Identification and molecular phylogeny of agriculturally important spider mites (Acari: Tetranychidae) based on mitochondrial and nuclear ribosomal DNA sequences, with an emphasis on Tetranychus

Zootaxa

Volumn , Issue 2647, 2010, Pages 1-15

  Li, Guo Qing ^a   Xue, Xiao Feng ^a   Zhang, Kai Jun ^a   Hong, Xiao Yue ^a  

^a NANJING AGRICULTURAL UNIVERSITY   (China)

Author keywords

COI; DNA barcoding; ITS; Phylogeny; Species identification; Tetranychidae

Indexed keywords

ACARI; AMPHITETRANYCHUS; AMPHITETRANYCHUS VIENNENSIS; ARANEAE; PANONYCHUS; PETROBIA; TETRANYCHIDAE; TETRANYCHUS; TETRANYCHUS CINNABARINUS; TETRANYCHUS TRUNCATUS; TETRANYCHUS TURKESTANI; TETRANYCHUS URTICAE;

EID: 77958183010     PISSN: 11755326     EISSN: 11755334     Source Type: Journal    
DOI: 10.11646/zootaxa.2647.1.1     Document Type: Article

References (49)

1. Barret, R. D. H. & Hebert, P. D. N. (2005) Identifying spiders through DNA barcodes. Canadian Journal of Zoology-revue Canadienne de Zoologie, 83, 481-491.
2. Ben-David, T., Melamed, S., Gerson, U. & Morin S. (2007) ITS2 sequences as barcodes for identifying and analyzing spider mites (Acari: Tetranychidae). Experimental and Applied Acarology, 41, 169-181.
3. Bolland, H. R., Gutierrez, J. & Flechtmann, C. H. W. (1998) World catalogue of the spider mite family (Acari: Tetranychidae), with references to taxonomy, synonymy, host plants and distribution. Brill Academic Publishers, Leiden. pp. 100-328.
4. Cruickshank, R. H. (2002) Molecular markers for the phylogenetics of mites and ticks. Systematic and Applied Acarology, 7, 3-14.
5. Di-Muccio, T., Marinucci, M., Frusteri, L., Maroli, M., Pesson, B. & Gramiccia, M. (2000) Phylogenetic analysis of Phlebotomus species belonging to the subgenus Larroussius (Diptera, Psychodidae) by ITS2 rDNA sequences. Insect Biochemistry and Molecular Biology, 30, 387-393.
6. Dupont, L. M. (1979) On gene flow between Tetranychus urticae Koch, 1836 and Tetranychus cinnabarinus (Boisduval) Boudreaux, 1956 (Acari: Tetranychidae): synonymy between the two species. Entomologia Experimentalis et Applicata, 25, 297-303.
7. Goka, K. & Takafuji, A. (1995) Allozyme variations among populations of the two-spotted spider mite, Tetranychus urticae Koch, in Japan. Applied Entomology and Zoology, 30, 567-579.
8. Gomi, K., Gotoh, T. & Noda, H. (1997) Wolbachia having no effect on reproductive incompatibility in Tetranychus kanzawai Kishida (Acari: Tetranychidae). Applied Entomology and Zoology, 32, 485-490.
9. Gotoh, T. & Tokioka, T. (1996) Genetic compatibility among diapausing red, non-diapausing red and diapausing green forms of the two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae). Japanese Journal of Applied Entomology and Zoology, 64, 215-225.
10. Hackett, B. J., Gimnig, J., Guelbeogo, W., Costantini, C., Koekemoer, L. L., Coetzee, M., Collins, F. H. & Besansky, N. J. (2000) Ribosomal DNA internal transcribed spacer (ITS2) sequences differentiate Anopheles funestus and An. rivulorum, and uncover a cryptic taxon. Insect Molecular Biology, 9, 369-374.
11. Hebert, P. D., Cywinska, A., Ball, S. L. & de Waard, J. R. (2003a) Biological identifications through DNA barcodes. Proceedings of the Royal Society B, 270, 313-321.
12. Hebert, P. D., Ratnasingham, S. & deWaard, J. R. (2003b) Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proceedings of the Royal Society B, 270 (Suppl. 1), S96-S99.
13. Helle, W. & Sabelis, M. W. (1985) Spider mites: their biology, natural enemies and control (World Crop Pests 1A-B), pp. 405-458. Elsevier, Amsterdam.
14. Hinomoto, N. & Takafuji, A. (1994) Studies on the population structures of the two-spotted mite Tetranychus urticae Koch, by allozyme variability analysis. Applied Entomology and Zoology, 29, 259-266.
15. Hinomoto, N., Osakabe, M., Gotoh, T. & Takafuji, A. (2001) Phylogenetic analysis of green and red forms of the twospotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae), in Japan, based on mitochondrial cytochrome oxidase subunit I sequences. Applied Entomology and Zoology, 36 (4), 459-464.
16. Hinomoto, N., Tran, D. P., Pham, A. T., Le, T. B. N., Tajima, R., Ohashi, K., Osakabe, M. & Takafuji, A. (2007) Identification of spider mites (Acari: Tetranychidae) by DNA sequences: a case study in Northern Vietnam. International Journal of Acarology, 33, 53-60.
17. Lee, M. L., Suh, S. J. & Kwon, Y. J. (1999) Phylogeny and diagnostic markers of six Tetranychus species (Acarina: Tetranychidae) in Korea based on the mitochondrial cytochrome oxidase subunit I. Journal of Asia Pacific Entomology, 2, 85-92.
18. Leigh, A. N., Wallman, J. F. & Dowton, M. (2008) Identification of forensically important Chrysomya (Diptera: Calliphoridae) species using the second ribosomal internal transcribed spacer (ITS2). Forensic Science International, 177, 238-247.
19. Luikart, G. & England, P. R. (1999) Statistical analysis of microsatellite DNA data. Trends in Ecology & Evolution, 14, 253-255.
20. Marrelli, M. T., Floeter-Winter, L. M. & Malafronte, R. S. (2005) Amazonian malaria vector anopheline relationships interpreted from ITS2 rDNA sequences. Medical and Veterinary Entomology, 19, 208-218.
21. Navajas, M. (1998) Host plant associations in the spider mite Tetranychus urticae (Acari: Tetranychidae): insights from molecular phylogeography. Experimental and Applied Acarology, 22, 201-204.
22. Navajas, M., Gutierrez, J., Bonato, O., Bolland, H. R. & Mapangou-Divassa, S. (1994) Intraspecific diversity of the cassava green mite Mononychellus progresivus (Acari: Tetranychidae) using comparisons of mitochondrial and nuclear ribosomal DNA sequences and cross-breeding. Experimental and Applied Acarology, 18, 351-360.
23. Navajas, M., Fournier, D., Lagnel, J., Gutierrez, J. & Boursot, P. (1996a) Mitochondrial COI sequences in mites: evidence for variations in base composition. Insect Molecular Biology, 5, 281-285.
24. Navajas, M., Gutierrez, J., Lagnel, J. & Boursot, P. (1996b) Mitochondrial cytochrome oxidase I in tetranychid mites: a comparison between molecular phylogeny and changes of morphological and life history traits. Bulletin of Entomological Research, 86, 407-417.
25. Navajas, M., Lagnel, J., Gutierrez, J. & Boursot, P. (1998) Species-wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with extensive mitochondrial COI polymorphism. Heredity, 80, 742-752.
26. Navajas, M., Lagnel, J., Fauvel, G. & De-Moraes, G. (1999) Sequence variation of ribosomal Internal Transcribed Spacers (ITS) in commercially important Phytoseiidae mites. Experimental and Applied Acarology, 23, 851-859.
27. Navajas, M. & Fenton, B. (2000) The application of molecular markers in the study of diversity in acarology: a review. Experimental and Applied Acarology, 24, 751-774. (Pubitemid 32258511)
28. Navajas, M., Gutierrez, J., Williams, M. & Gotoh, T. (2001) Synonymy between two spider mite species, Tetranychus kanazawai and T. hydrangeae (Acari: Tetranychidae), shown by ribosomal ITS2 sequences and cross-breeding experiments. Bulletin of Entomological Research, 91, 117-123.
29. Navajas, M., Perrot-Minnot, M. J., Lagnel, J., Migeon, A., Bourse, T. & Cornue, J. M. (2002) Genetic structure of a greenhouse population of the spider mite Tetranychus urticae: spatio-temporal analysis with microsatellite markers. Insect Molecular Biology, 11, 157-165.
30. Navajas, M. & Boursot, P. (2003) Nuclear ribosomal DNA monophyly versus mitochondrial DNA polyphyly in two closely related mite species: the influence of life history and molecular drive. Proceedings of the Royal Society of London, B (Supplement), 270, S124-S127.
31. Noge, K., Mori, N., Tanaka, C., Ritsuo, N., Tsuda, M. & Kuwahara, Y. (2005) Identification of astigmatid mites using the second internal transcribed spacer (ITS2) region and its application for phylogenetic study. Experimental and Applied Acarology, 35, 29-46.
32. Osakabe, M., Hirose, T. & Sato, M. (2002) Discrimination of four Japanese Tetranychus species (Acari: Tetranychidae) using PCR-RFLP of the inter-transcribed spacer region of nuclear ribosomal DNA. Applied Entomology and Zoology, 37, 399-407.
33. Osakabe, M., Kotsubo, Y., Tajima, R. & Hinomoto, N. (2008) Restriction Fragment Length Polymorphism Catalog for Molecular Identification of Japanese Tetranychus Spider Mites (Acari: Tetranychidae). Journal of Economic Entomology, 101, 1167-1175.
34. Posada, D. & Crandall, K. A. (1998) MODELTEST, testing the model of DNA substitution. Bioinformatics, 14, 817-818.
35. Ros, V. I. D. & Breeuwer, J. A. J. (2007) Spider mite (Acari: Tetranychidae) mitochondrial COI phylogeny reviewed: host plant relationships, phylogeography, reproductive parasites and barcoding. Experimental and Applied Acarology, 42, 239-262.
36. Sonnenberg, R., Nolte, A. W. & Tautz, D. (2007) An evaluation of LSU rDNA D1-D2 sequences for their use in species identification. Frontiers in Zoology, 4, 6.
37. * and Other Methods), Version 4. Sinauer Associates, Sunderland, MA.
38. Tamura, K., Dudley, J., Nei, M. & Kumar, S. (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 24, 1596-1599.
39. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997) The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 24, 4876-4882.
40. Toda, S., Osakabe, M. & Komazaki, S. (2000) Interspecific diversity of mitochondrial COI sequences in Japanese Panonychus species (Acari: Tetranychidae). Experimental and Applied Acarology, 24, 82.
41. Tsagkarakou, A., Navajas, M., Lagnel, J. & Pasteur, N. (1997) Population structure in the spider mite Tetranychus urticae (Acari: Tetranychidae) from Crete based on multiple allozymes. Heredity, 78, 84-92.
42. Tsagkarakou, A., Navajas, M., Papaioannou-Souliotis, P. & Pasteur, N. (1998) Gene flow among Tetranychus urticae (Acari: Tetranychidae) populations in Greece. Molecular Ecology, 7, 71-79.
43. Tsagkarakou, A., Navajas, M., Rousset, F. & Pasteur, N. (1999) Genetic differentiation in Tetranychus urticae (Acari: Tetranychidae) from greenhouses in France. Experimental and Applied Acarology, 23, 365-378.
44. Vargas, M., Garcia-Varlea, M., Laclette, J. P. & Perez, T. M. (2005) Application of ITS-2 sequences as markers for identification and phylogenetic inference within the genus Geomylichus (Acari: Listrophoridae). Experimental and Applied Acarology, 35, 223-238.
45. Wang, H.-F. (1981) Economic insect fauna of China (Acari: Tetranychidae). Science Press. Beijing, China. pp. 12-128.
46. Xia, X. & Xie, Z. (2001) DAMBE: software package for data analysis in molecular biology and evolution. Journal of Heredity, 92, 371-373.
47. Xie, L., Hong, X.-Y. & Xue, X.-F. (2006a) Population genetic structure of the two-spotted spider mite (Acari: Tetranychidae) from China. Annals of the Entomological Society of America, 99, 959-965.
48. Xie, L., Miao, H. & Hong, X.-Y. (2006b) The two-spotted spider mite Tetranychus urticae Koch and the carmine spider mite Tetranychus cinnabarinus (Boisduval) in China mixed in their Wolbachia phylogenetic tree. Zootaxa, 1165, 33-46.
49. Zhang, Z.-Q. & Jacobson, R. J. (2000) Using adult female morphological characters for differentiating Tetranychus urticae complex (Acari: Tetranychidae) from greenhouse tomato crops in UK. Systematic and Applied Acarology, 5, 69-76.