-
Zhou, J.1
-
61
-
-
0034814007
-
The host genotype affects the bacterial community in the human gastrointestinal tract
-
Zoetendal, E. G., Akkermans, A. D., Akkermans-van Vliet, W. M., de Visser, J. A. G. M. & de Vos, W. M. (2001). The host genotype affects the bacterial community in the human gastrointestinal tract. Microb Ecol Health Dis 13, 129-134.
-
(2001)
Microb Ecol Health Dis
, vol.13
, pp. 129-134
-
-
Zoetendal, E.G.1
Akkermans, A.D.2
Akkermans-van Vliet, W.M.3
De Visser, J.A.G.M.4
De Vos, W.M.5
-
62
-
-
0942279586
-
Molecular ecological analysis of the gastrointestinal microbiota: A review
-
Zoetendal, E. G., Collier, C. T., Koike, S., Mackie, R. I. & Gaskins, H. R. (2004). Molecular ecological analysis of the gastrointestinal microbiota: a review. J Nutr 134, 465-472.
-
(2004)
J Nutr
, vol.134
, pp. 465-472
-
-
Zoetendal, E.G.1
Collier, C.T.2
Koike, S.3
Mackie, R.I.4
Gaskins, H.R.5
-
63
-
-
33645471793
-
A microbial world within us
-
Zoetendal, E. G., Vaughan, E. E. & de Vos, W. M. (2006). A microbial world within us. Mol Microbiol 59, 1639-1650.
-
(2006)
Mol Microbiol
, vol.59
, pp. 1639-1650
-
-
Zoetendal, E.G.1
Vaughan, E.E.2
De Vos, W.M.3
-
64
-
-
54349126970
-
High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota
-
Zoetendal, E. G., Rajilić-Stojanović, M. & de Vos, W. M. (2008). High-throughput diversity and functionality analysis of the gastrointestinal tract microbiota. Gut 57, 1605-1615.
-
(2008)
Gut
, vol.57
, pp. 1605-1615
-
-
Zoetendal, E.G.1
Rajilić-Stojanović, M.2
De Vos, W.M.3
|