Structure of an essential bacterial protein YeaZ (TM0874) from Thermotoga maritima at 2.5 Å resolution

Acta Crystallographica Section F: Structural Biology and Crystallization Communications

Volumn 66, Issue 10, 2010, Pages 1230-1236

  Xu, Qingping ^a,b   McMullan, Daniel ^a,c   Jaroszewski, Lukasz ^a,d,e   Krishna, S Sri ^a,d,e   Elsliger, Marc André ^a,f   Yeh, Andrew P ^a,b   Abdubek, Polat ^a,c   Astakhova, Tamara ^a,d   Axelrod, Herbert L ^a,b   Carlton, Dennis ^a,f   Chiu, Hsiu Ju ^a,b   Clayton, Thomas ^a,f   Duan, Lian ^a,d   Feuerhelm, Julie ^a,c   Grant, Joanna ^a,c   Han, Gye Won ^a,f   Jin, Kevin K ^a,b   Klock, Heath E ^a,c   Knuth, Mark W ^a,c   Miller, Mitchell D ^a,b   Morse, Andrew T ^a,d   Nigoghossian, Edward ^a,c   Okach, Linda ^a,c   Oommachen, Silvya ^a,b   Paulsen, Jessica ^a,c   Reyes, Ron ^a,b   Rife, Christopher L ^a,b   Van Den Bedem, Henry ^a,b   Hodgson, Keith O ^a,g   Wooley, John ^a,d   Deacon, Ashley M ^a,b   Godzik, Adam ^a,d,e   Lesley, Scott A ^a,c,f   Wilson, Ian A ^a,f   more..

^a Joint Center for Structural Genomics   (United States)

^b SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

^c GENOMICS INSTITUTE OF THE NOVARTIS RESEARCH FOUNDATION   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e BURNHAM INSTITUTE   (United States)

^f SCRIPPS RESEARCH INSTITUTE   (United States)

^g SLAC NATIONAL ACCELERATOR LABORATORY   (United States)

Author keywords

essential genes; protein complexes; TM0874; YeaZ; YgjD

Indexed keywords

BACTERIAL PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL STRUCTURE; CHEMISTRY; MOLECULAR GENETICS; PROTEIN QUATERNARY STRUCTURE; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT; THERMOTOGA MARITIMA; X RAY CRYSTALLOGRAPHY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CRYSTALLOGRAPHY, X-RAY; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, QUATERNARY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT; THERMOTOGA MARITIMA;

BACTERIA (MICROORGANISMS); THERMOTOGA MARITIMA;

EID: 77958054854     PISSN: 17443091     EISSN: 17443091     Source Type: Journal    
DOI: 10.1107/S1744309109022192     Document Type: Article

References (38)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Nucleic Acids Res. 25, 3389-3402.
2. Andreeva, A., Howorth, D., Brenner, S. E., Hubbard, T. J., Chothia, C. & Murzin, A. G. (2004). Nucleic Acids Res. 32, D226-D229.
3. Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M. & Paciorek, W. (2003). Acta Cryst. D59, 2023-2030.
4. Butland, G., Peregrin-Alvarez, J. M., Li, J., Yang, W., Yang, X., Canadien, V., Starostine, A., Richards, D., Beattie, B., Krogan, N., Davey, M., Parkinson, J., Greenblatt, J. & Emili, A. (2005). Nature (London), 433, 531-537.
5. Cohen, A. E., Ellis, P. J., Miller, M. D., Deacon, A. M. & Phizackerley, R. P. (2002). J. Appl. Cryst. 35, 720-726.
6. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
7. Crooks, G. E., Hon, G., Chandonia, J.M. & Brenner, S. E. (2004). Genome Res. 14, 1188-1190.
8. Cruickshank, D. W. J. (1999). Acta Cryst. D55, 583-601.
9. Downey,M., Houlsworth, R., Maringele, L., Rollie, A., Brehme, M., Galicia, S., Guillard, S., Partington, M., Zubko, M. K., Krogan, N. J., Emili, A., Greenblatt, J. F., Harrington, L., Lydall, D. & Durocher, D. (2006). Cell, 124, 1155-1168.
10. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
11. Gouet, P., Robert, X. & Courcelle, E. (2003). Nucleic Acids Res. 31, 3320-3323.
12. Handford, J. I., Ize, B., Buchanan, G., Butland, G. P., Greenblatt, J., Emili, A. & Palmer, T. (2009). J. Bacteriol., doi:10.1128/JB.00136-09.
13. Hecker, A., Leulliot, N., Gadelle, D., Graille, M., Justome, A., Dorlet, P., Brochier, C., Quevillon-Cheruel, S., Le Cam, E., van Tilbeurgh, H. & Forterre, P. (2007). Nucleic Acids Res. 35, 6042-6051.
14. Hecker, A., Lopreiato, R., Graille,M., Collinet, B., Forterre, P., Libri, D. & van Tilbeurgh, H. (2008). EMBO J. 27, 2340-2351.
15. Holm, L. & Sander, C. (1995). Trends Biochem. Sci. 20, 478-480.
16. Jeudy, S., Stelter, M., Coutard, B., Kahn, R. & Abergel, C. (2005). Acta Cryst. F61, 848-851.
17. Kabsch, W. (1993). J. Appl. Cryst. 26, 795-800.
18. Kabsch, W. & Sander, C. (1983). Biopolymers, 22, 2577-2637.
19. Katoh, K., Kuma, K., Toh, H. & Miyata, T. (2005). Nucleic Acids Res. 33, 511-518.
20. Kisseleva-Romanova, E., Lopreiato, R., Baudin-Baillieu, A., Rousselle, J. C., Ilan, L., Hofmann, K., Namane, A., Mann, C. & Libri, D. (2006). EMBO J. 25, 3576-3585.
21. Kleywegt, G. J. (2000). Acta Cryst. D56, 249-265.
22. Krishna, S. S.,Weekes, D., Bakolitsa, C., Elsliger, M.-A.,Wilson, I. A., Godzik, A. & Wooley, J. (2010). Acta Cryst. F66, 1143-1147.
23. Krissinel, E. & Henrick, K. (2007). J. Mol. Biol. 372, 774-797.
24. Landau, M.,Mayrose, I., Rosenberg, Y., Glaser, F., Martz, E., Pupko, T. & Ben-Tal, N. (2005). Nucleic Acids Res. 33, W299-W302.
25. Lesley, S. A. et al. (2002). Proc. Natl Acad. Sci. USA, 99, 11664-11669.
26. Lovell, S. C., Davis, I. W., Arendall, W. B. III, de Bakker, P. I., Word, J. M., Prisant, M. G., Richardson, J. S. & Richardson, D. C. (2003). Proteins, 50, 437-450.
27. Mao, D. Y. et al. (2008). Mol. Cell, 32, 259-275.
28. Matthews, B. W. (1968). J. Mol. Biol. 33, 491-497.
29. Nichols, C. E., Johnson, C., Lockyer, M., Charles, I. G., Lamb, H. K., Hawkins, A. R. & Stammers, D. K. (2006). Proteins, 64, 111-123.
30. Santarsiero, B. D., Yegian, D. T., Lee, C. C., Spraggon, G., Gu, J., Scheibe, D., Uber, D. C., Cornell, E. W., Nordmeyer, R. A., Kolbe, W. F., Jin, J., Jones, A. L., Jaklevic, J.M., Schultz, P. G. & Stevens, R. C. (2002). J. Appl. Cryst. 35, 278-281.
31. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
32. Terwilliger, T. C. (2003). Acta Cryst. D59, 1174-1182.
33. Thompson, J. D., Higgins, D. G. & Gibson, T. J. (1994). Nucleic Acids Res. 22, 4673-4680.
34. Vaguine, A. A., Richelle, J. & Wodak, S. J. (1999). Acta Cryst. D55, 191-205.
35. Vriend, G. (1990). J. Mol. Graph. 8, 52-56.
36. Winn, M. D., Murshudov, G. N. & Papiz, M. Z. (2003). Methods Enzymol. 374, 300-321.
37. Yang, H., Guranovic, V., Dutta, S., Feng, Z., Berman, H. M. &Westbrook, J. D. (2004). Acta Cryst. D60, 1833-1839.
38. Zhang, R. & Lin, Y. (2009). Nucleic Acids Res. 37, D455-D458.