Genome origins in Leymus (Poaceae: Triticeae): Evidence of maternal and paternal progenitors and implications for reticulate evolution

Plant Systematics and Evolution

Volumn 289, Issue 3, 2010, Pages 165-179

  Zhou, Xincheng ^a   Yang, Xinming ^a   Li, Xiuquan ^a   Li, Lihui ^a  

^a INSTITUTE OF PLANT PROTECTION   (China)

Author keywords

DMC1; Genome origins; Leymus; Psathyrostachys; rbcL; rpoA

Indexed keywords

LEYMUS; LEYMUS CINEREUS; LEYMUS INNOVATUS; LEYMUS TRITICOIDES; POACEAE; PSATHYROSTACHYS; PSATHYROSTACHYS JUNCEA; PSATHYROSTACHYS LANUGINOSA; PSATHYROSTACHYS STOLONIFORMIS; TRITICEAE;

EID: 77957821565     PISSN: 03782697     EISSN: 16156110     Source Type: Journal    
DOI: 10.1007/s00606-010-0341-y     Document Type: Article

References (53)

1. Aagesen L, Petersen G, Seberg O (2005) Sequence length variation, indel costs, and congruence in sensitivity analysis. Cladistics 21: 15-30.
2. Anamthawat-Jónsson K, Bödvarsdóttir SK (2001) Genomic and genetic relationships among species of Leymus (Poaceae: Triticeae) inferred from 18S-26S ribosomal genes. Am J Bot 88: 553-559.
3. Baden C (1991) A taxonomic revision of Psathyrostachys (Poaceae). Nord J Bot 11: 3-26.
4. Belyayev A, Raskina O, Nevo E (2005) Variability of the chromosomal distribution of Ty3-gypsy retrotransposons in the populations of two wild Triticeae species. Cytogenet Genome Res 109: 43-49.
5. Bödvarsdóttir SK, Anamthawat-Jónsson K (2003) Isolation, characterization, and analysis of Leymus-specific DNA sequences. Genome 46: 673-682.
6. Devos KM, Atkinson MD, Chinoy CN, Liu CJ, Gale MD (1992) RFLP-based genetic map of the homoeologous 3 chromosomes of wheat and rye. Theor Appl Genet 83: 931-939.
7. Dewey DR (1970) Genome relations among diploid Elymus junceus and certain tetraploid and octoploid Elymus species. Am J Bot 57: 633-639.
8. 1 hybrids. Bot Gaz 133: 51-57.
9. Dewey DR (1976) The genome constitution and phylogeny of Elymus ambiguus. Am J Bot 63: 626-634.
10. Dewey DR (1984) The genomic system of classification as a guide to intergeneric hybridization with the perennial Triticeae. In: Gustafson JP (ed) Gene manipulation in plant improvement. Plenum, New York, pp 209-280.
11. Doyle JJ, Doyle JL, Rauscher JT, Brown ADH (2003) Diploid and polyploid reticulate evolution throughout the history of the perennial soybeans (Glycine subgenus Glycine). New Phytol 161: 121-132.
12. Dvořák J, Zhang HB (1992) Application of molecular tools for study of the phylogeny of diploid and polyploid taxa in Triticeae. Hereditas 116: 37-42.
13. Fan X, Zhang H, Sha L, Zhang L, Yang R, Ding C, Zhou Y (2007) Phylogenetic analysis among Hystrix, Leymus and its affinitive genera (Poaceae: Triticeae) based on the sequences of a gene encoding plastid acetyl-CoA carboxylase. Plant Sci 172: 701-707.
14. Innan H (2009) Population genetic models of duplicated genes. Genetica 137: 19-37.
15. Jakob SS, Blattner FR (2010) Two extinct diploid progenitors were involved in allopolyploid formation in the Hordeum murinum (Poaceae: Triticeae) taxon complex. Mol Phylog Evol 55: 650-659.
16. Kellogg EA, Appels R, Mason-Gamer RJ (1996) When genes tell different stories: the diploid genera of Triticeae (Gramineae). Syst Bot 21: 321-347.
17. Klimyuk VI, Jones JD (1997) AtDMC1, the Arabidopsis homologue of the yeast DMC1 gene: characterization, transposon-induced allelic variation and meiosis-associated expression. Plant J 11: 1-14.
18. Liu Z, Chen Z, Pan J, Li X, Su M, Wang L, Li H, Liu G (2008) Phylogenetic relationships in Leymus (Poaceae: Triticeae) revealed by the nuclear ribosomal internal transcribed spacer and chloroplast trnL-F sequences. Mol Phylogenet Evol 46: 278-289.
19. Löve Á (1984) Conspectus of the Triticeae. Feddes Repert 95: 425-521.
20. Mason-Gamer RJ (2004) Reticulate evolution, introgression, and intertribal gene capture in an allohexaploid grass. Syst Biol 53: 25-37.
21. Mason-Gamer RJ (2008) Allohexaploidy, introgression, and the complex phylogenetic history of Elymus repens (Poaceae). Mol Phylogenet Evol 47: 598-611.
22. Mason-Gamer RJ, Kellogg EA (1996) Testing for phylogenetic conflict among molecular data sets in the Triticeae (Gramineae). Syst Biol 45: 524-545.
23. Mason-Gamer RJ, Orme NL, Anderson CM (2002) Phylogenetic analysis of North American Elymus and the monogenomic Triticeae (Poaceae) using three chloroplast DNA data sets. Genome 45: 991-1002.
24. Meyerhans A, Vartanian JP, Wain-Hobson S (1990) DNA recombination during PCR. Nucleic Acids Res 18: 1687-1691.
25. Morton BR, Clegg MT (1993) A chloroplast DNA mutational hotspot and gene conversion in a noncoding region near rbcL in the grass family (Poaceae). Curr Genet 24: 357-365.
26. Ogihara Y, Terachi T, Sasakuma T (1991) Molecular analysis of the hot spot region related to length mutations in wheat chloroplast DNAs. I. Nucleotide divergence of genes and intergenic spacer regions located in the hot spot region. Genetics 129: 873-884.
27. Olmstead RG, Palmer JD (1994) Chloroplast DNA systematics: a review of methods and data analysis. Am J Bot 81: 1205-1224.
28. Ørgaard M, Heslop-Harrison JS (1994) Investigations of genome relationships between Leymus, Psathyrostachys and Hordeum inferred by genome DNA: DNA in situ hybridization. Ann Bot 73: 195-203.
29. Petersen G, Seberg O (1997) Phylogenetic analysis of the Triticeae (Poaceae) based on rpoA sequence data. Mol Phylogenet Evol 7: 217-230.
30. Petersen G, Seberg O (2000) Phylogenetic evidence for excision of stowaway miniature inverted-repeat transposable elements in Triticeae (Poaceae). Mol Biol Evol 17: 1589-1596.
31. Petersen G, Seberg O (2003) Phylogenetic analyses of the diploid species of Hordeum (Poaceae) and a revised classification of the genus. Syst Bot 28: 293-306.
32. Petersen G, Seberg O (2008) Phylogenetic relationships of allotetraploid Hordelymus europaeus (L.) Harz (Poaceae: Triticeae). Pl Syst Evol 273: 87-95.
33. Petersen G, Seberg O, Baden C (2004) A phylogenetic analysis of the genus Psathyrostachys (Poaceae) based on one nuclear gene, three plastid genes, and morphology. Pl Syst Evol 249: 99-110.
34. Petersen G, Seberg O, Yde M, Berthelsen K (2006) Phylogenetic relationships of Triticum and Aegilops and evidence for the origin of the A, B, and D genomes of common wheat (Triticum aestivum). Mol Phylogenet Evol 39: 70-82.
35. Pond SLK, Frost SDW, Muse MV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676-679.
36. Sha L, Yang R, Fan X, Wang X, Zhou Y (2008) Phylogenetic analysis of Leymus (Poaceae: Triticeae) inferred from nuclear rDNA ITS sequences. Biochem Genet 46: 605-619.
37. Sha L, Fan X, Yang R, Kang H, Ding C, Zhang L, Zheng Y, Zhou Y (2010) Phylogenetic relationships between Hystrix and its closely related genera (Triticeae: Poaceae) based on nuclear Acc1, DMC1 and chloroplast trnL-F sequences. Mol Phylogenet Evol 54: 327-335.
38. Sharp PJ, Kreis M, Shewry PR, Gale MD (1988) Location of β-amylase sequences in wheat and its relatives. Theor Appl Genet 75: 286-290.
39. Soltis DE, Soltis PS (1999) Polyploidy: recurrent formation and genome evolution. Trends Ecol Evol 14: 348-352.
40. Soltis DE, Soltis PS, Tate JA (2003) Advances in the study of polyploidy since Plant Speciation. New Phytol 161: 173-191.
41. Sun GL, Yen C, Yang JL (1994) The genome constitution of Leymus aemulis (Poaceae). Hereditas 121: 191-195.
42. Sun GL, Yen C, Yang JL (1995) Morphology and cytology of intergeneric hybrids involving Leymus multicaulis (Poaceae). Pl Syst Evol 194: 83-91.
43. Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
44. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
45. Wagner A, Blackstone N, Cartwright P, Dick M, Misof B, Snow P, Wagner GP, Bartels J, Murtha M, Pendleton J (1994) Surveys of gene families using polymerase chain reaction: PCR selection and PCR drift. Syst Biol 43: 250-261.
46. Wang RR-C, Hsiao C (1984) Morphology and cytology of interspecific hybrid of Leymus mollis. J Heredity 75: 488-492.
47. Wang RR-C, Jensen KB (1994) Absence of the J genome in Leymus species (Poaceae: Triticeae): evidence from DNA hybridization and meiotic pairing. Genome 37: 231-235.
48. Wang RR-C, Bothmer V, Dvořák J, Fedak G, Linde-Laursen I, Muramatsu M (1994) Genome symbols in the Triticeae (Poaceae). In: Wang RR-C, Jensen KB, Jaussi C (eds) Proceedings of the 2nd International Triticeae Symposium. Utah State University Press, Logan, pp 29-34.
49. Wang RR-C, Zhang JY, Lee BS, Jensen KB, Kishii M, Tsujimoto H (2006) Variations in abundance of 2 repetitive sequences in Leymus and Psathyrostachys species. Genome 49: 511-519.
50. Wendel JF (2000) Genome evolution in polyploids. Plant Mol Biol 42: 225-249.
51. Wendel JF, Stewart JM, Rettig JH (1991) Molecular evidence for homoploid reticulate evolution among Australian species of Gossypium. Evolution 45: 694-711.
52. Yen C, Yang JL, Baum BR (2009) Synopsis of Leymus Hochst. (Triticeae: Poaceae). J Syst Evol 47: 67-86.
53. Zhang HB, Dvořák J (1991) The genome origin of tetraploid species of Leymus (Poaceae: Triticeae) inferred from variation in repeated nucleotide sequences. Am J Bot 78: 871-884.