Development of SNP assays associated with oleic acid QTLs in N00-3350 soybean

Euphytica

Volumn 176, Issue 3, 2010, Pages 403-415

  Ha, Bo Keun ^a   Monteros, Maria J ^b   Boerma, H Roger ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b PLANT BIOLOGY DIVISION   (United States)

Author keywords

Fatty acid; Oleic acid; SimpleProbe; SNP genotyping; Soybean

Indexed keywords

ARABIDOPSIS; GLYCINE MAX;

EID: 78049322324     PISSN: 00142336     EISSN: 15735060     Source Type: Journal    
DOI: 10.1007/s10681-010-0225-9     Document Type: Article

References (48)

1. Aghoram K, Wilson RF, Burton JW, Dewey RE (2006) A mutation in a 3-keto-acyl-ACP synthase II gene is associated with elevated palmitic acid levels in soybean seeds. Crop Sci 46: 2453-2459.
2. Arondel V, Lemieux B, Hwang I, Gibson S, Goodman HM, Somerville CR (1992) Map-based cloning of a gene controlling omega-3 fatty acid desaturation in Arabidopsis. Science 258: 1353-1355.
3. Bachlava E, Dewey RE, Auclair J, Wang S, Burton JW, Cardinal AJ (2008) Mapping genes encoding microsomal ω-6 desaturase enzymes and their cosegregation with QTL affecting oleate content in soybean. Crop Sci 48: 640-650.
4. Bilyeu KD, Palavalli L, Sleper DA, Beuselinck PR (2003) Three microsomal omega-3 fatty-acid desaturase genes contribute to soybean linolenic acid levels. Crop Sci 43: 1833-1838.
5. Bilyeu K, Palavalli L, Sleper D, Beuselinck P (2005) Mutations in soybean microsomal omega-3 fatty acid desaturase genes reduce linolenic acid concentration in soybean seeds. Crop Sci 45: 1830-1836.
6. Boerma HR, Hussey RS, Phillips DV, Wood ED, Rowan GB, Finnerty SL (2000) Registration of 'Boggs' soybean. Crop Sci 40: 294-295.
7. Burton JW, Wilson RF, Rebetzke GJ, Pantalone VR (2006) Registration of N98-4445A mid-oleic soybean germplasm line. Crop Sci 46: 1010-1012.
8. 9 stearoyl-ACP desaturases. Crop Sci 46: 840-846.
9. Cahoon EB (2003) Genetic enhancement of soybean oil for industrial uses: prospects and challenges. AgBioForum 6: 11-13.
10. Cardinal AJ, Burton JW, Camacho-Roger AM, Yang JH, Wilson RF, Dewey RE (2007) Molecular analysis of soybean lines with low palmitic acid content in the seed oil. Crop Sci 47: 304-310.
11. nc and fap1 alleles on agronomic traits in two soybean populations. Crop Sci 48: 633-639.
12. Chappell AS, Bilyeu KD (2006) A GmFAD3A mutation in the low linolenic acid soybean mutant C1640. Plant Breeding 125: 535-536.
13. Chappell AS, Bilyeu KD (2007) The low linolenic acid soybean line PI 361088B contains a novel GmFAD3A mutation. Crop Sci 47: 1705-1710.
14. Choi I-Y, Hyten DL, Matukumalli LK, Song Q, Chaky JM, Quigley CV, Chase K, Lark KG, Reiter RS, Yoon M-S, Hwang E-Y, Yi S-I, Young ND, Shoemaker RC, van Tassell CP, Specht JE, Cregan PB (2007) A soybean transcript Map: gene distribution, haplotype and single-nucleotide polymorphism analysis. Genetics 176: 685-696.
15. Dehesh K, Tai H, Edwards P, Byrne J, Jaworski JG (2001) Overexpression of 3-ketoacyl-acyl-carrier protein synthase IIIs in plants reduces the rate of lipid synthesis. Plant Physiol 125: 1103-1114.
16. Faris JD, Li WL, Liu DJ, Chen PD, Gill BS (1999) Candidate gene analysis of quantitative disease resistance in wheat. Theor Appl Genet 98: 219-225.
17. Gilsinger JJ (2008) Reciprocal effects and selection for altered fatty acid composition of soybean oil. PhD Dissertation, NC State, North Carolina, Raleigh.
18. Ha BK, Boerma HR (2008) High-throughput SNP genotyping by melting curve analysis for resistance to southern root-knot nematode and frogeye leaf spot in soybean. J Crop Sci Biotech 11: 91-100.
19. Harwood JL (1988) Fatty acid metabolism. Annu Rev Plant Physiol Plant Mol Biol 39: 101-138.
20. Heppard EP, Kinney AJ, Stecca KL, Miao GH (1996) Developmental and growth temperature regulation of two different microsomal ω-6 desaturase genes in soybeans. Plant Physiol 110: 311-319.
21. Iba K, Gibson S, Nishiuchi T, Fuse T, Nishimura M, Arondel V, Hugly S, Somerville C (1993) A gene encoding a chloroplast ω-3 fatty acid desaturase complements alterations in fatty acid desaturation and chloroplast copy number of the fad7 mutant of Arabidopsis thaliana. J Biol Chem 268: 24099-24105.
22. Ke J, Wen T-N, Nikolau BJ, Wurtele ES (2000) Coordinate regulation of the nuclear and plastidic genes coding for the subunits of the heteromeric acetyl-coenzyme A carboxylase. Plant Physiol 122: 1057-1072.
23. Kosambi DD (1944) The estimation of map distances from recombination values. Ann Eugen 12: 172-175.
24. Lemieux B, Miquel M, Somerville C, Browse J (1990) Mutants of Arabidopsis with alterations in seed lipid fatty acid composition. Theor Appl Genet 80: 234-240.
25. Li Z, Wilson RF, Rayford WE, Boerma HR (2002) Molecular mapping genes conditioning reduced palmitic acid content in N87-2122-4 soybean. Crop Sci 42: 373-378.
26. Lichtenstein AH, Ausman LM, Jalbert SM, Schaefer EJ (1999) Effects of different forms of dietary hydrogenated fats on serum lipoprotein cholesterol levels. N Engl J Med 340: 1933-1940.
27. Manly KF, Cudmore JRH, Meer JM (2001) Map manager QTX, cross-platform software for genetic mapping. Mammalian Genome 12: 930-932.
28. Mercer LC, Wynne JC, Young CT (1990) Inheritance of fatty acid content in peanut oil. Peanut Sci 17: 17-21.
29. Monteros MJ, Burton JW, Boerma HR (2008) Molecular mapping and confirmation of QTLs associated with oleic acid content in N00-3350 soybean. Crop Sci 48: 2223-2234.
30. O'Hara P, Slabas AR, Fawcett T (2002) Fatty acid and lipid biosynthetic genes are expressed at constant molar ratios but different absolute levels during embryogenesis. Plant Physiol 129: 310-320.
31. Sandhu D, Alt J, Scherder C, Fehr W, Bhattacharyya M (2007) Enhanced oleic acid content in the soybean mutant M23 is associated with the deletion in the Fad2-1a gene encoding a fatty acid desaturase. J Am Oil Chem Soc 84: 229-235.
32. SAS (2001) SAS/STAT user's guide. Version 8. SAS Inst., Cary, NC.
33. Schlueter JA, Vasylenko-Sanders IF, Deshpande S, Yi J, Siegfried M, Roe BA, Schlueter SD, Scheffler BE, Shoemaker RC (2007) The FAD2 gene family of soybean: insights into the structural and functional divergence of a paleopolyploid genome. Crop Sci 47: S-14-26.
34. Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang X-C, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA (2010) Genome sequence of the palaeopolyploid soybean. Nature 463: 178-183.
35. Shoemaker R, Keim P, Vodkin L, Retzel E, Clifton SW, Waterston R, Smoller D, Coryell V, Khanna A, Erpelding J, Gai X, Brendel V, Raph-Schmidt C, Shoop EG, Vielweber CJ, Schmatz M, Pape D, Bowers Y, Theising B, Martin J (2002) A compilation of soybean ESTs: generation and analysis. Genome 45: 329-338.
36. Slabaugh MB, Huestis GM, Leonard J, Holloway JL, Rosato C, Hongtrakul V, Martini N, Toepfer R, Voetz M, Schell J, Knapp SJ (1997) Sequence-based genetic markers for genes and gene families: single-strand conformational polymorphisms for the fatty acid synthesis genes of Cuphea. Theor Appl Genet 94: 400-408.
37. Somerville C, Browse J, Jaworski JG, Ohlrogge JB (2000) Lipids. In: Buchanan BB, Gruissem W, Jones RL (eds) Biochemistry and molecular biology of plants. American Society of Plant Physiologists, Rockville, MD, pp 456-527.
38. Stuber CW, Polacco M, Senior ML (1999) Synergy of empirical breeding, marker-assisted selection, and genomics to increase crop yield potential. Crop Sci 39: 1571-1583.
39. Tang GQ, Novitzky WP, Griffin HC, Huber SC, Dewey RE (2005) Oleate desaturase enzymes of soybean: evidence of regulation through differential stability and phosphorylation. Plant J 44: 433-446.
40. Thelen JJ, Ohlrogge JB (2002) Both antisense and sense expression of biotin carboxyl carrier protein isoform 2 inactivates the plastid acetyl-coenzyme A carboxylase in Arabidopsis thaliana. Plant J 32: 419-431.
41. Topfer R, Martini N (1994) Molecular cloning of cDNAs or genes encoding proteins involved in de novo fatty acid biosynthesis in plants. J Plant Physiol 143: 416-425.
42. Varshney RK, Graner A, Sorrells ME (2005) Genomics-assisted breeding for crop improvement. Trends Plant Sci 10: 621-630.
43. Voorrips RE (2002) MapChart: Software for the Graphical Presentation of Linkage Maps and QTLs. J Hered 93: 77-78.
44. Wilcox JR (2004) World distribution and trade of soybean. In: Boerma HR, Specht JE (eds) Soybeans: improvement, production, and uses, 3rd edn. ASA, CSSA, and SSSA, Madison, WI, pp 1-13.
45. Wilson RF (1987) Seed metabolism. In: Wilcox JR (ed) Soybeans: improvement, production and uses, 2nd edn. ASA, CSSA, and SSSA, Madison, WI, pp 643-686.
46. Wilson R, Marquardt T, Novitzky W, Burton J, Wilcox J, Kinney A, Dewey R (2001) Metabolic mechanisms associated with alleles governing the 16: 0 concentration of soybean oil. J Am Oil Chem Soc 78: 335-340.
47. 9-stearoyl-ACP-desaturase gene are associated with enhanced stearic acid levels in soybean seeds. Crop Sci 48: 2305-2313.
48. Zhu YL, Song QJ, Hyten DL, van Tassell CP, Matukumalli LK, Grimm DR, Hyatt SM, Fickus EW, Young ND, Cregan PB (2003) Single-nucleotide polymorphisms in soybean. Genetics 163: 1123-1134.