-
1
-
-
13144255696
-
The ecology of the genome-mobile DNA elements and their hosts
-
Brookfield JF. 2005. The ecology of the genome-mobile DNA elements and their hosts. Nat Rev Genet. 6:128-136.
-
(2005)
Nat. Rev. Genet.
, vol.6
, pp. 128-136
-
-
Brookfield, J.F.1
-
2
-
-
0025864962
-
Retroposons-seeds of evolution
-
Brosius J. 1991. Retroposons-seeds of evolution. Science. 251:753.
-
(1991)
Science
, vol.251
, pp. 753
-
-
Brosius, J.1
-
3
-
-
23744479962
-
Efficient transposition of the piggyBac (pb) transposon in mammalian cells and mice
-
Ding S, et al. 2005. Efficient transposition of the piggyBac (pb) transposon in mammalian cells and mice. Cell. 122:473-483.
-
(2005)
Cell.
, vol.122
, pp. 473-483
-
-
Ding, S.1
-
4
-
-
3042666256
-
Muscle: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. 2004. Muscle: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
-
(2004)
Nucleic Acids Res.
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
5
-
-
84860513986
-
Piler: Identification and classification of genomic repeats
-
Edgar RC, Myers EW. 2005. Piler: identification and classification of genomic repeats. Bioinformatics. 21 (Suppl 1): i152-i158.
-
(2005)
Bioinformatics
, vol.21
, Issue.1 SUPPL.
-
-
Edgar, R.C.1
Myers, E.W.2
-
6
-
-
0036114001
-
Biomedical applications and studies of molecular evolution: A proposal for a primate genomic library resource
-
Eichler EE, Dejong PJ. 2002. Biomedical applications and studies of molecular evolution: a proposal for a primate genomic library resource. Genome Res. 12:673-678.
-
(2002)
Genome Res.
, vol.12
, pp. 673-678
-
-
Eichler, E.E.1
Dejong, P.J.2
-
7
-
-
33750050266
-
The piggyBac transposon holds promise for human gene therapy
-
Feschotte C. 2006. The piggyBac transposon holds promise for human gene therapy. Proc Natl Acad Sci U S A. 103:14981-14982.
-
(2006)
Proc. Natl. Acad. Sci. U. S. A.
, vol.103
, pp. 14981-14982
-
-
Feschotte, C.1
-
8
-
-
1842684068
-
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
-
Gibbs RA, et al. 2004. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 428:493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Gibbs, R.A.1
-
9
-
-
0032080772
-
Activation of plant retrotransposons under stress conditions
-
Grandbastien MA. 1998. Activation of plant retrotransposons under stress conditions. Trends Plant Sci. 3:181-187.
-
(1998)
Trends Plant Sci.
, vol.3
, pp. 181-187
-
-
Grandbastien, M.A.1
-
10
-
-
0023037473
-
Nucleotide sequence analysis of the lemur β-globin gene family: Evidence for major rate fluctuations in globin polypeptide evolution
-
Harris S, Thackeray JR, Jeffreys AJ, Weiss ML. 1986. Nucleotide sequence analysis of the lemur β-globin gene family: evidence for major rate fluctuations in globin polypeptide evolution. Mol Biol Evol. 3:465-484.
-
(1986)
Mol. Biol. Evol.
, vol.3
, pp. 465-484
-
-
Harris, S.1
Thackeray, J.R.2
Jeffreys, A.J.3
Weiss, M.L.4
-
11
-
-
0037383240
-
Genomic clocks and evolutionary timescales
-
Hedges S, Kumar S. 2003. Genomic clocks and evolutionary timescales. Trends Genet. 19:200-206.
-
(2003)
Trends Genet.
, vol.19
, pp. 200-206
-
-
Hedges, S.1
Kumar, S.2
-
12
-
-
37549067404
-
Evolution of the xenopus piggyBac transposon family TxpB: Domesticated and untamed strategies of transposon subfamilies
-
Hikosaka A, Kobayashi T, Saito Y, Kawahara A. 2007. Evolution of the xenopus piggyBac transposon family TxpB: domesticated and untamed strategies of transposon subfamilies. Mol Biol Evol. 24:2648-2656.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 2648-2656
-
-
Hikosaka, A.1
Kobayashi, T.2
Saito, Y.3
Kawahara, A.4
-
13
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka J, et al. 2005. Repbase update, a database of eukaryotic repetitive elements. Cytogenet Genome Res. 110:462-467.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
-
14
-
-
0034612315
-
Genome evolution of wild barley (Hordeum spontaneum) by bare-1 retrotransposon dynamics in response to sharp microclimatic divergence
-
Kalendar R, Tanskanen J, Immonen S, Nevo E, Schulman AH. 2000. Genome evolution of wild barley (Hordeum spontaneum) by bare-1 retrotransposon dynamics in response to sharp microclimatic divergence. Proc Natl Acad Sci U S A. 97:6603-6607.
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 6603-6607
-
-
Kalendar, R.1
Tanskanen, J.2
Immonen, S.3
Nevo, E.4
Schulman, A.H.5
-
15
-
-
1542513556
-
Mobile elements: Drivers of genome evolution
-
Kazazian HH Jr. 2004. Mobile elements: drivers of genome evolution. Science. 303:1626-1632.
-
(2004)
Science
, vol.303
, pp. 1626-1632
-
-
Kazazian Jr., H.H.1
-
16
-
-
51349098498
-
Mutational analysis of highly conserved aspartate residues essential to the catalytic core of the piggyBac transposase
-
Keith JH, Schaeper CA, Fraser TS, Fraser MJ Jr. 2008. Mutational analysis of highly conserved aspartate residues essential to the catalytic core of the piggyBac transposase. BMC Mol Biol. 9:73.
-
(2008)
BMC Mol. Biol.
, vol.9
, pp. 73
-
-
Keith, J.H.1
Schaeper, C.A.2
Fraser, T.S.3
Fraser Jr., M.J.4
-
17
-
-
0019296687
-
A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
-
Kimura M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
18
-
-
0034814706
-
Stress induction of Bm1 RNA in silkworm larvae: SINEs, an unusual class of stress genes
-
Kimura RH, Choudary PV, Stone KK, Schmid CW. 2001. Stress induction of Bm1 RNA in silkworm larvae: SINEs, an unusual class of stress genes. Cell Stress Chaperones. 6:263-272.
-
(2001)
Cell. Stress Chaperones
, vol.6
, pp. 263-272
-
-
Kimura, R.H.1
Choudary, P.V.2
Stone, K.K.3
Schmid, C.W.4
-
19
-
-
3242810318
-
Mega3: Integrated software for molecular evolutionary genetics analysis and sequence alignment
-
Kumar S, Tamura K, Nei M. 2004. Mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150-163.
-
(2004)
Brief Bioinform
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
20
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander ES, et al. 2001. Initial sequencing and analysis of the human genome. Nature. 409:860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
-
21
-
-
0032735573
-
Physiological stresses increase mouse short interspersed element (SINE) RNA expression in vivo
-
Li T, Spearow J, Rubin CM, Schmid CW. 1999. Physiological stresses increase mouse short interspersed element (SINE) RNA expression in vivo. Gene. 239:367-372.
-
(1999)
Gene
, vol.239
, pp. 367-372
-
-
Li, T.1
Spearow, J.2
Rubin, C.M.3
Schmid, C.W.4
-
22
-
-
0034707216
-
Genomic scrap yard: How genomes utilize all that junk
-
Makalowski W. 2000. Genomic scrap yard: how genomes utilize all that junk. Gene. 259:61-67.
-
(2000)
Gene
, vol.259
, pp. 61-67
-
-
Makalowski, W.1
-
23
-
-
34248576291
-
Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences
-
Mikkelsen TS, et al. 2007. Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature. 447:167-177.
-
(2007)
Nature
, vol.447
, pp. 167-177
-
-
Mikkelsen, T.S.1
-
24
-
-
70350411861
-
Independent and parallel lateral transfer of DNA transposons in tetrapod genomes
-
Novick P, Smith J, Ray D, Boissinot S. 2010. Independent and parallel lateral transfer of DNA transposons in tetrapod genomes. Gene. 449:85-94.
-
(2010)
Gene
, vol.449
, pp. 85-94
-
-
Novick, P.1
Smith, J.2
Ray, D.3
Boissinot, S.4
-
25
-
-
34147105638
-
The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
-
Pace JK 2nd, Feschotte C. 2007. The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res. 17:422-432.
-
(2007)
Genome Res.
, vol.17
, pp. 422-432
-
-
Pace II, J.K.1
Feschotte, C.2
-
26
-
-
55949134735
-
Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods
-
Pace JK, Gilbert C, Clark MS, Feschotte C. 2008. Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods. Evolution. 105:17023-17028.
-
(2008)
Evolution
, vol.105
, pp. 17023-17028
-
-
Pace, J.K.1
Gilbert, C.2
Clark, M.S.3
Feschotte, C.4
-
27
-
-
29144455282
-
De novo identification of repeat families in large genomes
-
Price AL, Jones NC, Pevzner PA. 2005. De novo identification of repeat families in large genomes. Bioinformatics. 21 (Suppl 1): i351-i358.
-
(2005)
Bioinformatics
, vol.21
, Issue.1 SUPPL.
-
-
Price, A.L.1
Jones, N.C.2
Pevzner, P.A.3
-
28
-
-
43149113564
-
Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus
-
Pritham EJ, Feschotte C. 2007. Massive amplification of rolling-circle transposons in the lineage of the bat Myotis lucifugus. Proc Natl Acad Sci U S A. 17:422-432.
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.17
, pp. 422-432
-
-
Pritham, E.J.1
Feschotte, C.2
-
29
-
-
43149103661
-
Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus
-
Ray DA, et al. 2008. Multiple waves of recent DNA transposon activity in the bat, Myotis lucifugus. Genome Res. 18:717-728.
-
(2008)
Genome Res.
, vol.18
, pp. 717-728
-
-
Ray, D.A.1
-
30
-
-
33847633354
-
Bats with hats: Evidence for recent DNA transposon activity in genus Myotis
-
Ray DA, Pagan H J T, Thompson ML, Stevens RD. 2007. Bats with hats: evidence for recent DNA transposon activity in genus Myotis. Mol Biol Evol. 24:632-639.
-
(2007)
Mol. Biol. Evol.
, vol.24
, pp. 632-639
-
-
Ray, D.A.1
Pagan, H.J.T.2
Thompson, M.L.3
Stevens, R.D.4
-
31
-
-
0344442909
-
Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences
-
Sarkar A, et al. 2003. Molecular evolutionary analysis of the widespread piggyBac transposon family and related "domesticated" sequences. Mol Genet Genomics. 270:173-180.
-
(2003)
Mol. Genet. Genomics
, vol.270
, pp. 173-180
-
-
Sarkar, A.1
-
34
-
-
0141561907
-
Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions
-
van de Lagemaat LN, Landry JR, Mager DL, Medstrand P. 2003. Transposable elements in mammals promote regulatory variation and diversification of genes with specialized functions. Trends Genet. 19:530-536.
-
(2003)
Trends Genet.
, vol.19
, pp. 530-536
-
-
Van De Lagemaat, L.N.1
Landry, J.R.2
Mager, D.L.3
Medstrand, P.4
-
35
-
-
43449123631
-
Genome analysis of the platypus reveals unique signatures of evolution
-
Warren WC, et al. 2008. Genome analysis of the platypus reveals unique signatures of evolution. Nature. 453:175-183.
-
(2008)
Nature
, vol.453
, pp. 175-183
-
-
Warren, W.C.1
-
36
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston RH, et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature. 420:520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
-
37
-
-
36249023071
-
A unified classification system for eukaryotic transposable elements
-
Wicker T, et al. 2007. A unified classification system for eukaryotic transposable elements. Nat Rev Genet. 8:973-982.
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 973-982
-
-
Wicker, T.1
-
38
-
-
1642363902
-
Divergence dates for Malagasy lemurs estimated from multiple gene loci: Geological and evolutionary context
-
Yoder AD, Yang Z. 2004. Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context. Mol Ecol. 13:757-773.
-
(2004)
Mol. Ecol.
, vol.13
, pp. 757-773
-
-
Yoder, A.D.1
Yang, Z.2
-
39
-
-
70349323106
-
Transposable elements and an epigenetic basis for punctuated equilibria
-
Zeh DW, Zeh JA, Ishida Y. 2009. Transposable elements and an epigenetic basis for punctuated equilibria. Bioessays. 31:715-726.
-
(2009)
Bioessays
, vol.31
, pp. 715-726
-
-
Zeh, D.W.1
Zeh, J.A.2
Ishida, Y.3
|