A chemically modified α-amylase with a molten-globule state has entropically driven enhanced thermal stability

Protein Engineering, Design and Selection

Volumn 23, Issue 10, 2010, Pages 769-780

  Siddiqui, Khawar Sohail ^a   Poljak, Anne ^a   De Francisci, Davide ^a   Guerriero, Gea ^a,c   Pilak, Oliver ^a   Burg, Dominic ^a   Raftery, Mark J ^a   Parkin, Don M ^b   Trewhella, Jill ^b   Cavicchioli, Ricardo ^a  

^a UNIVERSITY OF NEW SOUTH WALES   (Australia)

^b UNIVERSITY OF SYDNEY   (Australia)

^c ALBANOVA UNIVERSITY CENTER   (Sweden)

Author keywords

activation thermodynamics; calorimetry; entropy; enzyme kinetics; protein X ray crystallographic structure

Indexed keywords

ACTIVATION THERMODYNAMICS; BIOPHYSICAL PROPERTIES; CARBOXYL GROUPS; CHEMICALLY MODIFIED; HELICAL CONTENT; SECONDARY STRUCTURES; TERTIARY STRUCTURES; THERMAL STABILITY; THERMODYNAMIC ACTIVATION PARAMETERS; TRANSITION STATE; X RAY CRYSTAL STRUCTURES;

CALORIMETRY; CHEMICAL MODIFICATION; ENTROPY; ENZYME KINETICS; ENZYMES; MOLECULAR INTERACTIONS; THERMODYNAMICS; X RAYS;

CRYSTAL STRUCTURE;

AMYLASE; STARCH;

ARTICLE; CHEMICAL MODIFICATION; CHEMICAL STRUCTURE; CIRCULAR DICHROISM; DIFFERENTIAL SCANNING CALORIMETRY; ENTROPY; ENZYME ANALYSIS; ENZYME ASSAY; ENZYME KINETICS; ENZYME STRUCTURE; FLUORESCENCE; HYDROLYSIS; MASS SPECTROMETRY; MICHAELIS MENTEN KINETICS; POLYACRYLAMIDE GEL ELECTROPHORESIS; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; PROTEIN STABILITY; PROTEIN TERTIARY STRUCTURE; SMALL ANGLE SCATTERING; TEMPERATURE SENSITIVITY; THERMODYNAMICS; THERMOSTABILITY; ULTRAVIOLET SPECTROSCOPY; X RAY CRYSTALLOGRAPHY; X RAY DIFFRACTION;

ALPHA-AMYLASES; CIRCULAR DICHROISM; CRYSTALLOGRAPHY, X-RAY; ENTROPY; KINETICS; PROTEIN DENATURATION; PROTEIN FOLDING; PROTEIN STABILITY; PROTEIN STRUCTURE, SECONDARY; PROTEIN STRUCTURE, TERTIARY; SPECTROPHOTOMETRY, ULTRAVIOLET; TEMPERATURE;

EID: 77956593720     PISSN: 17410126     EISSN: 17410134     Source Type: Journal    
DOI: 10.1093/protein/gzq051     Document Type: Article

References (68)

1. Adams, P.D., Grosse-Kunstleve, R.W. and Hung, L.W., et al. (2002) Acta Crystallogr. D Biol. Crystallogr., 58, 1948-1954.
2. Bommarius, A.S., Broering, J.M., Chaparro-Riggers, J.F. and Polizzi, K.M. (2006) Curr. Opin. Biotechnol., 17, 606-610.
3. Brzozowski, A.M. and Davies, G.J. (1997) Biochemistry, 36, 10837-10845.
4. Cavicchioli, R.C., Curmi, P.M.G., Siddiqui, K.S. and Thomas, T. (2006) In Rainey, F.A. and Oren, A. (eds), Methods in Microbiology. Academic Press, Elsevier Ltd, UK, pp. 395-436.
5. Chang, C.T., Tang, M.S. and Lin, C.F. (1995) Biochem. Mol. Biol. Int., 36, 185-193.
6. Chen, X. and Matthews, C.R. (1994) Biochemistry, 33, 6356-6362.
7. Collaborative Computational Project. (1994) Acta Crystallogr. D Biol. Crystallogr., 50, 760-763.
8. Cox, J.M., Davis, C.A., Chan, C., Jourden, M.J., Jorjorian, A.D., Brym, M.J., Snider, M.J., Borders, C.L., Jr and Edmiston, P.L. (2003) Biochemistry, 42, 1863-1871.
9. DAmico, S., Marx, J.C., Gerday, C. and Feller, G. (2003) J. Biol. Chem., 278, 7891-7896.
10. Daniel, R.M., Danson, M.J., Hough, D.W., Lee, C.K., Peterson, M.E. and Cowan, D.A. (2008) In Siddiqui, K.S. and Thomas, T. (eds), Protein Adaptation in Extremophiles. Nova Science Publishers, New York, USA, pp. 1-34.
11. Dolginova, E.A., Roth, E., Silman, I. and Weiner, L.M. (1992) Biochemistry, 31, 12248-12254.
12. Duy, C. and Fitter, J. (2005) J. Biol. Chem., 280, 37360-37365.
13. Eijsink, V.G., Bjrk, A., Gåseidnes, S., Sirevåg, R., Synstad, B., van den Burg, B. and Vriend, G. (2004) J. Biotechnol., 113, 105-120.
14. Emsley, P. and Cowtan, K. (2004) Acta Crystallogr. D Biol. Crystallogr., 60, 2126-2132.
15. Fitter, J. (2005) Cell. Mol. Life Sci., 62, 1925-1937.
16. Fitter, J. and Haber-Pohlmeier, S. (2004) Biochemistry, 43, 9589-9599.
17. Fritz, G., Bergmann, A. and Glatter, O. (2000) J. Chem. Phys., 113, 9733-9740.
18. Fukada, H., Takahashi, K. and Sturtevant, J.M. (1987) Biochemistry, 26, 4063-4068.
19. Gallivan, J.P. and Dougherty, D.A. (1999) Proc. Natl Acad. Sci. USA, 96, 9459-9464.
20. Georlette, D., Damien, B., Blaise, V., Depiereux, E., Uversky, V.N., Gerday, C. and Feller, G. (2003) J. Biol. Chem., 278, 37015-37023.
21. Glatter, O. and Kratky, O. (1982) Small Angle X-Ray Scattering. Academic Press, London.
22. Guinier, A. and Fournet, G. (1995) Small Angle Scattering of X-Rays. John Wiley and Sons, New York.
23. Hurle, M.R., Michelotti, G.A., Crisanti, M.M. and Matthews, C.R. (1987) Proteins, 2, 54-63.
24. Janecek, S. and Baláz, S. (1992) FEBS Lett., 304, 1-3.
25. Jeffries, C.M., Whitten, A.E., Harris, S.P. and Trewhella, J. (2008) J. Mol. Biol., 377, 1186-1199.
26. Konermann, L. (2004) Encyclopedia of Life Sciences. John Wiley and Sons, New York, pp. 1-6.
27. Koshiba, T., Yao, M., Kobashigawa, Y., Demura, M., Nakagawa, A., Tanaka, I., Kuwajima, K. and Nitta, K. (2000) Biochemistry, 39, 3248-3257.
28. Kreimer, D.I., Shnyrov, V.L., Villar, E., Silman, I. and Weiner, L. (1995) Protein Sci., 4, 2349-2357.
29. Lonhienne, T., Gerday, C. and Feller, G. (2000) Biochim. Biophys. Acta, 1543, 1-10.
30. Matsumura, M., Signor, G. and Matthews, B.W. (1989) Nature, 342, 291-293.
31. McCoy, A.J., Grosse-Kunstleve, R.W., Adams, P.D., Winn, M.D., Storoni, L.C. and Read, R.J. (2007) J. Appl. Crystallogr., 40, 658-674.
32. Mitidieri, S., Martinelli, A.H.S., Schrank, A. and Vainstein, M.H. (2006) Bioresour. Technol., 97, 1217-1224.
33. Mizuguchi, M., Matsuura, A. and Nabeshima, Y., et al. (2005) Proteins, 61, 356-365.
34. Mrabet, N.T., Van den Broeck, A. and Van den brande, I., et al. (1992) Biochemistry, 31, 2239-2253.
35. Muller, N. (1992) TIBS, 17, 459-463.
36. Oliveberg, M., Tan, Y-J. and Fersht, A.R. (1995) Proc. Natl Acad. Sci. USA, 92, 8926-8929.
37. Petsko, G.A. (2001) Methods Enzymol., 334, 469-478.
38. Poklar, N., Lah, J., Salobar, M., Macek, P. and Vesnaver, G. (1997) Biochemistry, 36, 14345-14352.
39. Prabhu, N.V. and Sharp, K.A. (2005) Annu. Rev. Phys. Chem., 56, 521-548.
40. Ptitsyn, O.B. (1995) TIBS, 20, 376-379.
41. Ptitsyn, O.B. (1996) Nat. Struct. Biol., 3, 488-490.
42. Richardson, T.H., Tan, X. and Frey, G., et al. (2002) J. Biol. Chem., 277, 26501-26507.
43. Rivera, M.H., López-Mungúa, A., Soberón, X. and Saab-Rincón, G. (2003) Protein Eng., 16, 505-514.
44. Sanchez-Ruiz, J.M., Lopez-Lacomba, M.C., Cortijo, M. and Mateo, P.L. (1988) Biochemistry, 27, 1648-1652.
45. Segal, I.H. (1993) Enzyme Kinetics: Behavior and Analysis of Rapid Equilibrium and Steady-State Enzyme Systems. John Wiley and Sons, New York.
46. Shaw, A. and Bott, R. (1996) Curr. Opin. Struct. Biol., 6, 546-550.
47. Shokri, M.M., Khajeh, K., Alikhajeh, J., Asoodeh, A., Ranjbar, B., Hosseinkhani, S. and Sadeghi, M. (2006) Biophys. Chem., 122, 58-65.
48. Shortle, D. (1996) FASEB J., 10, 27-34.
49. Siddiqui, K.S. and Cavicchioli, R. (2005) Extremophiles, 9, 471-476.
50. Siddiqui, K.S. and Cavicchioli, R. (2006) Annu. Rev. Biochem., 75, 403-433.
51. Siddiqui, K.S., Loviny-Anderton, T., Rangarajan, M. and Hartley, B.S. (1993) Biochem. J., 296, 685-691.
52. Siddiqui, K.S., Cavicchioli, R. and Thomas, T. (2002) Extremophiles, 6, 143-150.
53. Siddiqui, K.S., Poljak, A. and Cavicchioli, R. (2004) Cell. Mol. Biol., 50, 657-667.
54. Siddiqui, K.S., Poljak, A. and Guilhaus, M., et al. (2006) Proteins, 64, 486-501.
55. Siddiqui, K.S., Parkin, D.M., Curmi, P.M.G., De Francisci, D., Poljak, A., Barrow, K., Noble, M.H., Trewhella, J. and Cavicchioli, R. (2009) Biotechnol. Bioeng., 103, 676-686.
56. Stanley, S.M. and Poljak, A. (2003) J. Chromatogr. B, 785, 205-218.
57. Svergun, D. (1992) J. Appl. Cryst., 25, 495-503.
58. Svergun, D.I., Barberato, C. and Koch, M.H.J. (1995) J. Appl. Cryst., 28, 768-773.
59. Uversky, V.N. (2002) Protein Sci., 11, 739-756.
60. Vieille, C. and Zeikus, G.J. (2001) Microbiol. Mol. Biol. Rev., 65, 1-43.
61. Violet, M. and Meunier, C. (1989) Biochem. J., 263, 665-670.
62. Vujicic-Zagar, A. and Dijkstra, B.W. (2006) Acta Crystallogr. Sect. F, 62, 716-721.
63. Walker, J.M. (2002) The Protein Protocols Handbook. Humana Press, NJ, USA.
64. Wang, C., Lascu, I. and Giartosio, A. (1998) Biochemistry, 37, 8457-8464.
65. Watanabe, M., Kobashigawa, Y., Aizawa, T., Demura, M. and Nitta, K. (2004) Protein J., 23, 335-342.
66. Xie, D. and Freire, E. (1994) Proteins, 19, 291-301.
67. Xie, Q., Guo, T., Lu, J. and Zhou, H.M. (2004) Int. J. Biochem. Cell. Biol., 36, 296-306.
68. Zhang, N., Suen, W.C., Windsor, W., Xiao, L., Madison, V. and Zaks, A. (2003) Protein Eng., 16, 599-605.