Large-scale identification of leaf senescence-associated genes

Plant Journal

Volumn 36, Issue 5, 2003, Pages 629-642

  Gepstein, Shimon ^a   Sabehi, Gazalah ^a   Carp, Marie Jeanne ^a   Hajouj, Taleb ^a   Nesher, Mizied Falah Orna ^a   Yariv, Inbal ^a   Dor, Chen ^a   Bassani, Michal ^a  

^a TECHNION ISRAEL INSTITUTE OF TECHNOLOGY   (Israel)

Author keywords

Arabidopsis; Genomics; Leaf senescence; Senescence associated genes; Subtraction suppression hybridization

Indexed keywords

BIOCHEMISTRY; CLONING; DEGRADATION; DETOXIFICATION; DNA; GENES; MACROMOLECULES; METABOLITES;

HYBRIDIZATION;

PLANTS (BOTANY);

AGING; ARABIDOPSIS; ARABIDOPSIS PROTEINS; CLONING, MOLECULAR; ENZYMES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; PLANT LEAVES;

ARABIDOPSIS; ARABIDOPSIS THALIANA; EUKARYOTA;

EID: 0345531087     PISSN: 09607412     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-313X.2003.01908.x     Document Type: Article

References (71)

1. Bhalerao, R., Keskitalo, J., Sterky, F. et al. (2003) Gene expression in autumn leaves. Plant Physiol. 131, 430-442.
2. Binyamin, L., Falah, M., Portnoy, V., Soudri, E. and Gepstein, S. (2001) The early light-induced protein is also produced during leaf senescence of Nicotiana tabacum. Planta, 211, 591-597.
3. Blein, J.P., Coutos-Thevenot, P., Marion, D. and Ponchet, M. (2002) From elicitins to lipid-transfer proteins: a new insight in cell signaling involved in plant defence mechanisms. Trends Plant Sci. 7, 293-296.
4. Braun, V. and Braun, M. (2002) Active transport of iron and siderophore antibiotics. Curr. Opin. Microbiol. 5, 194-201.
5. Buchanan-Wollaston, V. (1994) Isolation of cDNA clones for genes that are expressed during leaf senescence in Brassica napus. Plant Physiol. 105, 839-846.
6. Buchanan-Wollaston, V. (1997) The molecular biology of leaf senescence. J. Exp. Bot. 48, 181-199.
7. Buchanan-Wollaston, V. and Ainsworth, C. (1997) Leaf senescence in Brassica napus: cloning of senescence related genes by subtractive hybridisation. Plant Mol. Biol. 33, 821-834.
8. Buchanan-Wollaston, V., Earl, S., Harrison, E., Mathas, E., Navabpour, S., Page, T. and Pink, D. (2003) The molecular analysis of leaf senescence - a genomics approach. Plant Biotechnol. J. 1, 3-22.
9. Chubatsu, L.S. and Meneghini, R. (1993) Metallothionein protects DNA from oxidative damage. Biochem. J. 291 (1), 193-198.
10. Dal, N., Schaffer, A., Petreikov, M., Shahak, Y., Giller, Y., Ratner, K., Levine, A. and Granot, D. (1999) Overexpression of Arabidopsis hexokinase in tomato plants inhibits growth, reduces photosynthesis, and induces rapid senescence. Plant Cell, 11, 1253-1266.
11. Dangl, J., Dietrich, R. and Thomas, H. (2000) Senescence and programmed cell death. In Biochemistry and Molecular Biology of Plants (Buchanan, B., Gruissemand, W. and Jones, R., eds). Rockville, Maryland: American Society of Plant Physiologists, pp. 1044-1100.
12. Diatchenko, L., Lau, Y.F., Campbell, A.P. et al. (1996) Suppression subtractive hybridization: a method for generating differentially regulated or tissue-specific cDNA probes and libraries. Proc. Natl. Acad. Sci. USA, 93, 6025-6030.
13. Diatchenko, L., Lukyanov, S., Lau, Y.F. and Siebert, P.D. (1999) Suppression subtractive hybridization: a versatile method for identifying differentially expressed genes. Meth. Enzymol. 303, 349-380.
14. Duelling, J.H., Walker, J.M., Friedman, E.M., Thompson, A.R. and Vierstra, R.D. (2002) The APG8/12-activating enzyme APG7 is required for proper nutrient recycling and senescence in Arabidopsis thaliana. J. Biol. Chem. 277, 33105-33114.
15. Drake, R., John, I., Farrel, A., Cooper, W., Schuch, W. and Grierson, D. (1996) Isolation and analysis of cDNAs encoding tomato cysteine proteases expressed during leaf senescence. Plant Mol. Biol. 30, 755-767.
16. Eriksson, S., Andreasson, E., Ekbom, B., Graner, G., Pontoppidan, B., Taipalensuu, J., Zhang, J., Rask, L. and Meijer, J. (2002) Complex formation of myrosinase isoenzymes in oilseed rape seeds are dependent on the presence of myrosinase-binding proteins. Plant Physiol. 129, 1592-1599.
17. Eulgem, T., Rushton, P.J., Robatzek, S. and Somssich, I.E. (2000) The WRKY superfamily of plant transcription factors. Trends Plant Sci. 5, 199-206.
18. Fan, L., Zheng, S. and Wang, X. (1997) Antisense suppression of phospholipase D alpha retards abscisic acid-and ethylene-promoted senescence of postharvest Arabidopsls leaves. Plant Cell, 9, 2183-2196.
19. Fan, L., Zheng, S., Cui, D. and Wang, X. (1999) Subcellular distribution and tissue expression of phospholipase Dalpha, Dbeta, and Dgamma in Arabidopsis. Plant Physiol. 119, 1371-1378.
20. Fujiki, Y., Yoshikawa, Y., Sato, T., Inada, N., Ito, M., Nishida, I. and Watanabe, A. (2001) Dark-inducible genes from Arabidopsis thaliana are associated with leaf senescence and repressed by sugars. Physiol. Plant. 111, 345-352.
21. Gan, S. and Amasino, R.M. (1995) Inhibition of leaf senescence by autoregulated production of cytokinin. Science, 270, 1986-1988.
22. Gan, S. and Amasino, R.M. (1997) Making sense of senescence. Plant Physiol. 113, 313-319.
23. Gepstein, S. (1988) Photosynthesis in senescence and aging in plants. In Senescence and aging in plants (Nooden, L. and Leopold, A.C., eds). San Diego: Academic Press, pp. 85-109.
24. Gepstein, S. and Thimann, K.V. (1981) The role of ethylene in the senescence of oat leaves. Plant Physiol. 68, 349-354.
25. Guterman, A., Hajouj, T. and Gepstein, S. (2003) Senescence-associated mRNAs that may participate in signal transduction and protein trafficking. Physiol. Plant. 118, 439-446.
26. Hajouj, T., Michelis, R. and Gepstein, S. (2000) Cloning and characterization of a receptor-like protein kinase gene associated with senescence. Plant Physiol. 124, 1305-1314.
27. Hanaoka, H., Noda, T., Shirano, Y., Kato, T., Hayashi, H., Shibata, D., Tabata, S. and Ohsumi, Y. (2002) Leaf senescence and starvation-induced chlorosis are accelerated by the disruption of an Arabidopsis autophagy gene. Plant Physiol. 129, 1181-1193.
28. Hanfrey, C., Fife, M. and Buchanan-Wollaston, V. (1996) Leaf senescence in Brassica napus: expression of genes encoding pathogenesis-related proteins. Plant Mol. Biol. 30, 597-609.
29. He, Y. and Can, S. (2002) A gene encoding an acyl hydrolase is involved in leaf senescence in Arabidopsis. Plant Cell, 14, 805-815.
30. He, Y., Tang, W., Swain, J.D., Green, A.L, Jack, T.P. and Gan, S. (2001) Networking senescence-regulating pathways by using Arabidopsis enhancer trap lines. Plant Physiol. 126, 707-716.
31. He, Y., Fukushige, H., Hildebrand, D.F. and Gan, S. (2002) Evidence supporting a role of jasmonic acid in Arabidopsis leaf senescence. Plant Physiol. 128, 876-884.
32. Himelblau, E. and Amasino, R.M. (2000) Delivering copper within plant cells. Curr. Opin. Plant Biol. 3, 205-210.
33. Hinderhofer, K. and Zentgraf, U. (2001) Identification of a transcription factor specifically expressed at the onset of leaf senescence. Planta, 213, 469-473.
34. Hong, Y., Wang, T.W., Hudak, K.A., Schade, F., Froese, C.D. and Thompson, J.E. (2000) An ethylene-induced cDNA encoding a lipase expressed at the onset of senescence. Proc. Natl. Acad. Sci. USA, 97, 8717-8722.
35. Ingvardsen, C.V. and Veierskov, B. (2001) Ubiquitin and proteasome-dependent proteolysis in plants. Physiol. Plant. 112, 451-459.
36. Jacob-Wilk, D., Holland, D., Goldschmidt, E.E., Riov, J. and Eyal, Y. (1999) Chlorophyll breakdown by chlorophyllase: isolation and functional expression of the chlase 1 gene from ethylene-treated citrus fruit and its regulation during development. Plant Cell, 20, 653-661.
37. John, I., Hackett, R., Cooper, W., Drake, R., Farrell, A. and Grierson, D. (1997) Cloning and characterization of tomato leaf senescence-related cDNAs. Plant Mol. Biol. 33, 641-651.
38. Kawaoka, A.E. and Ebinuma, H. (2001) Transcriptional control of lignin biosynthesis by tobacco Lim protein. Phytochemistry, 57, 1149-1157.
39. Keppler, D., Walter, R., Perez, C. and Sierra, F. (2000) Increased expression of mature cathepsin b in aging rat liver. Cell Tissue Res. 302, 181-188.
40. Kinoshita, T., Yamada, K., Hiraiwa, N., Kondo, M., Nishimura, M. and Hara-Nishimura, I. (1999) Vacuolar processing enzyme is up-regulated in the lytic vacuoles of vegetative tissues during senescence and under various stressed conditions. Plant J. 19, 43-53.
41. Kohler, C., Merkle, T., Roby, D. and Neuhaus, G. (2001) Developmentally regulated expression of a cyclic nucleotide-gated ion channel from Arabidopsis indicates its involvement in programmed cell death. Planta, 213, 327-332.
42. Lee, R.H., Wang, C.H., Huang, L.T. and Chen, S.C. (2001) Leaf senescence in rice plants: cloning and characterization of senescence up-regulated genes. J. Exp. Bot. 52, 1117-1121.
43. Lers, A., Lomaniec, E., Burd, S. and Khalchitski, A. (2001) The characterization of lenuc1, a nuclease associated with leaf senescence of tomato. Physiol. Plant. 112, 176-182.
44. Lohman, K.N., Gan, S., John, M.C. and Amasino, R.M. (1994) Molecular analysis of natural leaf senescence in Arabidopsis thaliana. Physiol. Plant. 92, 322-328.
45. Lotocki, G. and Keane, R.W. (2002) Inhibitors of apoptosis proteins in injury and disease. IUBMB Life, 54, 231-240.
46. Meyer Jr., R.C., Goldsbrough, P.B. and Woodson, W.R. (1991) An ethylene-responsive flower senescence-related gene from carnation encodes a protein homologous to glutathione S-transferases. Plant Mol. Biol. 17, 277-281.
47. Mira, H., Martinez, N. and Penarrubia, L. (2002) Expression of a vegetative-storage-protein gene from Arabidopsis is regulated by copper, senescence and ozone. Planta, 214, 939-946.
48. Mundel, C., Baltz, R., Eliasson, A., Bronner, R., Grass, N., Krauter, R., Evrard, J.L. and Steinmetz, A. (2000) A Lim-domain protein from sunflower is localized to the cytoplasm and/or nucleus in a wide variety of tissues and is associated with the phragmoplast in dividing cells. Plant Mol. Biol. 42, 291-302.
49. Nakabayashi, K., Ito, M., Kiyosue, T., Shinozaki, K. and Watanabe, A. (1999) Identification of CIp genes expressed in senescing Arabidopsis leaves. Plant Cell Physiol. 40, 504-514.
50. Nam, H.G. (1997) The molecular genetic analysis of leaf senescence. Curr. Opin. Biotechnol. 8, 200-207.
51. Nooden, L.D. and Penney, J.P. (2001) Correlative controls of senescence and plant death in Arabidopsis thaliana (Brassicaceae). J. Exp. Bot. 52, 2151-2159.
52. Obergon, P., Martin, R., Sanz, A. and Castresana, C. (2001) Activation of defense-related genes during senescence: a correlation between gene expression and cellular damage. Plant Mol. Biol. 46, 67-77.
53. Park, J.H., Oh, S.A., Kim, Y.H., Woo, H.R. and Nam, H.G. (1998) Differential expression of senescence-associated mRNAs during leaf senescence induced by different senescence-inducing factors in Arabidopsis. Plant Mol. Biol. 37, 445-454.
54. del Pozo, J.C., Allona, I., Rubio, V., Leyva, A., de la Pena, A., Aragoncillo, C. and Paz-Ares, J. (1999) A type 5 acid phosphatase gene from Arabidopsis thaliana is induced by phosphate starvation and by some other types of phosphate mobilising/oxidative stress conditions. Plant J. 19, 579-589.
55. Quirino, B.F., Normanly, J. and Amasino, R.M. (1999) Diverse range of gene activity during Arabidopsis thaliana leaf senescence includes pathogen-independent induction of defense-related genes. Plant Mol. Biol. 40, 267-278.
56. Quinno, B.F., Noh, Y.S., Himelblau, E. and Amasino, R.M. (2000) Molecular aspects of leaf senescence. Trends Plant Sci. 5, 278-282.
57. Robatzek, S. and Somssich, I.E. (2002) Targets of AtWRKY6 regulation during plant senescence and pathogen defense. Genes Dev. 16, 1139-1149.
58. Rossato, L., MacDuff, J.H., Laine, P., Le Deunff, E. and Ourry, A. (2002) Nitrogen storage and remobilization in Brassica napus L. during the growth cycle: effects of methyl jasmonate on nitrate uptake, senescence, growth, and VSP accumulation. J. Exp. Bot. 53, 1131-1141.
59. Rubinstein, B. (2000) Regulation of cell death in flower petals. Plant Mol. Biol. 44, 303-318.
60. Ryu, S. and Wang, X. (1995) Expression of phospholipase D during castor bean leaf senescence. Plant Physiol. 108, 713-719.
61. Smart, C.M. (1994) Gene expression during leaf senescence. New Phytol. 126, 419-448.
62. Thomas, H., Wagstaff, C. and Stead, A.D. (2003) Defining senescence and death. J. Exp. Bot. 54, 1127-1132.
63. Thompson, J.E., Froese, C.D., Madey, E., Smith, M.D. and Hong, Y. (1998) Lipid metabolism during plant senescence. Prog. Lipid Res. 37, 119-141.
64. Thompson, J., Taylor, C. and Wang, T.W. (2000) Altered membrane lipase expression delays leaf senescence. Biochem. Soc. Trans. 28, 775-777.
65. Watanabe, A., Hamada, K., Yokoi, H. and Wantanabe, A. (1994) Biphasic and differential expression of cytosolic glutamine synthetase genes of radish during seed germination and senescence of cotyledons. Plant Mol. biol. 26, 1807-1817.
66. Weaver, L.M., Can, S., Quirino, B. and Amasino, R.M. (1998) A comparison of the expression patterns of several senescence-associated genes in response to stress and hormone treatment. Plant Mol. Biol. 37, 455-469.
67. Woo, H.R., Chung, K.M., Park, J.H., Oh, S.A., Ahn, T., Hong, S.H., Jang, S.K. and Nam, H.G. (2001) Ore9, an F-box protein that regulates leaf senescence in Arabidopsis. Plant Cell, 13, 1779-1790.
68. Yang, T. and Poovaiah, B.W. (2002) A calmodulin-binding/ CGCG box DNA-binding protein family involved in multiple signaling pathways in plants. J. Biol. Chem. 277, 45049-45058.
69. Yoshida, K. (2003) Molecular regulation of leaf senescence. Curr. Opin. Plant Biol. 6, 79-84.
70. Yoshida, S., Ito, M., Nishida, I. and Watanabe, A. (2001) Isolation and RNA gel blot analysis of genes that could serve as potential molecular markers for leaf senescence in Arabidopsis thaliana. Plant Cell Physiol. 42, 170-178.
71. Yoshida, S., Ito, M., Callis, J., Nishida, I. and Watanabe, A. (2002) A delayed leaf senescence mutant is defective in arginyl-tRNA: protein arginyltransferase, a component of the N-end rule pathway in Arabidopsis. Plant J. 32, 129-137.