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Volumn 56, Issue 5, 2003, Pages 517-526

Frequent mitochondrial gene rearrangements at the hymenopteran nad3-nad5 junction

Author keywords

Inversion; Okazaki fragment; Recombination; Shuffling; Slipped strand mispairing; Synchronous replication; Tandem repeat; Translocation; tRNA

Indexed keywords

ARTICLE; GENE; GENE DUPLICATION; GENE LOSS; GENE REARRANGEMENT; GENETIC RECOMBINATION; HYMENOPTERA; MITOCHONDRIAL GENETICS; NAD3 GENE; NAD5 GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; WASP;

EID: 0037403369     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-002-2420-3     Document Type: Article
Times cited : (120)

References (49)
  • 1
    • 0032770572 scopus 로고    scopus 로고
    • Gene order breakpoint evidence in animal mitochondrial phylogeny
    • Blanchette M, Kunisawa T, Sankoff D (1999) Gene order breakpoint evidence in animal mitochondrial phylogeny. J Mol Evol 9:193-203
    • (1999) J Mol Evol , vol.9 , pp. 193-203
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 2
    • 0031769998 scopus 로고    scopus 로고
    • Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool
    • Boore JL, Brown WM (1998) Big trees from little genomes: Mitochondrial gene order as a phylogenetic tool. Curr Opin Genet Dev 8:668-674
    • (1998) Curr Opin Genet Dev , vol.8 , pp. 668-674
    • Boore, J.L.1    Brown, W.M.2
  • 3
    • 0028976102 scopus 로고
    • Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements
    • Boore JL, Collins TM, Stanton D, Daehler LL, Brown WM (1995) Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Nature 376:163-165
    • (1995) Nature , vol.376 , pp. 163-165
    • Boore, J.L.1    Collins, T.M.2    Stanton, D.3    Daehler, L.L.4    Brown, W.M.5
  • 4
    • 0032537194 scopus 로고    scopus 로고
    • Gene translocation links insects and crustaceans
    • Boore JL, Lavrov DV, Brown WM (1998) Gene translocation links insects and crustaceans. Nature 392:667-668
    • (1998) Nature , vol.392 , pp. 667-668
    • Boore, J.L.1    Lavrov, D.V.2    Brown, W.M.3
  • 5
    • 0032976068 scopus 로고    scopus 로고
    • The novel mitochondrial gene arrangement of the cattle tick. Boophilus microplus: Fivefold tandem repetition of a coding region
    • Campbell NJH, Barker SC (1999) The novel mitochondrial gene arrangement of the cattle tick. Boophilus microplus: Fivefold tandem repetition of a coding region. Mol Biol Evol 16:732-740
    • (1999) Mol Biol Evol , vol.16 , pp. 732-740
    • Campbell, N.J.H.1    Barker, S.C.2
  • 6
    • 0023231203 scopus 로고
    • Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes
    • Cantatore P, Gadaleta MN, Roberti M, Saccone C, Wilson AC (1987) Duplication and remoulding of tRNA genes during the evolutionary rearrangement of mitochondrial genomes. Nature 329:853-855
    • (1987) Nature , vol.329 , pp. 853-855
    • Cantatore, P.1    Gadaleta, M.N.2    Roberti, M.3    Saccone, C.4    Wilson, A.C.5
  • 7
    • 0035986877 scopus 로고    scopus 로고
    • Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera
    • Castro LR, Austin AD, Dowton M (2002) Contrasting rates of mitochondrial molecular evolution in parasitic Diptera and Hymenoptera. Mol Biol Evol 19:1100-1113
    • (2002) Mol Biol Evol , vol.19 , pp. 1100-1113
    • Castro, L.R.1    Austin, A.D.2    Dowton, M.3
  • 8
    • 0022271984 scopus 로고
    • The mitochondrial DNA molecule of Drosophila yakuba: Nucleotide sequence, gene organization, and genetic code
    • Clary DO, Wolstenholme DR (1985) The mitochondrial DNA molecule of Drosophila yakuba: Nucleotide sequence, gene organization, and genetic code. J Mol Evol 22:252-271
    • (1985) J Mol Evol , vol.22 , pp. 252-271
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 9
    • 0027398565 scopus 로고
    • The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization
    • Crozier RH, Crozier YC (1993) The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization. Genetics 133:97-117
    • (1993) Genetics , vol.133 , pp. 97-117
    • Crozier, R.H.1    Crozier, Y.C.2
  • 10
    • 0033088439 scopus 로고    scopus 로고
    • Relationships among the cyclostome braconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement
    • Dowton M (1999) Relationships among the cyclostome braconid (Hymenoptera: Braconidae) subfamilies inferred from a mitochondrial tRNA gene rearrangement. Mol Phylogenet Evol 11:283-287
    • (1999) Mol Phylogenet Evol , vol.11 , pp. 283-287
    • Dowton, M.1
  • 11
    • 0027941868 scopus 로고
    • Molecular phylogeny of the insect order Hymenoptera: Apocritan relationships
    • Dowton M, Austin AD (1994) Molecular phylogeny of the insect order Hymenoptera: Apocritan relationships. Proc Natl Acad Sci USA 91:9911-9915
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9911-9915
    • Dowton, M.1    Austin, A.D.2
  • 12
    • 0033062252 scopus 로고    scopus 로고
    • Evolutionary dynamics of a mitochondrial rearrangement "hotspot" in the Hymenoptera
    • Dowton M, Austin AD (1999) Evolutionary dynamics of a mitochondrial rearrangement "hotspot" in the Hymenoptera. Mol Biol Evol 16:298-309
    • (1999) Mol Biol Evol , vol.16 , pp. 298-309
    • Dowton, M.1    Austin, A.D.2
  • 13
    • 0035358769 scopus 로고    scopus 로고
    • Intramitochondrial recombination - Is it why some mitochondrial genes sleep around?
    • Dowton M, Campbell NJH (2001) Intramitochondrial recombination - is it why some mitochondrial genes sleep around? Trends Ecol Evol 16:269-271
    • (2001) Trends Ecol Evol , vol.16 , pp. 269-271
    • Dowton, M.1    Campbell, N.J.H.2
  • 14
    • 0036144965 scopus 로고    scopus 로고
    • Simultaneous molecular and morphological analysis of braconid relationships (Insecta: Hymenoptera: Braconidae) indicates independent mt-tRNA gene inversions within a single wasp family
    • Dowton M, Belshaw R, Austin AD, Quicke DLJ (2002) Simultaneous molecular and morphological analysis of braconid relationships (Insecta: Hymenoptera: Braconidae) indicates independent mt-tRNA gene inversions within a single wasp family. J Mol Evol 54:210-226
    • (2002) J Mol Evol , vol.54 , pp. 210-226
    • Dowton, M.1    Belshaw, R.2    Austin, A.D.3    Quicke, D.L.J.4
  • 15
    • 0029619268 scopus 로고
    • The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome
    • Flook PK, Rowell CHF, Gellissen G (1995) The sequence, organization, and evolution of the Locusta migratoria mitochondrial genome. J Mol Evol 41:928-941
    • (1995) J Mol Evol , vol.41 , pp. 928-941
    • Flook, P.K.1    Rowell, C.H.F.2    Gellissen, G.3
  • 16
    • 0019332324 scopus 로고
    • Origin and direction of replication in mitochondrial DNA molecules from the genus Drosophila
    • Goddard JM, Wolstenholme DR (1980) Origin and direction of replication in mitochondrial DNA molecules from the genus Drosophila. Nucleic Acids Res 8:741-757
    • (1980) Nucleic Acids Res , vol.8 , pp. 741-757
    • Goddard, J.M.1    Wolstenholme, D.R.2
  • 17
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
    • (1999) Nucleic Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 18
    • 0030721538 scopus 로고    scopus 로고
    • Transposition and site-specific recombination - Adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangements
    • Hallet B, Sherratt DJ (1997) Transposition and site-specific recombination - adapting DNA cut-and-paste mechanisms to a variety of genetic rearrangements. FEMS Microbiol Rev 21:157-178
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 157-178
    • Hallet, B.1    Sherratt, D.J.2
  • 19
    • 0030811485 scopus 로고    scopus 로고
    • Behaviour of a population of partially duplicated mitochondrial DNA molecules in cell culture: Segregation, maintenance and recombination dependent upon nuclear background
    • Holt IJ, Dunbar DR, Jacobs HT (1997) Behaviour of a population of partially duplicated mitochondrial DNA molecules in cell culture: Segregation, maintenance and recombination dependent upon nuclear background. Hum Mol Genet 6:1251-1260
    • (1997) Hum Mol Genet , vol.6 , pp. 1251-1260
    • Holt, I.J.1    Dunbar, D.R.2    Jacobs, H.T.3
  • 20
    • 0034598918 scopus 로고    scopus 로고
    • Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA
    • Holt IJ, Lorimer HE, Jacobs HT (2000) Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA. Cell 100:515-524
    • (2000) Cell , vol.100 , pp. 515-524
    • Holt, I.J.1    Lorimer, H.E.2    Jacobs, H.T.3
  • 21
    • 0035049036 scopus 로고    scopus 로고
    • Complete mitochondrial DNA sequence of Conger myriaster (Teleostei: Anguilliformes): Novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform faimilies
    • Inoue JG, Miya M, Tsukamoto K, Nishida M (2001) Complete mitochondrial DNA sequence of Conger myriaster (Teleostei: Anguilliformes): Novel gene order for vertebrate mitochondrial genomes and the phylogenetic implications for anguilliform faimilies. J Mol Evol 52:311-320
    • (2001) J Mol Evol , vol.52 , pp. 311-320
    • Inoue, J.G.1    Miya, M.2    Tsukamoto, K.3    Nishida, M.4
  • 22
    • 0035942104 scopus 로고    scopus 로고
    • The 3′ → 5′ of exonuclease DNA polymerase δ can substitute for the 5′ flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability
    • Jin YH, Obert R, Burgers PMJ, Kunkel TA, Resnick MA, Gordenin DA (2001) The 3′ → 5′ of exonuclease DNA polymerase δ can substitute for the 5′ flap endonuclease Rad27/Fen1 in processing Okazaki fragments and preventing genome instability. Proc Natl Acad Sci USA 98:5122-5127
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 5122-5127
    • Jin, Y.H.1    Obert, R.2    Burgers, P.M.J.3    Kunkel, T.A.4    Resnick, M.A.5    Gordenin, D.A.6
  • 24
    • 0035195043 scopus 로고    scopus 로고
    • Prominent mitochondrial DNA recombination intermediates in human heart muscle
    • Kajander OA, Karhunen PJ, Holt IJ, Jacobs HT (2001) Prominent mitochondrial DNA recombination intermediates in human heart muscle. EMBO Rep 2:1007-1012
    • (2001) EMBO Rep , vol.2 , pp. 1007-1012
    • Kajander, O.A.1    Karhunen, P.J.2    Holt, I.J.3    Jacobs, H.T.4
  • 25
    • 0029096503 scopus 로고
    • Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers
    • Kumazawa Y, Nishida M (1995) Variations in mitochondrial tRNA gene organization of reptiles as phylogenetic markers. Mol Biol Evol 12:759-772
    • (1995) Mol Biol Evol , vol.12 , pp. 759-772
    • Kumazawa, Y.1    Nishida, M.2
  • 26
    • 0029909927 scopus 로고    scopus 로고
    • Gene rearrangements in snake mitochondrial genomes: Highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster
    • Kumazawa Y, Ota H, Nishida M, Ozawa T (1996) Gene rearrangements in snake mitochondrial genomes: Highly concerted evolution of control-region-like sequences duplicated and inserted into a tRNA gene cluster. Mol Biol Evol 13:1242-1254
    • (1996) Mol Biol Evol , vol.13 , pp. 1242-1254
    • Kumazawa, Y.1    Ota, H.2    Nishida, M.3    Ozawa, T.4
  • 27
    • 0034748612 scopus 로고    scopus 로고
    • Recombination in animal mitochondrial DNA: Evidence from published sequences
    • Ladoukakis ED, Zouros E (2001) Recombination in animal mitochondrial DNA: Evidence from published sequences. Mol Biol Evol 18:2127-2131
    • (2001) Mol Biol Evol , vol.18 , pp. 2127-2131
    • Ladoukakis, E.D.1    Zouros, E.2
  • 28
    • 0036146407 scopus 로고    scopus 로고
    • Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and nonrandom loss
    • Lavrov DV, Boore JL, Brown WM (2002) Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: Duplication and nonrandom loss. Mol Biol Evol 19:163-169
    • (2002) Mol Biol Evol , vol.19 , pp. 163-169
    • Lavrov, D.V.1    Boore, J.L.2    Brown, W.M.3
  • 29
    • 0030854739 scopus 로고    scopus 로고
    • tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence
    • Lowe TM, Eddy SR (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955-964
    • (1997) Nucleic Acids Res , vol.25 , pp. 955-964
    • Lowe, T.M.1    Eddy, S.R.2
  • 30
    • 0030953174 scopus 로고    scopus 로고
    • Animal mitochondrial DNA recombination
    • Lunt DH, Hyman BC (1997) Animal mitochondrial DNA recombination. Nature 387:247
    • (1997) Nature , vol.387 , pp. 247
    • Lunt, D.H.1    Hyman, B.C.2
  • 31
    • 0031012089 scopus 로고    scopus 로고
    • Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome
    • Macey JR, Larson A, Ananjeva NB, Fang Z, Papenfuss TJ (1997) Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol Biol Evol 14:91-104
    • (1997) Mol Biol Evol , vol.14 , pp. 91-104
    • Macey, J.R.1    Larson, A.2    Ananjeva, N.B.3    Fang, Z.4    Papenfuss, T.J.5
  • 32
    • 0027728777 scopus 로고
    • The mitochondrial genome of Anopheles quadrimaculatus, species A: Complete nucleotide sequence and gene organization
    • Mitchell SE, Cockburn AF, Seawright JA (1993) The mitochondrial genome of Anopheles quadrimaculatus, species A: complete nucleotide sequence and gene organization. Genome 36:1058-1073
    • (1993) Genome , vol.36 , pp. 1058-1073
    • Mitchell, S.E.1    Cockburn, A.F.2    Seawright, J.A.3
  • 33
    • 0023480940 scopus 로고
    • Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
    • Moritz C, Dowling TE, Brown WM (1987) Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Annu Rev Ecol Syst 18:269-292
    • (1987) Annu Rev Ecol Syst , vol.18 , pp. 269-292
    • Moritz, C.1    Dowling, T.E.2    Brown, W.M.3
  • 36
    • 0034932095 scopus 로고    scopus 로고
    • The complete mitochondrial DNA sequence of the basal hexapol Tetrodontophora bielanensis: Evidence for heteroplasmy and tRNA translocations
    • Nardi F, Carapelli A, Fanciulli PP, Dallai R, Frati F (2001) The complete mitochondrial DNA sequence of the basal hexapol Tetrodontophora bielanensis: Evidence for heteroplasmy and tRNA translocations. Mol Biol Evol 18:1293-1304
    • (2001) Mol Biol Evol , vol.18 , pp. 1293-1304
    • Nardi, F.1    Carapelli, A.2    Fanciulli, P.P.3    Dallai, R.4    Frati, F.5
  • 37
    • 0019444843 scopus 로고
    • tRNA punctuation model of RNA processing in human mitochondria
    • Ojala D, Montoya J, Attardi G (1981) tRNA punctuation model of RNA processing in human mitochondria. Nature 290:470-474
    • (1981) Nature , vol.290 , pp. 470-474
    • Ojala, D.1    Montoya, J.2    Attardi, G.3
  • 38
    • 0027403570 scopus 로고
    • Families with mtDNA re-arrangements can be detected in patients with mtDNA deletions: Duplications may be a transient intermediate form
    • Poulton J, Deadman ME, Bindoff L, Morten K, Land J, Brown G (1993) Families with mtDNA re-arrangements can be detected in patients with mtDNA deletions: Duplications may be a transient intermediate form. Hum Mol Genet 2:23-30
    • (1993) Hum Mol Genet , vol.2 , pp. 23-30
    • Poulton, J.1    Deadman, M.E.2    Bindoff, L.3    Morten, K.4    Land, J.5    Brown, G.6
  • 40
    • 0033793019 scopus 로고    scopus 로고
    • Rare genomic changes as a tool for phylogenetics
    • Rokas A, Holland PWH (2000) Rare genomic changes as a tool for phylogenetics. Trends Ecol Evol 15:454-459
    • (2000) Trends Ecol Evol , vol.15 , pp. 454-459
    • Rokas, A.1    Holland, P.W.H.2
  • 41
    • 0035038162 scopus 로고    scopus 로고
    • Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera)
    • Shao R, Campbell NJH, Barker SC (2001a) Numerous gene rearrangements in the mitochondrial genome of the wallaby louse, Heterodoxus macropus (Phthiraptera). Mol Biol Evol 18:858-865
    • (2001) Mol Biol Evol , vol.18 , pp. 858-865
    • Shao, R.1    Campbell, N.J.H.2    Barker, S.C.3
  • 42
    • 0034883153 scopus 로고    scopus 로고
    • Increased rate of gene rearrangement in the mitochondrial genomes of insects in three hemipteroid orders
    • Shao R, Campbell NJH, Schmidt ER, Barker SC (2001b) Increased rate of gene rearrangement in the mitochondrial genomes of insects in three hemipteroid orders. Mol Biol Evol 18:1828-1832
    • (2001) Mol Biol Evol , vol.18 , pp. 1828-1832
    • Shao, R.1    Campbell, N.J.H.2    Schmidt, E.R.3    Barker, S.C.4
  • 43
    • 0028251187 scopus 로고
    • Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers
    • Simon C, Frati F, Beckenbach A, Crespi B, Liu H, Rook P (1994) Evolution, weighting, and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann Entomol Soc Am 87:1-51
    • (1994) Ann Entomol Soc Am , vol.87 , pp. 1-51
    • Simon, C.1    Frati, F.2    Beckenbach, A.3    Crespi, B.4    Liu, H.5    Rook, P.6
  • 44
    • 0033928582 scopus 로고    scopus 로고
    • Maintenance of human mitochondrial DNAs in long-term cultured transmitochondrial cell lines
    • Tang Y, Manfredi G, Hirano M, Schon EA (2000) Maintenance of human mitochondrial DNAs in long-term cultured transmitochondrial cell lines. Mol Biol Cell 11:2349-2358
    • (2000) Mol Biol Cell , vol.11 , pp. 2349-2358
    • Tang, Y.1    Manfredi, G.2    Hirano, M.3    Schon, E.A.4
  • 45
    • 0031442653 scopus 로고    scopus 로고
    • A novel mutation avoidance mechanism dependent on S-Cerevisiae Rad27 is distinct from DNA mismatch repair
    • Tishkoff DX, Filosi N, Gaida GM, Kolodner RD (1997) A novel mutation avoidance mechanism dependent on S-Cerevisiae Rad27 is distinct from DNA mismatch repair. Cell 88:253-263
    • (1997) Cell , vol.88 , pp. 253-263
    • Tishkoff, D.X.1    Filosi, N.2    Gaida, G.M.3    Kolodner, R.D.4
  • 47
    • 0035315522 scopus 로고    scopus 로고
    • Phylogeny and classification of the extant basal lineages of the Hymenoptera (Insecta)
    • Vilhelmsen L (2001) Phylogeny and classification of the extant basal lineages of the Hymenoptera (Insecta). Zool J Linn Soc 131:339-442
    • (2001) Zool J Linn Soc , vol.131 , pp. 339-442
    • Vilhelmsen, L.1
  • 49
    • 0030952282 scopus 로고    scopus 로고
    • Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies
    • Zhang D-X, Hewitt GM (1997) Insect mitochondrial control region: A review of its structure, evolution and usefulness in evolutionary studies. Biochem Syst Ecol 25:99-120
    • (1997) Biochem Syst Ecol , vol.25 , pp. 99-120
    • Zhang, D.-X.1    Hewitt, G.M.2


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