Application of ITS-2 sequences as markers for identification and phylogenetic inference within the genus Geomylichus (Acari: Listrophoridae)

Experimental and Applied Acarology

Volumn 35, Issue 3, 2005, Pages 223-238

  Vargas, Margarita ^a   García Varela, Martín ^b   Laclette, Juan P ^b   Pérez, Tila M ^c  

^a INSTITUTO POLITÉCNICO NACIONAL   (Mexico)

^b INSTITUTO DE INVESTIGACIONES BIOMÉDICAS   (Mexico)

^c UNIVERSIDAD NACIONAL AUTÓNOMA DE MÉXICO   (Mexico)

Author keywords

Geomylichus; ITS 2; Listrophoridae; Ribosomal DNA

Indexed keywords

IDENTIFICATION METHOD; MITE; MOLECULAR ANALYSIS; PHYLOGENETICS;

ACARI; GEOMYLICHUS; GEOMYLICHUS TEXANUS; LISTROPHORIDAE; PROLISTROPHORUS;

SPACER DNA;

ANIMAL; ARTICLE; CLASSIFICATION; FEMALE; GENETIC MARKER; GENETICS; HISTOLOGY; HOST PARASITE INTERACTION; MEXICO; MITE; PARASITOLOGY; PHYLOGENY; POPULATION DYNAMICS; RODENT; SPECIES DIFFERENCE;

ANIMALS; DNA, INTERGENIC; FEMALE; GENETIC MARKERS; HOST-PARASITE RELATIONS; MEXICO; MITES; PHYLOGENY; POPULATION DYNAMICS; RODENTIA; SPECIES SPECIFICITY;

EID: 17244378403     PISSN: 01688162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10493-004-2761-2     Document Type: Article

References (32)

1. A. Fain 1970 Diagnoses de nouveaux Lobalgides et Listrophorides (Acarina: Sarcoptiformes) Rev. Zool. Bot. Afr. 81 271 300
2. A. Fain M.L. Estebanes 2000 Notes on the fur mites of the genus Geomylichus Fain, 1970 (Acari Astigmata Listrophoridae), with description of a new species from Mexico Bull. S. R. B. E./K. B. V. E. 136 53 59
3. A. Fain O.J. Whitaker Jr. H.H. Thomas 1988 Two new species of Geomylichus Fain, 1970 (Acari: Listrophoridae) from California USA Int. J. Acarol. 14 121 125
4. A. Fain O.J. Whitaker Jr. H.H. Thomas 1991 Two new fur-mites of the genus Geomylichus Fain, 1970 (Acari Listrophoridae) from kangaroo rats, Dipodomys spp., from the USA Int. J. Acarol. 17 175 180
5. A. Fain O.J. Whitaker Jr. T.G. Schwan F.S. Lukoschus 1978 Notes on the genus Geomylichus Fain, 1970 (Astigmata: Listrophoridae) and description of six new species Int. J. Acarol. 4 101 114
6. J. Felsenstein 1981 Evolutionary trees from DNA sequences: a maximum likelihood approach J. Mol. Evol. 17 368 376
7. J. Felsenstein 1999 PHYLYP (Phylogeny inference package), version 3.572 University of Washington Seattle WA USA
8. B. Fenton G. Malloch F. Germa 1998 A study of variation in rDNA ITS regions shows that two haplotypes coexist within a single aphid genome Genome 41 337 345
9. G.N. Fritz J. Conn A. Cockburn J. Seawright 1994 Sequence analysis of the ribosomal DNA internal transcribed spacer 2 from populations of Anopheles nuneztovari (Diptera: Culicidae) Mol. Biol. Evol. 11 406 416
10. M. Hasegawa H. Kishino T. Yano 1985 Dating of the human-ape splitting by a molecular clock of mitochondrial DNA J. Mol. Evol. 22 160 174
11. D.M. Hillis M.T. Dixon 1991 Ribosomal DNA: molecular evolution and phylogenetic inference Q. Rev. Biol. 66 411 453
12. N. Hinomoto A. Takafuji 2001 Genetic diversity and phylogeny of the Kanzawa spider miteTetranychus kanzawaiin Japan Exp. Appl. Acarol. 25 355 370
13. M. Kimura 1980 A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences J. Mol. Evol. 16 111 120
14. G.W. Krantz 1978 A Manual of Acarology, 2nd edn Oregon State University Book Stores Inc. Corvallis, OR, USA
15. S. Kumar K. Tamura I.B. Jakobsen M. Nei 2001 MEGA2: molecular evolutionary genetics analysis software Bioinformatics 17 1244 1245
16. A. Marcilla M.D. Bargues J.M. Ramsey E. Magallon-Gastelum P.M. Salazar-Schettino F. Abad-Franch J.P. Dujardin C.J. Schofield S. Mas-Coma 2001 The ITS-2 of the nuclear rDNA as a molecular marker for populations, species, and phylogenetic relationships in Triatominae (Hemiptera: Reduviidae), vectors of Chagas disease Mol. Phylogenet. Evol. 18 136 142
17. D.K. McLain D.M. Wesson F.H. Collins J.H. Oliver Jr. 1995 Evolution of the rDNA spacer ITS 2, in the ticks Ixodes scapularis I. pacificus (Acari: Ixodidae) Heredity 75 303 319
18. A. Murrell N.J.H. Campbell S.C. Barker 2001 Recurrent gains and losses of large (84-109 bp) repeats in the rDNA internal transcribed spacer 2 (ITS2) of rhipicephaline ticks Insect Mol. Biol. 10 587 596
19. M. Navajas J. Gutierrez M. Williams T. Gotoh 2001 Synonymy between two spider mite species, Tetranychus kanzawai T. hydrangeae (Acari: Tetranychidae), shown by ribosomal ITS2 sequences and cross-breeding experiments Bull. Entomol. Res. 91 117 123
20. M. Navajas J. Lagnel G. Fauvel G. De Moraes 1999 Sequence variation of ribosomal Internal Transcribed Spacers (ITS) in commercially important Phytoseiidae mites Exp. Appl. Acarol. 23 851 859
21. M. Navajas J. Lagnel J. Gutierrez P. Boursot 1998 Species-wide homogeneity of nuclear ribosomal ITS2 sequences in the spider mite Tetranychus urticae contrasts with extensive mitochondrial COI polymorphism Heredity 80 742 752
22. H. Ochs A. Mathis P. Deplazes 1999 Single nucleotide variation in rDNA ITS-2 differentiates Psoroptes isolates from sheep and rabbits from the same geographical area Parasitology 119 419 424
23. S.M. Paskawitz D.M. Wesson F.H. Collins 1993 The internal transcribed spacer of ribosomal DNA in five members of the Anopheles gambiae species complex Insect Mol. Biol. 2 247 257
24. D. Posada K.A. Crandall 1998 Modeltest: testing the model of DNA substitution Bioinformatics 14 817 818
25. F. Rodríguez J.F. Oliver A. Marin J.R. Medina 1990 The general stochastic model of nucleotide substitution J. Theor. Biol. 142 485 501
26. M. Rojas de M.D. Mora J.M. Ubeda C. Cutillas M. Navajas D.C. Guevara 2002 Phylogenetic relationships in rhinonyssid mites (Acari: Rhinonyssidae) based on ribosomal DNA sequences: insights for the discrimination of closely related species Parasitol. Res. 88 675 681
27. D.L. Swofford 2001 PAUP 4.0b10: Phylogenetic analysis using parsimony (and others methods) Sinauer Associates Sunderland MA USA
28. J.D. Thompson D.G. Higgins T.J. Gibson 1994 CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 4673 4680
29. M. Vargas T.M. Pérez O.J. Polaco 1999 The genus Geomylichus Fain (Acari: Listrophoridae) from Mexico with descriptions of four new species Int. J. Acarol. 25 3 12
30. Z. Yang 1994 Estimating the patterns of nucleotides substitution J. Mol. Evol. 39 105 111
31. M. Zahler A. Essig R. Gothe H. Rinder 1998 Genetic evidence suggests that Psoroptes isolates of different phenotypes, host and geographic origins are conspecific Int. J. Parasitol. 28 1713 1719
32. M. Zahler A. Essig R. Gothe H. Rinder 1999 Molecular analyses suggest monospecificity of the genus Sarcoptes (Acari: Sarcoptidae) Int. J. Parasitol. 29 759 766