Functional analysis of SlEZ1 a tomato Enhancer of zeste (E(Z)) gene demonstrates a role in flower development

Plant Molecular Biology

Volumn 74, Issue 3, 2010, Pages 201-213

  Kit, A How ^a   Boureau, L ^a   Stammitti Bert, L ^a   Rolin, D ^a   Teyssier, E ^a   Gallusci, P ^a  

^a UNIVERSITÉ DE BORDEAUX   (France)

Author keywords

Enhancer of zeste; Epigenetic; Flower; Fruit; Polycomb; Tomato

Indexed keywords

ISOPROTEIN; MESSENGER RNA; VEGETABLE PROTEIN;

ACTIVE TRANSPORT; AMINO ACID SEQUENCE; ARTICLE; CLASSIFICATION; FLOWER; FRUIT; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; PHYLOGENY; PHYSIOLOGY; PLANT GENOME; PLANT LEAF; RNA INTERFERENCE; TIME; TOMATO;

ACTIVE TRANSPORT, CELL NUCLEUS; AMINO ACID SEQUENCE; CLONING, MOLECULAR; FLOWERS; FRUIT; GENE EXPRESSION REGULATION, PLANT; GENOME, PLANT; LYCOPERSICON ESCULENTUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT LEAVES; PLANT PROTEINS; PROTEIN ISOFORMS; RNA INTERFERENCE; RNA, MESSENGER; TIME FACTORS;

ARABIDOPSIS; ARABIDOPSIS THALIANA; LYCOPERSICON ESCULENTUM;

EID: 77956650965     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-010-9657-9     Document Type: Article

References (52)

1. Aasland R, Francis Stewart Francis Stewart A, Gibson T (1996) The SANT domain: a putative DNA-binding domain in the SWI-SNF and ADA complexes, the transcriptional corepressor N-CoR and TFIIIB. Trends Biochem Sci 21: 87-88.
2. Alba R, Payton P, Fei Z, McQuinn R, Debbie P, Martin GB, Tanksley SD, Giovannoni JJ (2005) Transcriptome and selected metabolite analyses reveal multiple points of ethylene control during tomato fruit development. Plant Cell 17: 2954-2965.
3. Baroux C, Pien S, Grossniklaus U (2007) Chromatin modification and remodeling during early seed development. Curr Opin Genet Dev 17: 473-479.
4. Barrero LS, Cong B, Wu F, Tanksley S (2006) Developmental characterization of the fasciated locus and mapping of Arabidopsis candidate genes involved in the control of floral meristem size and carpel number in tomato. Genome 49: 991-1006.
5. Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB (2001) The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes. Nucl Acids Res 29: 4319-4333.
6. Benvenuto G, Formiggini F, Laflamme P, Malakhov M, Bowler C (2002) The Photomorphogenesis regulator DET1 binds the amino-terminal tail of histone H2B in a nucleosome context. Curr Biol 12: 1529-1534.
7. Bisbis B, Delmas F, Joubes J, Sicard A, Hernould M, Inze D, Mouras A, Chevalier C (2006) Cyclin-dependent kinase (CDK) inhibitors regulate the CDK-cyclin complex activities in endoreduplicating cells of developing tomato fruit. J Biol Chem 281: 7374-7383.
8. Caro E, Castellano MM, Gutierrez C (2007) A chromatin link that couples cell division to root epidermis patterning in Arabidopsis. Nature 447: 213-217.
9. Carrari F, Baxter C, Usadel B, Urbanczyk-Wochniak E, Zanor M-I, Nunes-Nesi A, Nikiforova V, Centero D, Ratzka A, Pauly M, Sweetlove LJ, Fernie AR (2006) Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behavior. Plant Physiol 142: 1380-1396.
10. Causse M, Duffe P, Gomez MC, Buret M, Damidaux R, Zamir D, Gur A, Chevalier C, Lemaire-Chamley M, Rothan C (2004) A genetic map of candidate genes and QTLs involved in tomato fruit size and composition. J Exp Bot 55: 1671-1685.
11. Chanvivattana Y, Bishopp A, Schubert D, Stock C, Moon Y-H, Sung ZR, Goodrich J (2004) Interaction of Polycomb-group proteins controlling flowering in Arabidopsis. Development 131: 5263-5276.
12. Chinnusamy V, Zhu J-K (2009) Epigenetic regulation of stress responses in plants. Curr Opin Plant Biol 12: 133-139.
13. Cong B, Barrero LS, Tanksley SD (2008) Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication. Nature Genet 40: 800-804.
14. Cui H, Benfey PN (2009) Interplay between SCARECROW, GA and LIKE HETEROCHROMATIN PROTEIN 1 in ground tissue patterning in the Arabidopsis root. Plant J 58: 1016-1027.
15. Davuluri GR, van Tuinen A, Fraser PD, Manfredonia A, Newman R, Burgess D, Brummel DA, King SR, Palys J, Uhlig J, Bramley PM, Pennings HMJ, Bowler C (2005) Fruit-specific RNAi-mediated suppression of DET1 enhances carotenoid and flavonoid content in tomatoes. Nat Biotechnol 23: 890-895.
16. Dennis ES, Peacock WJ (2007) Epigenetic regulation of flowering. Curr Opin Plant Biol 10: 520-527.
17. Di Sansebastiano G-P, Paris N, Marc-Martin S, Neuhaus J-M (1998) Specific accumulation of GFP in a non-acidic vacuolar compartment via a C-terminal propeptide-mediated sorting pathway. Plant J 15: 449-457.
18. Fei Z, Tang X, Alba RM, White JA, Ronning CM, Martin GB, Tanksley SD, Giovannoni JJ (2004) Comprehensive EST analysis of tomato and comparative genomics of fruit ripening. Plant J 40: 47-59.
19. Gaffe J, Bru J-P, Causse M, Vidal A, Stamitti-Bert L, Carde J-P, Gallusci P (2000) LEFPS1, a tomato farnesyl pyrophosphate gene highly expressed during early fruit development. Plant Physiol 123: 1351-1362.
20. Giovannoni J (2001) Molecular biology of fruit maturation and ripening. Annu Rev Plant Physiol Plant Mol Biol 52: 725-749.
21. Girin T, Sorefan K, Ostergaard L (2009) Meristematic sculpting in fruit development. J Exp Bot 60: 1493-1502.
22. Gonzalez N, Gévaudant F, Hernould M, Chevalier C, Mouras A (2007) The cell cycle-associated protein kinase WEE1 regulates cell size in relation to endoreduplication in developing tomato fruit. Plant J 51: 642-655.
23. Goodrich J, Puangsomlee P, Martin M, Long D, Meyerowitz EM, Coupland G (1997) A Polycomb-group gene regulates homeotic gene expression in Arabidopsis. Nature 386: 44-51.
24. Grant-Downton RT, Dickinson HG (2006) Epigenetics and its implications for plant biology 2. The 'epigenetic epiphany': epigenetics, evolution and beyond. Ann Bot 97: 11-27.
25. Guitton A, Berger F (2005) Control of reproduction by Polycomb Group complexes in animals and plants. Int J Dev Biol 49: 707-716.
26. Guyomarc'h S, Bertrand C, Delarue M, Zhou DX (2005) Regulation of meristem activity by chromatin remodelling. Trends Plant Sci 10: 332-338.
27. Haun WJ, Laoueillé-Duprat S, O'Connell MJ, Spillane C, Grossniklaus U, Phillips AR, Kaeppler SM, Springer NM (2007) Genomic imprinting, methylation and molecular evolution of maize Enhancer of zeste (Mez) homologs. Plant J 49: 325-337.
28. Hsieh TF, Fischer RL (2005) Biology of chromatin dynamics. Annu Rev Plant Biol 56: 327-351.
29. Katz A, Oliva M, Mosquna A, Hakim O, Ohad N (2004) FIE and CURLY LEAF polycomb proteins interact in the regulation of homeobox gene expression during sporophyte development. Plant J 37: 707-719.
30. Ketel CS, Andersen EF, Vargas ML, Suh J, Strome S, Simon JA (2005) Subunit contributions to Histone Methyltransferase activities of fly and worm Polycomb Group Complexes. Mol Cell Biol 25: 6857-6868.
31. Köhler C, Grossniklaus U (2002) Epigenetic inheritance of expression states in plant development: the role of Polycomb group proteins. Curr Opin Cell Biol 14: 773-779.
32. Köhler C, Villar CBR (2008) Programming of gene expression by Polycomb group proteins. Trends Cell Biol 18: 236-243.
33. Köhler C, Hennig L, Bouveret R, Gheyselinck J, Grossniklaus U, Gruissem W (2003) Arabidopsis MSI1 is a component of the MEA/FIE Polycomb group complex and required for seed development. EMBO J 22: 4804-4814.
34. Manning K, Tör M, Poole M, Hong Y, Thompson AJ, King GJ, Giovannoni JJ, Seymour GB (2006) A naturally occuring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nat Genet 38: 948-952.
35. Matsukura C, Aoki K, Fukuda N, Mizoguchi T, Asamizu E, Saito T, Shibata D, Ezura H (2008) Comprehensive ressources for tomato functional genomics based on the miniature model tomato Micro-Tom. Curr Genom 9: 436-443.
36. Mayama T, Ohtsubo E, Tsuchimoto S (2003) Isolation and expression analysis of petunia CURLY LEAF-like genes. Plant Cell Physiol 44: 811-819.
37. Müller J, Hart CM, Francis NJ, Vargas ML, Sengupta A, Wild B, Miller EL, O'Connor MB, Kingston RE, Simon JA (2002) Histone methyltransferase activity of a Drosophila Polycomb Group repressor complex. Cell 111: 197-208.
38. Mustilli AC, Fenzi F, Ciliento R, Alfano F, Bowler C (1999) Phenotype of the tomato high pigment-2 mutant is caused by a mutation in the tomato homolog of DEETIOLATED1. Plant Cell 11: 145-158.
39. Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucl Acids Res 29: e45.
40. Schubert D, Clarenz O, Goodrich J (2005) Epigenetic control of plant development by Polycomb-group proteins. Curr Opin Plant Biol 8: 553-561.
41. Schubert D, Primavesi L, Bishopp A, Roberts G, Doonan J, Jenuwein T, Goodrich J (2006) Silencing by plant Polycomb-group genes requires dispersed trimethylation of histone H3 at lysine 27. EMBO J 25: 4638-4649.
42. Seymour G, Poole M, Manning K, King GJ (2008) Genetics and epigenetics of fruit development and ripening. Curr Opin Plant Biol 11: 58-63.
43. Shaw P, Dolan L (2008) Chromatin and Arabidopsis root development. Sem Cell Dev Biol 19: 580-585.
44. Spillane C, Schmid KJ, Laoueille-Duprat S, Pien S, Escobar-Restrepo J-M, Baroux C, Gagliardini V, Page DR, Wolfe KH, Grossniklaus U (2007) Positive Darwinian selection at the imprinted MEDEA locus in plants. Nature 448: 349-352.
45. Springer NM, Napoli CA, Selinger DA, Pandey R, Cone KC, Chandler VL, Kaeppler HF, Kaeppler SM (2003) Comparative analysis of SET domain proteins in maize and Arabidopsis reveals multiple duplications preceding the divergence of monocots and dicots. Plant Physiol 132: 907-925.
46. Télef N, Stammitti-Bert L, Mortain-Bertrand A, Maucourt M, Carde J, Rolin D, Gallusci P (2006) Sucrose deficiency delays lycopene accumulation in tomato fruit pericarp discs. Plant Mol Biol 62: 453-469.
47. Teyssier E, Bernacchia G, Maury S, How Kit A, Stammitti-Bert L, Rolin D, Gallusci P (2008) Tissue dependent variations of DNA methylation and endoreduplication levels during tomato fruit development and ripening. Planta 228: 391-399.
48. Tie F, Furuyama T, Prasad-Sinha J, Jane E, Harte PJ (2001) The Drosophila Polycomb Group proteins ESC and E(Z) are present in a complex containing the histone-binding protein p55 and the histone deacetylase RPD3. Development 128: 275-286.
49. van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S (2002) Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence Tag collection and selective genomic sequencing. Plant Cell 14: 1441-1456.
50. Vermaak D, Ahmad K, Henikoff S (2003) Maintenance of chromatin states: an open-and-shut case. Curr Opin Cell Biol 15: 266-274.
51. von Arnim AG, Deng XW, Stacey MG (1998) Cloning vectors for the expression of green fluorescent protein fusion proteins in transgenic plants. Gene 221: 35-43.
52. Xu L, Shen W-H (2008) Polycomb silencing of KNOX genes confines shoot stem cell niches in Arabidopsis. Curr Biol 18: 1966-1971.