Spider mite (Acari: Tetranychidae) mitochondrial COI phylogeny reviewed: Host plant relationships, phylogeography, reproductive parasites and barcoding

Experimental and Applied Acarology

Volumn 42, Issue 4, 2007, Pages 239-262

  Ros, Vera I D ^a   Breeuwer, Johannes A J ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

Author keywords

Barcoding; COI; Reproductive parasites; Spider mites; Tetranychidae; Tetranychus urticae

Indexed keywords

CYTOCHROME C OXIDASE;

DNA; INTERSPECIFIC VARIATION; INTRASPECIFIC VARIATION; MITE; PHYLOGENY; PHYLOGEOGRAPHY;

ANIMAL; CLASSIFICATION; DNA SEQUENCE; GENETIC VARIABILITY; GENETICS; HOST PARASITE INTERACTION; MICROBIOLOGY; MOLECULAR EVOLUTION; PARASITOLOGY; PHYLOGENY; PLANT; REVIEW; SEQUENCE ALIGNMENT; SYMBIOSIS; TETRANYCHIDAE;

ANIMALS; ELECTRON TRANSPORT COMPLEX IV; EVOLUTION, MOLECULAR; HOST-PARASITE INTERACTIONS; PHYLOGENY; PLANTS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SYMBIOSIS; TETRANYCHIDAE; VARIATION (GENETICS);

ACARI; ARANEAE; TETRANYCHIDAE; TETRANYCHUS URTICAE;

EID: 34548528488     PISSN: 01688162     EISSN: 15729702     Source Type: Journal    
DOI: 10.1007/s10493-007-9092-z     Document Type: Review

References (60)

1. Akaike H (1974) A new look at the statistical model identification. IEEE Trans Autom Contr 19:716-723
2. Avise JC (2000) Phylogeography. The history and formation of species. Harvard University Press, Cambridge, MA
3. Ballard JWO, Rand DM (2005) The population biology of mitochondrial DNA and its phylogenetic implications. Annu Rev Ecol Evol S 36:621-642
4. Barrett RDH, Hebert PDN (2005) Identifying spiders through DNA barcodes. Can J Zool 83:481-491
5. Bolland HR, Gutierrez J, Flechtmann CHW (1998) World catalogue of the spider mite family (Acari: Tetranychidae). Brill, Leiden, Boston, Koln
6. Breeuwer JAJ, Jacobs G (1996) Wolbachia: intracellular manipulators of mite reproduction. Exp Appl Acarol 20:421-434
7. Breeuwer JAJ (1997) Wolbachia and cytoplasmic incompatibility in the spider mites Tetranychus urticae and T. turkestani. Heredity 79:41-47
8. Cruickshank RH (2002) Molecular markers for the phylogenetics of mites and ticks. Syst Appl Acarol 7:3-14
9. Dasmahapatra KK, Mallet J (2006) DNA barcodes: recent successes and future prospects. Heredity 97:254-255
10. Doyle JJ (1991) DNA protocols for plants. In: Hewitt G, Johnson AWB, Young JPW (eds) Molecular techniques in taxonomy. Springer, Berlin
11. Dupont LM (1979) On gene flow between Tetranychus urticae Koch, 1836 and Tetranychus cinnabarinus (Boisduval) Boudreaux, 1956 (Acari: Tetranychidae): synonymy between the two species. Entomol Exp Appl 25:297-303
12. Ehara S (1999) Revision of the spider mite family Tetranychidae of Japan (Acari, Prostigmata). Species Divers 4:63-141
13. Erpenbeck D, Hooper JNA, Worheide G (2006) CO1 phylogenies in diploblasts and the 'Barcoding of Life' - are we sequencing a suboptimal partition? Mol Ecol Notes 6:550-553
14. Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R (1994) DNA primers for amplification of mitochondrial cytochrome C oxidase subunit I form diverse metazoan invertebrates. Molec Mar Biol Biotech 3:294-299
15. Frati F, Simon C, Sullivan J, Swofford DL (1997) Evolution of the mitochondrial cytochrome oxidase II gene in collembola. J Mol Evol 44:145-158
16. Gleeson DM, Rowell DM, Tait NN, Briscoe DA, Higgins AV (1998) Phylogenetic relationships among Onychophora from Australasia inferred from the mitochondrial cytochrome oxidase subunit I gene. Mol Phylogenet Evol 10:237-248
17. Gómez A, Wright PJ, Lunt DH, Cancino JM, Carvalho GR, Hughes RN (2007) Mating trials validate the use of DNA barcoding to reveal cryptic speciation of a marine bryozoan taxon. Proc R Soc B 274:199-207
18. Gotoh T, Tokioka T (1996) Genetic compatibility among diapausing red, non-diapausing red and diapausing green forms of the two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae). Jpn J Ent 64:215-225
19. Gotoh T, Noda H, Hong XY (2003) Wolbachia distribution and cytoplasmic incompatibility based on a survey of 42 spider mite species (Acari: Tetranychidae) in Japan. Heredity 91:208-216
20. Gotoh T, Noda H, Ito S (2006) Cardinium symbionts cause cytoplasmic incompatibility in spider mites. Heredity 98:13-20
21. Hebert PDN, Cywinska A, Ball SL, deWaard JR (2003) Biological identifications through DNA barcodes. Proc R Soc B 270:313-321
22. Hebert PDN, Stoeckle MY, Zemlak TS, Francis CM (2004) Identification of birds through DNA barcodes. Plos Biol 2:1657-1663
23. Hinomoto N, Osakabe M, Gotoh T, Takafuji A (2001) Phylogenetic analysis of green and red forms of the two-spotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae), in Japan, based on mitochondrial cytochrome oxidase subunit I sequences. Appl Entomol Zool 36:459-464
24. Hinomoto N, Takafuji A (2001) Genetic diversity and phylogeny of the Kanzawa spider mite, Tetranychus kanzawai, in Japan. Exp Appl Acarol 25:355-370
25. Hinomoto N, Tran DP, Pham AT, Le TBN, Tajima R, Ohashi K, Osakabe M, Takafuji A (2007) Identification of spider mites (Acari: Tetranychidae) by DNA sequences: a case study in Northern Vietnam. Int J Acarol 33:53-60
26. Hoy MA, Jeyaprakash A (2005) Microbial diversity in the predatory mite Metaseiulus occidentalis (Acari: Phytoseiidae) and its prey, Tetranychus urticae (Acari : Tetranychidae). Biol Control 32:427-441
27. Hurst GDD, Jiggins FM (2005) Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts. Proc R Soc B 272:1525-1534
28. Kress WJ, Wurdack KJ, Zimmer EA, Weigt LA, Janzen DH (2005) Use of DNA barcodes to identify flowering plants. P Natl Acad Sci USA 102:8369-8374
29. Lee ML, Suh SJ, Kwon YJ (1999) Phylogeny and diagnostic markers of six Tetranychus species (Acarina: Tetranychidae) in Korea based on the mitochondrial cytochrome oxidase subunit I. J Asia-Pacific Entomol 2:85-92
30. Lunt DH, Zhang DX, Szymura JM, Hewitt GM (1996) The insect cytochrome oxidase I gene: evolutionary patterns and conserved primers for phylogenetic studies. Insect Mol Biol 5:153-165
31. Monaghan MT, Balke M, Gregory TR, Vogler AP (2005) DNA-based species delineation in tropical beetles using mitochondrial and nuclear markers. Phil Trans R Soc B 360:1925-1933
32. Moritz C, Cicero C (2004) DNA barcoding: promise and pitfalls. Plos Biol 2:1529-1531
33. Navajas M, Gutierrez J, Bonato O, Bolland HR, Mapangoudivassa S (1994) Intraspecific diversity of the cassava green mite Mononycellus progresivus (Acari, Tetranychidae) using comparisons of mitochondrial and nuclear ribosomal DNA-sequences and cross-breeding. Exp Appl Acarol 18:351-360
34. Navajas M, Fournier D, Lagnel J, Gutierrez J, Boursot P (1996a) Mitochondrial COI sequences in mites: evidence for variations in base composition. Insect Mol Biol 5:281-285
35. Navajas M, Gutierrez J, Lagnel J, Boursot P (1996b) Mitochondrial cytochrome oxidase I in tetranychid mites: a comparison between molecular phylogeny and changes of morphological and life history traits. B Entomol Res 86:407-417
36. Navajas M, Gutierrez J, Gotoh T (1997) Convergence of molecular and morphological data reveals phylogenetic information on Tetranychus species and allows the restoration of the genus Amphitetranychus (Acari:Tetranychidae). B Entomol Res 87:283-288
37. Navajas M (1998) Host plant associations in the spider mite Tetranychus urticae (Acari: Tetranychidae): insights from molecular phylogeography. Exp Appl Acarol 22:201-214
38. Navajas M, Lagnel J, Gutierrez J, Boursot P (1998) Species-wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with extensive mitochondrial COI polymorphism. Heredity 80:742-752
39. Navajas M, Fenton B (2000) The application of molecular markers in the study of diversity in acarology: a review. Exp Appl Acarol 24:751-774
40. Navajas M, Boursot P (2003) Nuclear ribosomal DNA monophyly versus mitochondrial DNA polyphyly in two closely related mite species: the influence of life history and molecular drive. Proc R Soc B 270:S124-S127
41. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics 14:817-818
42. Prendini L (2005) Comment on "Identifying spiders through DNA barcodes". Can J Zool 83:498-504
43. Rubinoff D, Cameron S, Will K (2006) Are plant DNA barcodes a search for the Holy Grail? Trends Ecol Evol 21:1-2
44. Schulenburg JHGV, Hurst GDD, Tetzlaff D, Booth GE, Zakharov IA, Majerus MEN (2002) History of infection with different male-killing bacteria in the two-spot ladybird beetle Adalia bipunctata revealed through mitochondrial DNA sequence analysis. Genetics 160:1075-1086
45. Shapiro B, Rambaut A, Drummond AJ (2006) Choosing appropriate substitution models for the phylogenetic analysis of protein-coding sequences. Mol Biol Evol 23:7-9
46. Söller R, Wohltmann A, Witte H, Blohm D (2001) Phylogenetic relationships within terrestrial mites (Acari: Prostigmata, Parasitengona) inferred from comparative DNA sequence analysis of the mitochondrial cytochrome oxidase subunit I gene. Mol Phylogenet Evol 18:47-53
47. Sonnenberg R, Nolte AW, Tautz D (2007) An evaluation of LSU rDNA D1-D2 sequences for their use in species identification. Front Zool 4:6
48. Sullivan J, Abdo Z, Joyce P, Swofford DL (2005) Evaluating the performance of a successive-approximations approach to parameter optimization in maximum-likelihood phylogeny estimation. Mol Biol Evol 22:1386-1392
49. Swofford DL (2002) PAUP*, Phylogenetic Analysis Using Parsimony (*and Other Methods). Sinauer Associates, Sunderland
50. Swofford DL, Sullivan J (2003) Phylogeny inference based on parsimony and other methods using PAUP*. In: Salemi M, Vandamme A-M (eds) The phylogenetic handbook. A practical approach to DNA and protein phylogeny. Cambridge University Press, Cambridge
51. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876-4882
52. Toda S, Osakabe M, Komazaki S (2000) Interspecific diversity of mitochondrial COI sequences in Japanese Panonychus species (Acari: Tetranychidae). Exp Appl Acarol 24:821-829
53. Vala F, Breeuwer JAJ, Sabelis MW (2000) Wolbachia-induced 'hybrid breakdown' in the two-spotted spider mite Tetranychus urticae Koch. Proc R Soc B 267:1931-1937
54. Vogler AP, Monaghan MT (2007) Recent advances in DNA taxonomy. J Zool Syst Evol Res 45:1-10
55. Whitworth TL, Dawson RD, Magalon H, Baudry E (2007) DNA barcoding cannot reliably identify species of the blowfly genus Protocalliphora (Diptera: Calliphoridae). Proc R Soc B 274:1731-1739
56. Will KW, Mishler BD, Wheeler QD (2005) The perils of DNA barcoding and the need for integrative taxonomy. Syst Biol 54:844-851
57. Xia X, Xie Z (2001) DAMBE: software package for data analysis in molecular biology and evolution. J Hered 92:371-373
58. Xie L, Hong XY, Xue XF (2006a) Population genetic structure of the two-spotted spider mite (Acari: Tetranychidae) from China. Ann Entomol Soc Am 99:959-965
59. Xie L, Miao H, Hong XY (2006b) The two-spotted spider mite Tetranychus urticae Koch and the carmine spider mite Tetranychus cinnabarinus (Boisduval) in China mixed in their Wolbachia phylogenetic tree. Zootaxa 1165:33-46
60. Zhang ZQ, Jacobson RJ (2000) Using adult female morphological characters for differentiating Tetranychus urticae complex (Acari: Tetranychidae) from greenhouse tomato crops in UK. Syst Appl Acarol 5:69-76