-
3
-
-
0035976575
-
Prostaglandins and leukotrienes: Advances in eicosanoid biology
-
Funk, C. D. Prostaglandins and leukotrienes: advances in eicosanoid biology Science 2001, 294, 1871-5
-
(2001)
Science
, vol.294
, pp. 1871-1875
-
-
Funk, C.D.1
-
5
-
-
33750941731
-
2: A key regulator of inflammatory signalling and a connector to fibrosis development in atherosclerosis
-
DOI 10.1016/j.bbalip.2006.06.003, PII S1388198106001843
-
2: a key regulator of inflammatory signalling and a connector to fibrosis development in atherosclerosis Biochim. Biophys. Acta 2006, 1761, 1309-16 (Pubitemid 44738702)
-
(2006)
Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids
, vol.1761
, Issue.11
, pp. 1309-1316
-
-
Oestvang, J.1
Johansen, B.2
-
6
-
-
58749083360
-
Leukotriene signaling in atherosclerosis and ischemia
-
Back, M. Leukotriene signaling in atherosclerosis and ischemia Cardiovasc. Drugs Ther. 2009, 23, 41-8
-
(2009)
Cardiovasc. Drugs Ther.
, vol.23
, pp. 41-48
-
-
Back, M.1
-
7
-
-
4344706187
-
The ins and outs of lysophosphatidic acid signaling
-
Moolenaar, W. H.; van Meeteren, L. A.; Giepmans, B. N. The ins and outs of lysophosphatidic acid signaling Bioessays 2004, 26, 870-81
-
(2004)
Bioessays
, vol.26
, pp. 870-881
-
-
Moolenaar, W.H.1
Van Meeteren, L.A.2
Giepmans, B.N.3
-
8
-
-
0034739443
-
Do membrane-bound enzymes access their substrates from the membrane or aqueous phase: Interfacial versus non-interfacial enzymes
-
Gelb, M. H.; Min, J. H.; Jain, M. K. Do membrane-bound enzymes access their substrates from the membrane or aqueous phase: interfacial versus non-interfacial enzymes Biochim. Biophys. Acta 2000, 1488, 20-7
-
(2000)
Biochim. Biophys. Acta
, vol.1488
, pp. 20-27
-
-
Gelb, M.H.1
Min, J.H.2
Jain, M.K.3
-
9
-
-
45749116608
-
Chemically induced dimerization of human nonpancreatic secretory phospholipase A2 by bis-indole derivatives
-
DOI 10.1021/jm7010707
-
2 by bis-indole derivatives J. Med. Chem. 2008, 51, 3360-6 (Pubitemid 351874994)
-
(2008)
Journal of Medicinal Chemistry
, vol.51
, Issue.12
, pp. 3360-3366
-
-
Zhou, L.1
Fang, C.2
Wei, P.3
Liu, S.4
Liu, Y.5
Lai, L.6
-
14
-
-
0034704143
-
2
-
DOI 10.1074/jbc.C000671200
-
2 J. Biol. Chem. 2000, 275, 39823-6 (Pubitemid 32064600)
-
(2000)
Journal of Biological Chemistry
, vol.275
, Issue.51
, pp. 39823-39826
-
-
Gelb, M.H.1
Valentin, E.2
Ghomashchi, F.3
Lazdunski, M.4
Lambeau, G.5
-
16
-
-
0024564475
-
2
-
2 J. Biol. Chem. 1989, 264, 5768-75 (Pubitemid 19098041)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.10
, pp. 5768-5775
-
-
Kramer, R.M.1
Hession, C.2
Johansen, B.3
Hayes, G.4
McGray, P.5
Chow, E.P.6
Tizard, R.7
Pepinsky, R.B.8
-
17
-
-
0024554009
-
2 present in rheumatoid arthritic synovial fluid
-
2 present in rheumatoid arthritic synovial fluid J. Biol. Chem. 1989, 264, 5335-8 (Pubitemid 19097981)
-
(1989)
Journal of Biological Chemistry
, vol.264
, Issue.10
, pp. 5335-5338
-
-
Seilhamer, J.J.1
Pruzanski, W.2
Vadas, P.3
Plant, S.4
Miller, J.A.5
Kloss, J.6
Johnson, L.K.7
-
18
-
-
0033615737
-
2: Cloning, tissue distribution, and functional expression of two novel mouse group II enzymes
-
2. Cloning, tissue distribution, and functional expression of two novel mouse group II enzymes J. Biol. Chem. 1999, 274, 31195-202 (Pubitemid 129501566)
-
(1999)
Journal of Biological Chemistry
, vol.274
, Issue.44
, pp. 31195-31202
-
-
Valentin, E.1
Ghomashchi, F.2
Gelb, M.H.3
Lazdunski, M.4
Lambeau, G.5
-
20
-
-
0025649161
-
2
-
2 Science 1990, 250, 1541-6 (Pubitemid 120034360)
-
(1990)
Science
, vol.250
, Issue.4987
, pp. 1541-1546
-
-
Scott, D.L.1
White, S.P.2
Otwinowski, Z.3
Yuan, W.4
Gelb, M.H.5
Sigler, P.B.6
-
21
-
-
0026342821
-
2 from inflammatory exudate
-
2 from inflammatory exudate Science 1991, 254, 1007-10
-
(1991)
Science
, vol.254
, pp. 1007-1010
-
-
Scott, D.L.1
White, S.P.2
Browning, J.L.3
Rosa, J.J.4
Gelb, M.H.5
Sigler, P.B.6
-
22
-
-
0025882982
-
2 at 2.2 Å resolution
-
2 at 2.2 A resolution Nature 1991, 352, 79-82 (Pubitemid 21896703)
-
(1991)
Nature
, vol.352
, Issue.6330
, pp. 79-82
-
-
Wery, J.P.1
Schevitz, R.W.2
Clawson, D.K.3
Bobbitt, J.L.4
Dow, E.R.5
Gamboa, G.6
Goodson Jr., T.7
Hermann, R.B.8
Kramer, R.M.9
McClure, D.B.10
Mihelich, E.D.11
Putnam, J.E.12
Sharp, J.D.13
Stark, D.H.14
Teater, C.15
Warrick, M.W.16
Jones, N.D.17
-
23
-
-
77950916360
-
2 inhibitors based on docking calculations by modifying the pharmacophore segments of the FPL67047XX inhibitor
-
2 inhibitors based on docking calculations by modifying the pharmacophore segments of the FPL67047XX inhibitor J. Comput.-Aided Mol. Des. 2010, 24, 107-15
-
(2010)
J. Comput.-Aided Mol. Des.
, vol.24
, pp. 107-115
-
-
Mouchlis, V.D.1
Mavromoustakos, T.M.2
Kokotos, G.3
-
24
-
-
68149156019
-
Multiple-docking and affinity fingerprint methods for protein classification and inhibitors selection
-
Li, B.; Liu, Z.; Zhang, L. Multiple-docking and affinity fingerprint methods for protein classification and inhibitors selection J. Chem. Inf. Model. 2009, 49, 1725-33
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1725-1733
-
-
Li, B.1
Liu, Z.2
Zhang, L.3
-
25
-
-
0030747281
-
2 inhibited by amide-type substrate analogues
-
DOI 10.1016/S0167-4838(97)00041-1, PII S0167483897000411
-
2 inhibited by amide-type substrate analogues Biochim. Biophys. Acta 1997, 1340, 178-86 (Pubitemid 27301423)
-
(1997)
Biochimica et Biophysica Acta - Protein Structure and Molecular Enzymology
, vol.1340
, Issue.2
, pp. 178-186
-
-
Tomoo, K.1
Yamane, A.2
Ishida, T.3
Fujii, S.4
Ikeda, K.5
Iwama, S.6
Katsumura, S.7
Sumiya, S.8
Miyagawa, H.9
Kitamura, K.10
-
27
-
-
0030892498
-
2 inhibitors
-
DOI 10.1021/jm9601617
-
2 inhibitors J. Med. Chem. 1997, 40, 1136-48 (Pubitemid 27149267)
-
(1997)
Journal of Medicinal Chemistry
, vol.40
, Issue.7
, pp. 1136-1148
-
-
Ortiz, A.R.1
Pastor, M.2
Palomer, A.3
Cruciani, G.4
Gago, F.5
Wade, R.C.6
-
28
-
-
0029000922
-
Prediction of drug binding affinities by comparative binding energy analysis
-
Ortiz, A. R.; Pisabarro, M. T.; Gago, F.; Wade, R. C. Prediction of drug binding affinities by comparative binding energy analysis J. Med. Chem. 1995, 38, 2681-91
-
(1995)
J. Med. Chem.
, vol.38
, pp. 2681-2691
-
-
Ortiz, A.R.1
Pisabarro, M.T.2
Gago, F.3
Wade, R.C.4
-
29
-
-
73649118166
-
2 inhibitors as potential therapeutic agents for the treatment of inflammatory diseases
-
2 inhibitors as potential therapeutic agents for the treatment of inflammatory diseases Expert Opin. Ther. Pat. 2010, 20, 1-18
-
(2010)
Expert Opin. Ther. Pat.
, vol.20
, pp. 1-18
-
-
Magrioti, V.1
Kokotos, G.2
-
34
-
-
0001016942
-
Structure-Based Molecular Design
-
Kuntz, I. D.; Meng, E. C.; Shoichet, B. K. Structure-Based Molecular Design Acc. Chem. Res. 2002, 27, 117-123
-
(2002)
Acc. Chem. Res.
, vol.27
, pp. 117-123
-
-
Kuntz, I.D.1
Meng, E.C.2
Shoichet, B.K.3
-
35
-
-
65549168271
-
Docking-based virtual screening: Recent developments
-
Tuccinardi, T. Docking-based virtual screening: recent developments Comb. Chem. High Throughput Screening 2009, 12, 303-14
-
(2009)
Comb. Chem. High Throughput Screening
, vol.12
, pp. 303-314
-
-
Tuccinardi, T.1
-
36
-
-
0036606483
-
Principles of docking: An overview of search algorithms and a guide to scoring functions
-
DOI 10.1002/prot.10115
-
Halperin, I.; Ma, B.; Wolfson, H.; Nussinov, R. Principles of docking: An overview of search algorithms and a guide to scoring functions Proteins 2002, 47, 409-43 (Pubitemid 34614722)
-
(2002)
Proteins: Structure, Function and Genetics
, vol.47
, Issue.4
, pp. 409-443
-
-
Halperin, I.1
Ma, B.2
Wolfson, H.3
Nussinov, R.4
-
37
-
-
0036520840
-
A review of protein-small molecule docking methods
-
Taylor, R. D.; Jewsbury, P. J.; Essex, J. W. A review of protein-small molecule docking methods J. Comput.-Aided Mol. Des. 2002, 16, 151-66
-
(2002)
J. Comput.-Aided Mol. Des.
, vol.16
, pp. 151-166
-
-
Taylor, R.D.1
Jewsbury, P.J.2
Essex, J.W.3
-
38
-
-
0029240364
-
Predicting ligand binding to proteins by affinity fingerprinting
-
Kauvar, L. M.; Higgins, D. L.; Villar, H. O.; Sportsman, J. R.; Engqvist-Goldstein, A.; Bukar, R.; Bauer, K. E.; Dilley, H.; Rocke, D. M. Predicting ligand binding to proteins by affinity fingerprinting Chem. Biol. 1995, 2, 107-18
-
(1995)
Chem. Biol.
, vol.2
, pp. 107-118
-
-
Kauvar, L.M.1
Higgins, D.L.2
Villar, H.O.3
Sportsman, J.R.4
Engqvist-Goldstein, A.5
Bukar, R.6
Bauer, K.E.7
Dilley, H.8
Rocke, D.M.9
-
39
-
-
0023751431
-
Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins
-
Cramer III, R. D.; Patterson, D. E.; Bunce, J. D. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins J. Am. Chem. Soc. 1988, 110, 5959-5967
-
(1988)
J. Am. Chem. Soc.
, vol.110
, pp. 5959-5967
-
-
Cramer III, R.D.1
Patterson, D.E.2
Bunce, J.D.3
-
40
-
-
1542613782
-
2 by indole analogues: A structure-guided study
-
2 by indole analogues: a structure-guided study Bioorg. Med. Chem. 2004, 12, 1737-49
-
(2004)
Bioorg. Med. Chem.
, vol.12
, pp. 1737-1749
-
-
Smart, B.P.1
Pan, Y.H.2
Weeks, A.K.3
Bollinger, J.G.4
Bahnson, B.J.5
Gelb, M.H.6
-
41
-
-
77957242321
-
-
version 5.5; Schrödinger, LLC: New York
-
Glide, version 5.5; Schrödinger, LLC: New York, 2009.
-
(2009)
Glide
-
-
-
42
-
-
12144289984
-
Glide: A New Approach for Rapid, Accurate Docking and Scoring. 1. Method and Assessment of Docking Accuracy
-
DOI 10.1021/jm0306430
-
Friesner, R. A.; Banks, J. L.; Murphy, R. B.; Halgren, T. A.; Klicic, J. J.; Mainz, D. T.; Repasky, M. P.; Knoll, E. H.; Shelley, M.; Perry, J. K.; Shaw, D. E.; Francis, P.; Shenkin, P. S. Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy J. Med. Chem. 2004, 47, 1739-49 (Pubitemid 38380917)
-
(2004)
Journal of Medicinal Chemistry
, vol.47
, Issue.7
, pp. 1739-1749
-
-
Friesner, R.A.1
Banks, J.L.2
Murphy, R.B.3
Halgren, T.A.4
Klicic, J.J.5
Mainz, D.T.6
Repasky, M.P.7
Knoll, E.H.8
Shelley, M.9
Perry, J.K.10
Shaw, D.E.11
Francis, P.12
Shenkin, P.S.13
-
43
-
-
1642310340
-
Glide: A new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening
-
Halgren, T. A.; Murphy, R. B.; Friesner, R. A.; Beard, H. S.; Frye, L. L.; Pollard, W. T.; Banks, J. L. Glide: a new approach for rapid, accurate docking and scoring. 2. Enrichment factors in database screening J. Med. Chem. 2004, 47, 1750-9
-
(2004)
J. Med. Chem.
, vol.47
, pp. 1750-1759
-
-
Halgren, T.A.1
Murphy, R.B.2
Friesner, R.A.3
Beard, H.S.4
Frye, L.L.5
Pollard, W.T.6
Banks, J.L.7
-
44
-
-
33750124980
-
Extra precision glide: Docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes
-
Friesner, R. A.; Murphy, R. B.; Repasky, M. P.; Frye, L. L.; Greenwood, J. R.; Halgren, T. A.; Sanschagrin, P. C.; Mainz, D. T. Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes J. Med. Chem. 2006, 49, 6177-96
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6177-6196
-
-
Friesner, R.A.1
Murphy, R.B.2
Repasky, M.P.3
Frye, L.L.4
Greenwood, J.R.5
Halgren, T.A.6
Sanschagrin, P.C.7
Mainz, D.T.8
-
45
-
-
0028997717
-
2
-
2 Nat. Struct. Biol. 1995, 2, 458-65
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 458-465
-
-
Schevitz, R.W.1
Bach, N.J.2
Carlson, D.G.3
Chirgadze, N.Y.4
Clawson, D.K.5
Dillard, R.D.6
Draheim, S.E.7
Hartley, L.W.8
Jones, N.D.9
Mihelich, E.D.10
Olkowski, J.L.11
Snyder, D.W.12
Sommers, C.13
Wery, J.-P.14
-
46
-
-
0029662266
-
2 and a highly potent inhibitor (FPL67047XX)
-
DOI 10.1021/jm960502g
-
2 and a highly potent inhibitor (FPL67047XX) J. Med. Chem. 1996, 39, 3878-81 (Pubitemid 26327424)
-
(1996)
Journal of Medicinal Chemistry
, vol.39
, Issue.20
, pp. 3878-3881
-
-
Cha, S.-S.1
Lee, D.2
Adams, J.3
Kurdyla, J.T.4
Jones, C.S.5
Marshall, L.A.6
Bolognese, B.7
Abdel-Meguid, S.S.8
Oh, B.-H.9
-
47
-
-
0037416464
-
2 (IIa) with antiinflammatory activity
-
2 (IIa) with antiinflammatory activity ChemBioChem 2003, 4, 181-185 (Pubitemid 36343173)
-
(2003)
ChemBioChem
, vol.4
, Issue.2-3
, pp. 181-185
-
-
Hansford, K.A.1
Reid, R.C.2
Clark, C.I.3
Tyndall, J.D.A.4
Whitehouse, M.W.5
Guthrie, T.6
McGeary, R.P.7
Schafer, K.8
Martin, J.L.9
Fairlie, D.P.10
-
48
-
-
77957234295
-
-
version 9.0; Schrödinger, LLC: New York
-
Maestro, version 9.0; Schrödinger, LLC: New York, 2009.
-
(2009)
Maestro
-
-
-
49
-
-
77957243080
-
-
Epik version 2.0, Impact version 5.5, Prime version 2.1; Schrödinger, LLC: New York
-
Schrödinger Suite 2009 Protein Preparation Wizard, Epik version 2.0, Impact version 5.5, Prime version 2.1; Schrödinger, LLC: New York, 2009.
-
(2009)
Schrödinger Suite 2009 Protein Preparation Wizard
-
-
-
50
-
-
77957224032
-
-
version 2.0; Schrödinger, LLC: New York
-
Epik, version 2.0; Schrödinger, LLC: New York, 2009.
-
(2009)
Epik
-
-
-
51
-
-
37749011993
-
Epik: A software program for pKa prediction and protonation state generation for drug-like molecules
-
Shelley, J. C.; Cholleti, A.; Frye, L. L.; Greenwood, J. R.; Timlin, M. R.; Uchimaya, M. Epik: a software program for pKa prediction and protonation state generation for drug-like molecules J. Comput.-Aided Mol. Des. 2007, 21, 681-91
-
(2007)
J. Comput.-Aided Mol. Des.
, vol.21
, pp. 681-691
-
-
Shelley, J.C.1
Cholleti, A.2
Frye, L.L.3
Greenwood, J.R.4
Timlin, M.R.5
Uchimaya, M.6
-
52
-
-
84984672981
-
-
version 9.7; Schrödinger, LLC: New York
-
MacroModel, version 9.7; Schrödinger, LLC: New York, 2009.
-
(2009)
MacroModel
-
-
-
53
-
-
0035913529
-
Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides
-
DOI 10.1021/jp003919d
-
Kaminski, G. A.; Friesner, R. A.; Tirado-Rives, J.; Jorgensen, W. L. Evaluation and reparametrization of the OPLS-AA force field for proteins via comparison with accurate quantum chemical calculations on peptides J. Phys. Chem. B 2001, 105, 6474-6487 (Pubitemid 35339015)
-
(2001)
Journal of Physical Chemistry B
, vol.105
, Issue.28
, pp. 6474-6487
-
-
Kaminski, G.A.1
Friesner, R.A.2
Tirado-Rives, J.3
Jorgensen, W.L.4
-
55
-
-
0344778061
-
Semianalytical treatment of solvation for molecular mechanics and dynamics
-
Still, W. C.; Tempczyk, A.; Hawley, R. C.; Hendrickson, T. Semianalytical treatment of solvation for molecular mechanics and dynamics J. Am. Chem. Soc. 1990, 112, 6127-6129
-
(1990)
J. Am. Chem. Soc.
, vol.112
, pp. 6127-6129
-
-
Still, W.C.1
Tempczyk, A.2
Hawley, R.C.3
Hendrickson, T.4
-
56
-
-
77957220438
-
-
version 2.3; Schrödinger, LLC: New York
-
LigPrep, version 2.3; Schrödinger, LLC: New York, 2009.
-
(2009)
LigPrep
-
-
-
57
-
-
0031226772
-
Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes
-
Eldridge, M. D.; Murray, C. W.; Auton, T. R.; Paolini, G. V.; Mee, R. P. Empirical scoring functions: I. The development of a fast empirical scoring function to estimate the binding affinity of ligands in receptor complexes J. Comput.-Aided Mol. Des. 1997, 11, 425-45
-
(1997)
J. Comput.-Aided Mol. Des.
, vol.11
, pp. 425-445
-
-
Eldridge, M.D.1
Murray, C.W.2
Auton, T.R.3
Paolini, G.V.4
Mee, R.P.5
-
58
-
-
49149147973
-
Iterative partial equalization of orbital electronegativity-a rapid access to atomic charges
-
Gasteiger, J.; Marsili, M. Iterative partial equalization of orbital electronegativity-a rapid access to atomic charges Tetrahedron 1980, 36, 3219-3228
-
(1980)
Tetrahedron
, vol.36
, pp. 3219-3228
-
-
Gasteiger, J.1
Marsili, M.2
-
59
-
-
33751578897
-
A brief review and table of semiempirical parameters used in the Hueckel molecular orbital method
-
Purcell, W. P.; Singer, J. A. A brief review and table of semiempirical parameters used in the Hueckel molecular orbital method J. Chem. Eng. Data 1967, 12, 235-246
-
(1967)
J. Chem. Eng. Data
, vol.12
, pp. 235-246
-
-
Purcell, W.P.1
Singer, J.A.2
-
60
-
-
77957238378
-
-
version 8.0; Tripos Inc.: St. Louis, MO
-
SYBYL/QSAR and COMFA, version 8.0; Tripos Inc.: St. Louis, MO, 2007.
-
(2007)
SYBYL/QSAR and COMFA
-
-
-
61
-
-
84988115618
-
Validation of the general purpose tripos 5.2 force field
-
Clark, M.; Cramer, D. R., III; Van Opdenbosch, N. Validation of the general purpose tripos 5.2 force field J. Comput. Chem. 1989, 10, 982-1012
-
(1989)
J. Comput. Chem.
, vol.10
, pp. 982-1012
-
-
Clark, M.1
Cramer III, D.R.2
Van Opdenbosch, N.3
-
62
-
-
0000629975
-
Cross-validatory choice and assessment of statistical predictions
-
Stone, M. Cross-validatory choice and assessment of statistical predictions J. Roy. Stat. Soc. B Stat. Meth. 1974, 36, 111-147
-
(1974)
J. Roy. Stat. Soc. B Stat. Meth.
, vol.36
, pp. 111-147
-
-
Stone, M.1
-
63
-
-
84987100711
-
Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR Studies
-
Cramer, R. D., III; Bunce, J. D.; Patterson, D. E.; Frank, I. E. Crossvalidation, bootstrapping, and partial least squares compared with multiple regression in conventional QSAR Studies Quant. Struct.-Act. Relat. 1988, 7, 18-25
-
(1988)
Quant. Struct.-Act. Relat.
, vol.7
, pp. 18-25
-
-
Cramer III, R.D.1
Bunce, J.D.2
Patterson, D.E.3
Frank, I.E.4
-
65
-
-
0022419375
-
Aromatic-aromatic interaction: A mechanism of protein structure stabilization
-
Burley, S. K.; Petsko, G. A. Aromatic-aromatic interaction: a mechanism of protein structure stabilization Science 1985, 229, 23-8
-
(1985)
Science
, vol.229
, pp. 23-28
-
-
Burley, S.K.1
Petsko, G.A.2
-
66
-
-
0025878347
-
π-π Interactions: The geometry and energetics of phenylalanine-phenylalanine interactions in proteins
-
Hunter, C. A.; Singh, J.; Thornton, J. M. Pi-pi interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins J. Mol. Biol. 1991, 218, 837-46 (Pubitemid 121003380)
-
(1991)
Journal of Molecular Biology
, vol.218
, Issue.4
, pp. 837-846
-
-
Hunter, C.A.1
Singh, J.2
Thornton, J.M.3
|