Structure and thermodynamics of the extraordinarily stable molten globule state of canine milk lysozyme

Biochemistry

Volumn 39, Issue 12, 2000, Pages 3248-3257

  Koshiba, Takumi ^a   Yao, Min ^a   Kobashigawa, Yoshihiro ^a   Demura, Makoto ^a   Nakagawa, Atsushi ^a   Tanaka, Isao ^a   Kuwajima, Kunihiro ^b   Nitta, Katsutoshi ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

8 ANILINO 1 NAPHTHALENESULFONIC ACID; ALPHA LACTALBUMIN; LYSOZYME;

ANIMAL CELL; ARTICLE; CIRCULAR DICHROISM; DOG; ENZYME STRUCTURE; MELTING POINT; MILK; NONHUMAN; PRIORITY JOURNAL; PROTEIN STABILITY; STRUCTURE ANALYSIS; THERMODYNAMICS;

AMINO ACID SEQUENCE; ANILINO NAPHTHALENESULFONATES; ANIMALS; APOENZYMES; CALORIMETRY, DIFFERENTIAL SCANNING; CIRCULAR DICHROISM; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; DOGS; ENZYME STABILITY; MILK; MOLECULAR SEQUENCE DATA; MURAMIDASE; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PROTEIN BINDING; PROTEIN CONFORMATION; PROTONS; THERMODYNAMICS;

ANIMALIA; CANIS FAMILIARIS; EQUIDAE;

EID: 0034724253     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi991525a     Document Type: Article

References (80)

1. Aune, K. C., Salahuddin, A., Zarlengo, M. H., and Tanford, C. (1967) J. Biol. Chem. 242, 4486-4489.
2. Tanford, C., Aune, K. C., and Ikai, I. (1973) J. Mol. Biol. 73, 185-197.
3. Ikai, A., Fish, W. W., and Tanford, C. (1973) J. Mol. Biol. 73, 165-184.
4. Kuwajima, K. (1989) Proteins: Struct. Funct. Genet. 6, 87-103.
5. Ptitsyn, O. B. (1992) Protein Folding (Creighton, T. E., Ed.) pp 243-300, Freeman, New York.
6. Ptitsyn, O. B. (1995) Adv. Protein Chem. 47, 83-229.
7. Kuwajima, K., Nitta, K., Yonayama, M., and Sugai, S. (1976) J. Mol. Biol. 106, 359-373.
8. Griko, Y. V., Privalov, P. L., Venyaminov, S. Y., and Kutyshenko, V. P. (1988) J. Mol. Biol. 202, 127-138.
9. Kuwajima, K. (1996) FASEB J. 10, 102-109.
10. Dabora, J. M., Pelton, J. G., and Marqusee, S. (1996) Biochemistry 35, 11951-11958.
11. Tsui, V., Gracia, C., Cavagnero, S., Siuzdak, G., Dyson, H. J., and Wright, P.E (1999) Protein Sci. 8, 45-49.
12. Peng, Z-yu, and Kim, P. S. (1994) Biochemistry 33, 2136-2141.
13. Peng, Z-yu, Wu, L. C., and Kim, P. S. (1995) Biochemistry 34, 3248-3252.
14. Wu, L. C., Peng, Z-yu and Kim, P. S. (1995) Nat. Struct. Biol. 2, 281-286.
15. Schulman, B. A., and Kim, P. S. (1996) Nat. Struct. Biol. 3, 682-687.
16. Wu, L. C., and Kim, P. S. (1997) Proc. Natl. Acad. Sci. U.S.A. 94, 14314-14319.
17. Song, J., Bai, P., Luo, L., and Peng, Z-yu (1998) J. Mol. Biol. 280, 167-174.
18. Wu, L. C., and Kim, P. S. (1998) J. Mol. Biol. 280, 175-182.
19. Mizuguchi, M., Masaki, K., and Nitta, K. (1999) J. Mol. Biol. 280, 175-182.
20. Kay, M. S., and Baldwin, R. L. (1996) Nat. Struct. Biol. 3, 439-445.
21. Eliezer, D., Yao, J., Dyson, H. J., and Wright, P. E. (1998) Nat. Struct. Biol. 5, 148-155.
22. Fink, A. L., Oberg, K. A., and Seshadri, S. (1998) Folding Des. 3, 19-25.
23. Kay, M. S., and Ramos, C. H., and Baldwin, R. L. (1999) Proc. Natl. Acad. Sci. 96, 2007-2012.
24. Morozova, L. A., Haezebrouck, P., and Van Cauwelaert, F. (1991) Biophys. Chem. 41, 185-191.
25. Van Dael, H., Haezebrouck, P., Morozova, L. A., Arico-Muendel, C., and Dobson, C. M. (1993) Biochemistry 32, 11886-11894.
26. Griko, Y. V., Freire, E., Privalov, G., Van Dael, H., and Privalov, P. L. (1995) J. Mol. Biol. 252, 447-459.
27. Morozova, L. A., Haynie, D. T., Arico-Muendel, C., Van Dael, H., and Dobson, C. M. (1995) Nat. Struct. Biol. 2, 871-875.
28. Morozova, L. A., Arico-Muendel, C., Haynie, D. T., Emelyanenko, V. I., Van Dael, H., and Dobson, C. M. (1997) J. Mol. Biol. 268, 903-921.
29. Grobler, J. A., Rao, K. R., Pervaiz, S., and Brew, K. (1994) Arch. Biochem, Biophys. 313, 360-366.
30. Kikuchi, M., Kawano, K., and Nitta, K. (1998) Protein Sci. 7, 2150-2155.
31. Koshiba, T., Hayashi, T., Ishido, M., Kumagai, I., Ikura, T., Kawano, K., Nitta, K., and Kuwajima, K. (1999) Protein Eng. 12, 429-435.
32. Nitta, K., Tsuge, H., Sugai, S., and Shimazaki, K. (1987) FEBS Lett. 223, 405-408.
33. Koshiba, T., Tsumoto, K., Masaki, K., Kawano, K., Nitta, K., and Kumagai, I. (1998) Protein Eng. 11, 683-690.
34. Morris, G. A., and Freeman, R. (1978) J. Magn. Reson. 29, 433-462.
35. Sakabe, N., Ikemizu, S., Sakabe, K., Higashi, T., Nakagawa, A., Watanabe, N., Adachi, S., and Sasaki, K. (1995) Rev. Sci. Instrum. 66, 1276-1281.
36. Otwinowski, Z. (1993) pp 80-86, SERC Daresbury Laboratory, Warrington, UK.
37. Collaborative Computational Project, Number 4. (1994) Acta Crystallogr. D50, 760-763.
38. Navaza, J. (1994) Acta Crystallogr. A50, 157-163.
39. Tsuge, H., Ago, H., Noma, M., Nitta, K., Sugai, S., and Miyano, M. (1992). J. Biochem. 111, 141-143.
40. Brünger, A. T. (1993) X-PLOR, Ver. 3.1. A system for X-ray Crystallography and NMR, Yale University Press, New Haven, CT.
41. Desmet, J., Van Dael, H., Van Cauwelaert, F., Nitta, K., and Sugai, S. (1989) J. Inorg. Biochem. 37, 185-191.
42. Yutani, K., Ogasahara, K., and Kuwajima, K. (1992) J. Mol. Biol. 228, 347-350.
43. Griko, Y., Freire, E., and Privalov, P. L. (1994) Biochemistry 33, 1889-1899.
44. Pfeil, W. (1998) Proteins: Struct. Funct. Genet. 30, 43-48.
45. Griko, Y., and Remeta, D. P. (1999) Protein Sci. 8, 554-561.
46. Koshiba, T., Kuwajima, K., Kobashigawa, Y., and Nitta, K. (2000) to be published.
47. Stryer, L. (1965) J. Mol. Biol. 13, 482-495.
48. Semisotnov, G. V., Rodionova, N. A., Razgulyaev, O. I., Uversky, V. N., Gripas, A. F., and Gilmanshin, R. I. (1991) Biopolymers 31, 119-128.
49. Demarest, S. J., Fairman, R., and Raleigh, D. P. (1998) J. Mol. Biol. 283, 279-291.
50. Semisotnov, G. V., Rodionova, N. A., Kutyshenko, V. P., Ebert, B., Blanck, J., and Ptitsyn, O. B. (1987) FEBS Lett. 224, 9-13.
51. Kuwajima, K., Harushima, Y., and Sugai, S. (1986) Int. J. Peptide Protein Res. 27, 18-27.
52. Baum, J., Dobson, C. M., Evans, P. A., and Hanley, C. (1989) Biochemistry 28, 7-13.
53. Nitta, K., Tsuge, H., and Iwamoto, H. (1993) Int. J. Peptide Protein Res. 41, 118-123.
54. Artymiuk, P. J., and Blake, C. C. F. (1981) J. Mol. Biol. 152, 737-762.
55. Stuart, D. I., Acharya, K. R., Walker, N. P. C., Smith, S. G., Lewis, M., and Phillips, D. C. (1986) Nature 324, 84-87.
56. Acharya, K. R., Stuart, D. I., Walker, N. P. C., Lewis, M., and Phillips, D. C. (1989) J. Mol. Biol. 208, 99-127.
57. Acharya, K. R., Ren, J., Stuart, D. I., Phillips, D. C., and Fenna, R. E. (1991) J. Mol. Biol. 221, 571-581.
58. Pike, A. C. W., Brew, K., and Acharya, K. R. (1996) Structure 4, 691-703.
59. Guss, J. M., Messer, M., Costello, M., Hardy, K., and Kumar, V. (1997) Acta Crystallogr. D53, 355-363.
60. Mizuguchi, M., Arai, M., Yue, K., Nitta, K., and Kuwajima, K. (1998) J. Mol. Biol. 283, 262-277.
61. Uchiyama, H., Perez-Prat, E. M., Watanabe, K., Kumagai, I., and Kuwajima, K. (1995) Protein Eng. 8, 1153-1161.
62. Alexandrescu, A. T., Evans, P. A., Pitkeathly, M., Baum, J., and Dobson, C. M. (1993) Biochemistry 32, 1707-1718.
63. Dobson, C. M. (1995) Nat. Struct. Biol. 2, 513-517.
64. Blagdon, D. E., and Goodman, M. (1975) Biopolymers 14, 241-245.
65. Wada, A. (1976) Adv. Biophys. 9, 1-63.
66. Hol, W. G. J., van Duijnen, P. T., and Berendeson, H. J. C. (1978) Nature 273, 441-446.
67. Nicholson, N., Becktel, W. J., and Matthews, B. W. (1988) Nature 336, 651-656.
68. Tanford, C. (1962) Adv. Protein. Chem. 17, 69-165.
69. Hughson, F. M., Barrick, D., and Baldwin, R. L. (1991) Biochemistry 30, 4113-4118.
70. Kiefhaber, T., and Baldwin, R. L. (1995) J. Mol. Biol. 252, 122-132.
71. Marmorino, J. L., and Pielak, G. J. (1995) Biochemistry 34, 3140-3143.
72. Marmorino, J. L., Lehti, M., and Pielak, G. J. (1998) J. Mol. Biol. 275, 379-388.
73. Merutka, G., Lipton, W., Shalongo, W., Park, S. H., and Stellwagen, E. (1990) Biochemistry 29, 7511-7515.
74. Kraulis, P. J. (1991) J. Appl. Cryst. 24, 946-950.
75. McKenzie, H. A., and Shaw, D. C. (1985) Biochem. Int. 10, 23-31.
76. Brew, K., Vanaman, T. C., and Hill, R. L. (1967) J. Biol. Chem. 242, 3747-3749.
77. Brew, K. (1972) Eur. J. Biochem. 27, 341-353.
78. Shewale, J. G., Sinha, S. K., and Brew, K. (1984) J. Biol. Chem. 259, 4947-4956.
79. Hall, L., Craig, R., Edbrooke, M. R., and Campbell, P. N. (1982) Nucl. Acids Res. 10, 3503-3515.
80. Ikeguchi, M., Kuwajima, K., Mitani, M., and Sugai, S. (1986) Biochemistry 25, 6965-6972.