DNA functionalized carbon nanotubes for nonbiological applications

Materials and Manufacturing Processes

Volumn 25, Issue 9, 2010, Pages 891-908

  Paul, Ambarish ^a   Bhattacharya, Baidurya ^a  

^a INDIAN INSTITUTE OF TECHNOLOGY   (India)

Author keywords

Carbon nanotube; Characterization; Deoxyribonucleic acid; Functionalized; Non covalent; Sensors

Indexed keywords

BIOLOGICAL MACROMOLECULE; CHARACTERIZATION TECHNIQUES; COMPUTATIONAL DEVELOPMENT; CONFORMATIONAL CHANGE; DEOXYRIBONUCLEIC ACIDS; DNA BASIS; DNA INTERACTION; FUNCTIONALIZATIONS; FUNCTIONALIZED; FUNCTIONALIZED CARBON NANOTUBES; FUTURE DIRECTIONS; METALLIC NANOTUBES; NANOMATERIAL; NON-COVALENT; POTENTIAL APPLICATIONS; PROSPECTIVE APPLICATIONS; SCANNING TUNNELING MICROSCOPY (STM); SEM; STACKING INTERACTION; UV-VISIBLE;

ATOMIC FORCE MICROSCOPY; ATOMIC SPECTROSCOPY; BIOLOGICAL MATERIALS; CARBON NANOTUBES; ELECTROCHEMICAL PROPERTIES; GENES; HYBRID MATERIALS; MATERIALS PROPERTIES; ORGANIC ACIDS; RAMAN SPECTROSCOPY; SCANNING ELECTRON MICROSCOPY; SCANNING TUNNELING MICROSCOPY; SENSORS; STEREOCHEMISTRY; VAN DER WAALS FORCES;

DNA;

EID: 77956550543     PISSN: 10426914     EISSN: 15322475     Source Type: Journal    
DOI: 10.1080/10426911003720755     Document Type: Article

References (93)

1. Iijima, S. Helical microtubles of graphitic carbon. Lett. Nature 1991, 354 56-58.
2. Tans, S.J.; et al. Individual single-wall carbon nanotubes as quantum wires. Lett. Nature 1997, 386, 474-477.
3. Porath, D.; et al. Direct measurement of electrical transport through DNA molecules. Lett. Nature 2000, 403, 635-638.
4. Wei, D.; et al. Real-time and in situ control of the gap size of nanoelectrodes for molecular devices. Nano Lett. 2008, 8, 1625-1630.
5. Roy, S.; et al. Direct electrical measurements on single-molecule genomic DNA using single-walled carbon nanotubes. Nano Lett. 2008, 8, 26-30.
6. Mclean, R.S.; et al. Controlled two-dimensional pattern of spontaneously aligned carbon nanotubes. Nano Lett. 2006, 6 (1), 55-60.
7. Khripin, C.Y.; Zheng, M.; Jagota, A. Deposition and meniscus alignment of DNA-CNT on a substrate. Journal of Colloid and Interface Science 2009, 330, 255-265.
8. Li, S.; et al. DNA-directed self-assembling of carbon nanotubes. Journal of the American Chemical Soceity 2005, 127 (1), 14-15.
9. Lu, Y.; et al. DNA functionalization of carbon nanotubes for ultrathin atomic layer deposition of high K dielectrics for nanotube transistors with 60 mV/decade switching. J. Am. Chem. Soc. 2006, 128 (11), 3518-3519.
10. Chou, S.G.; et al. Optical characterization of DNA-wrapped carbon nanotube hybrids. Chemical Physics Lett. 2004, 397, 296-301.
11. Guo, Z.J.; Sadler, P.J.; Tsang, S.C. Immobilization and visualization of DNA and proteins on carbon nanotubes. Adv. Mater. 1998, 10 (9), 701-703.
12. Ito, Y.; Fukusaki, E. DNA as a 'Nanomaterial'. Journal of Molecular Catalysis B: Enzymatic 2004, 28 (4-6), 155-166.
13. Hu, C.; et al. DNA functionalized single-walled carbon nanotubes for electrochemical detection. The Journal of Physical Chemistry B 2005, 109 (43), 20072-20076.
14. Zheng, M.; et al. DNA-assisted dispersion and separation of carbon nanotubes. Nature Materials 2003, 2 (May), 338-342.
15. Johnson, R.R.; et al. Free energy landscape of a DNA-carbon nanotube hybrid using replica exchange molecular dynamics. Nano Lett. 2009, 9 (2), 537-541.
16. Meunier, V.; Lambin, P. Scanning tunneling microscopy and spectroscopy of topological defects in carbon nanotubes. Carbon 2000, 38 (11), 1729-1733.
17. Zhang, J.; et al. Effect of chemical oxidation on the structure of single-walled carbon nanotubes. J. Phys. Chem. B 2003, 107 (16), 3712-3718.
18. Park, S.; Srivastava, D.; Cho, K. Generalized chemical reactivity of curved surfaces: carbon nanotubes. Nano Lett. 2003, 3 (9), 1273-1277.
19. Rosca, I.D.; et al. Oxidation of multiwalled carbon nanotubes by nitric acid. Carbon 2005, 43 (15), 3124-3131.
20. Dwyer, C.; et al. DNA-functionalized single-walled carbon nanotubes. Nanotechnology 2002, 13 (5), 601-604.
21. Baker, S.E.; et al. Covalently bonded adducts of deoxyribonucleic acid (DNA) oligonucleotides with single-wall carbon nanotubes: synthesis and hybridization. Nano Lett. 2002, 2 (12), 413-1417.
22. Wang, Y.; Iqbal, Z.; Mitra, S. Microwave-induced rapid chemical functionalization of single-walled carbon nanotubes. Carbon 2005, 43 (5), 1015-1020.
23. Xia, W.; et al. A highly efficient gas-phase route for the oxygen functionalization of carbon nanotubes based on nitric acid vapor. Carbon 2009, 47 (3), 919-922.
24. Huang, S.; Dai, L. Plasma etching for purification and controlled opening of aligned carbon nanotubes. J. Phys. Chem. B 2002, 106 (14), 3543-3545.
25. Yan, Y.H.; et al. Systematic studies of covalent functionalization of carbon nanotubes via argon plasma-assisted UV grafting. Nanotechnology 2007, 18 (11), 115712.
26. Wildoer, J.W.G.; et al. Electronic structure of atomically resolved carbon nanotubes. Nature 1998, 391 (6662), 59-62.
27. Jeng, E.S.; et al. Detection of DNA hybridization using the near-infrared band-gap fluorescence of single-walled carbon nanotubes. Nano Lett. 2006, 6 (3), 371-375.
28. Tsang, S.C.; et al. Immobilization of platinated and iodinated oligonucleotides on carbon nanotubes. Angewandte Chemie International 1997, 36 (20), 2198-2200.
29. Meng, S.; et al. DNA nucleoside interaction and identification with carbon nanotubes. Nano Lett. 2007, 7 (1), 45-50.
30. Enyashin, A.N.; Gemming, S.; Seifert, G. DNA-wrapped carbon nanotubes. Nanotechnology 2007, 18 (24), 245702-245712.
31. Ortmann, F.; Schmidt, W.G.; Bechstedt, F. Attracted by longrange electron correlation: Adenine on graphite. Phy. Rev. Lett. 2005, 95 (18), 186101-186104.
32. Meng, S.; et al. Determination of DNA-base orientation on carbon nanotubes through directional optical absorbance. Nano Lett. 2007, 7 (8), 2312-2316.
33. Hughes, M.E.; Brandin, E.; Golovchenko, J.A. Optical absorption of DNA-carbon nanotube structures. Nano Lett. 2007, 7 (5), 1191-1194.
34. Johnson, R.R.; Johnson, A.T.C.; Klein, M.L. Probing the structure of DNA-carbon nanotube hybrids with molecular dynamics. Nano Lett. 2008, 8 (1), 69-75.
35. Shtogun, Y.V.; Woods, L.M.; Dovbeshko, G.I. Adsorption of adenine and thymine and their radicals on single-wall carbon nanotubes. J. Phys. Chem. C 2007, 111 (49), 18174-18181.
36. Lu, Q.; Bhattacharya, B. The role of atomistic simulations in probing small scale aspects of fracture - a case study on a single walled carbon nanotube. Engineering Fracture Mechanics 2005, 72 (13), 2037-2071.
37. Sreevathsan, R.; et al. Multi-objective materials design by genetic algorithm - Generalized for B1 and B2 ionic structures. Journal of Computational and Theoretical Nanoscience 2009, 6 (4), 849-856.
38. Sreevathsan, R.; Bhattacharya, B.; Chakraborti, N. Designing of ionic materials through multi-objective genetic algorithms. Materials and Manufacturing Processes 2009, 24 (2), 162-168.
39. Gao, H.; Kong, Y.; Cui, D. Spontaneous insertion of DNA oligonucleotides into carbon nanotubes. 2003, 3 (4), 471-473.
40. Lim, M.C.G.; Pei, Q.X.; Zhong, Z.W. Translocation of DNA oligonucleotide through carbon nanotube channels under induced pressure difference. Physica A 2008, 387 (13), 3111-3120.
41. Lau, E.Y.; Lightstone, F.C.; Colvin, M.E. Dynamics of DNA encapsulated in a hydrophobic nanotube. Chem. Phys. Lett. 2005, 412 (1-3), 82-87.
42. Okada, T.; et al. Electrically triggered insertion of single-stranded DNA into single-walled carbon nanotubes. Chemical Physics Letters 2006, 417 (4-6), 288-292. (Pubitemid 43006090)
43. Rajendra, J.; Rodger, A. The binding of single-stranded DNA and PNA to single-walled carbon nanotubes probed by flow linear dichroism. Chem. Eur. J. 2005, 11 (16), 4841-4847.
44. Manohar, S.; Tang, T.; Jagota, A. Structure of Homopolymer DNA-CNT Hybrids. J. Phys. Chem. C 2007, 111 (48), 17835-17845.
45. Lu, G.; Maragakis, P.; Kaxiras, E. Carbon nanotube interaction with DNA. Nano Lett. 2005, 5 (5), 897-900.
46. Martin, W.; Zhu, W.; Krilov, G. Simulation study of noncovalent hybridization of carbon nanotubes by single-stranded DNA in water. J. Phys. Chem. B 2008, 112 (50), 16076-16089.
47. Lindahl, E.; Hess, B.; Spoel, D.V. GROMACS 3.0: A package for molecular simulation and trajectory analysis. Journal of Molecular Modeling 2001, 7 (8), 306-317.
48. Bestel, I.; et al. Two-dimensional self-assembly and complementary base-pairing between amphiphile nucleotides on graphite. Journal of Colloid and Interface Science 2008, 323 (2), 435-440.
49. Mamdouh, W.; et al. Supramolecular nanopatterns self-assembled by adenine-thymine quartets at the liquid/solid interface. J. Am. Chem. Soc. 2006, 128 (40), 13305-13311.
50. Zhu, N.; et al. Label-free and sequence-specific DNA detection down to a picomolar level with carbon nanotubes as support for probe DNA. Analytica Chimica Acta 2009, 650 (1), 44-48.
51. Zhou, N.; et al. Highly sensitive electrochemical impedance spectroscopic detection of DNA hybridization based on Aunano- CNT/PAN nano films. Talanta 2009, 77 (3), 1021-1026.
52. Li, Z.; Wu, Z.; Li, K. The high dispersion of DNA-multiwalled carbon nanotubes and their properties. Analytical Biochemistry 2009, 387, 267-270.
53. Guo, M.; et al. Electrochemical characteristics of the immobilization of calf thymus DNA molecules on multi-walled carbon nanotubes. Bioelectrochemistry 2004, 62 (1), 29-35.
54. Berti, F.; et al. Aligned carbon nanotube thin films for DNA electrochemical sensing. Electrochimica Acta 2009, 54 (22), 5035-5041.
55. Qi, H.; et al. Electrochemical detection of DNA hybridization based on polypyrrole/ss-DNA/multi-wall carbon nanotubes paste electrode. Talanta 2007, 72 (3), 1030-1035.
56. Zheng, M.; Rostovtsev, V.V. Photoinduced charge transfer mediated by DNA-wrapped carbon nanotubes. J. Am. Chem. Soc. 2006, 128 (24), 7702-7703.
57. Dai, H.; et al. Electrical transport properties and field-effect transistors of carbon nanotubes. NANO: Brief Reports and Reviews 2006, 1 (1), 1-4.
58. Napier, M.E.; Hull, D.O.; Thorp, H.H. Electrocatalytic oxidation of DNA-wrapped carbon nanotubes. J. Am. Chem. Soc. 2005, 127 (34), 11952-11953.
59. Hembrama, K.P.S.S.; Rao, G.M. Studies on CNTs/DNA composite. Materials Sc. and Engineering: C 2008, 29 (4), 1093-1097.
60. Wang, G.; Xu, J.J.; Chen, H.Y. Interfacing cytochrome c to electrodes with a DNA - carbon nanotube composite film. Electrochemistry Communications 2002, 4 (6), 506-509.
61. Basuray, S.; et al. Shear and AC field enhanced carbon nanotube impedance assay for rapid, sensitive, and mismatchdiscriminating DNA hybridization. ACS Nano 2009, 3 (7), 1823-1830.
62. Zhang, L.; et al. Optical characterizations and electronic devices of nearly pure (10, 5) single-walled carbon nanotubes. J. Am. Chem. Soc. 2009, 131 (7), 2454-2455.
63. Zhang, L.; et al. Assessment of chemically separated carbon nanotubes for nanoelectronics. J. Am. Chem. Soc. 2008, 130 (8), 2686-2691.
64. Kim, S.N.; et al. Enrichment of (6, 5) single wall carbon nanotubes using genomic DNA. Nano Lett. 2008, 8 (12), 4415-4420.
65. Cha, M.; et al. Reversible metal-semiconductor transition of ssDNA-decorated single-walled carbon nanotubes. Nano Lett. 2009, 9 (4), 1345-1349.
66. Malik, S.; et al. Physical chemical characterization of DNASWNT suspensions and associated composites. Composites Science and Technology 2007, 67 (5), 916-921.
67. Simmons, T.J.; et al. Noncovalent functionalization as an alternative to oxidative acid treatment of single wall carbon nanotubes with applications for polymer composites. ACS Nano 2009, 3 (4), 865-870.
68. Badaire, S.; et al. Liquid crystals of DNA stabilised carbon nanotubes. Adv. Mater. 2005, 17, 1673-1676.
69. Hazani, M.; et al. Confocal fluorescence imaging of DNAfunctionalized carbon nanotubes. Nano Lett. 2003, 3 (2), 153-155.
70. Mizutani, T.; et al. Mechanism of induced circular dichroism of amino acid ester-porphyrin supramolecular systems. Implications to the origin of the circular dichroism of hemoprotein. Inorg. Chem. 1994, 33, 3558-3566.
71. Gao, X.; et al. Detection of trace Hg2+ via induced circular dichroism of DNA wrapped around single-walled carbon nanotubes. J. Am. Chem. Soc. 2008, 130, 9190-9191.
72. Dovbeshko, G.I.; et al. DNA interaction with single-walled carbon nanotubes: a SEIRA study. Chem. Phys. Lett. 2003, 372 (3-4), 432-437.
73. Yarotski, D.A.; et al. Scanning tunneling microscopy of DNA-wrapped carbon nanotubes. Nano Lett. 2009, 9 (1), 12-17.
74. Campbell, J.F.; et al. Atomic force microscopy studies of DNA-wrapped carbon nanotube structure and binding to quantum dots. J. Am. Chem. Soc. 2008, 130 (30), 10648-10655.
75. Burns, D.J.; Toumi, K.Y. Shortening carbon nanotube-tipped AFM probes. International Journal of Nanomanufacturing 2007, 1 (6), 799-809.
76. Burns, D.J.; Toumi, K.Y. Measuring, shortening and functionalizing carbon nanotube tipped AFM probes for DNA sequencing. SMA symposium, 2007.
77. Gigliotti, B.; et al. Sequence-independent helical wrapping of single-walled carbon nanotubes by long genomic DNA. Nano Lett. 2006, 6 (2), 159-164.
78. Buzaneva, E.; et al. DNA nanotechnology of carbon nanotube cells: Physico-chemical models of self-organization and properties. Mater. Sci. Eng. C 2002, 19 (1-2), 41-45.
79. Huang, X.; Mclean, R.S.; Zheng, M. High-resolution length sorting and purification of DNA-wrapped carbon nanotubes by size-exclusion chromatography. Analytical Chemistry 2005, 77 (19), 6225-6228.
80. Nepal, D.; et al. Supramolecular conjugates of carbon nanotubes and DNA by a solid-state reaction. Biomacromolecules 2005, 6 (6), 2919-2922.
81. Ajayan, P.M.; Iijima, S.; Ichihashi, T. Electron energy-loss spectroscopy of carbon nanometer-size tubes. Phy. Rev. B 1993, 47 (11), 6859-6862.
82. Strano, M.S.; et al. Understanding the nature of the DNA-assisted separation of single-walled carbon nanotubes using fluorescence and Raman spectroscopy. Nano. Lett. 2004, 4 (4), 543-550.
83. Strano, M.S. Probing chiral selective reactions using a revised Kataura plot for the interpretation of single-walled carbon nanotubespectroscopy. J.Am.Chem.Soc.2003,125(51),16148-16153.
84. Rajendra, J.; et al. Flow linear dichroism to probe binding of aromatic molecules and DNA to single-walled carbon nanotubes. J. Am. Chem. Soc. 2004, 126 (36), 11182-11188.
85. Zheng, M.; et al. Structure-based carbon nanotube sorting by sequence-dependent DNA assembly. Science 2003, 302 (5650), 1545-1548.
86. Dukovic, G.; et al. Racemic single-walled carbon nanotubes exhibit circular dichroism when wrapped with DNA. J. Am. Chem. Soc. 2006, 128 (28), 9004-9005.
87. Martinez, M.T.; et al. Label-free DNA biosensors based on functionalized carbon nanotube field effect transistors. Nano Lett. 2009, 9 (2), 530-536.
88. Dong, X.; et al. Label-free electronic detection of DNA using simple double-walled carbon nanotube resistors. J. Phys. Chem. C 2008, 112 (26), 9891-9895.
89. Ma, Y.; et al. The electronic role of DNA-functionalized carbon nanotubes: efficacy for in situ polymerization of conducting polymer nanocomposites. J. Am. Chem. Soc. 2008, 130 (25), 7921-7928.
90. Talin, A.A.; et al. Assembly and electrical characterization of DNA-wrapped carbon nanotube devices. J. Vac. Sc. Tech. B 2004, 22 (6), 3107-3111.
91. Staii, C.; Alan, J.; Johnson, T. DNA-decorated carbon nanotubes for chemical sensing. Nano Lett. 2005, 5 (9), 1774-1778.
92. Star, A.; et al. Label-free detection of DNA hybridization using carbon nanotube network field-effect transistors. Biophysics 2006, 103 (4), 921-926.
93. Tang, X.; et al. Carbon nanotube DNA sensor and sensing mechanism. Nano Lett. 2006, 6 (8), 1632-1636.