Proteomics application of crops in the context of climatic changes

Food Research International

Volumn 43, Issue 7, 2010, Pages 1803-1813

  Hashiguchi, Akiko ^a   Ahsan, Nagib ^a   Komatsu, Setsuko ^a  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

Author keywords

Abiotic stress; Climate change; Crops; Proteome

Indexed keywords

ABIOTIC STRESS; AIR POLLUTANTS; BIOLOGICAL PROCESS; CLIMATIC CHANGES; CLIMATIC FACTORS; CROP PLANTS; DEFENSE SYSTEM; ENVIRONMENTAL CHANGE; EXTERNAL STIMULUS; FLOODING STRESS; GLOBAL CLIMATE CHANGES; METAL STRESS; MODIFIED PROTEINS; NOVEL COMPONENT; OSMOTIC STRESS; PHOTOSYNTHETIC STRESS; PHYSIOLOGICAL STATE; PLANT RESPONSE; PLANT STRESS; PLANT STRESS TOLERANCE; POST-TRANSLATIONAL MODIFICATIONS; PROTEIN EXPRESSIONS; PROTEIN NETWORK; PROTEOME ANALYSIS; PROTEOMES; PROTEOMIC APPROACHES; PROTEOMICS; SIGNALING PATHWAYS; SUB-CELLULAR;

AIR POLLUTION; CROPS; MOLECULAR BIOLOGY; PLANTS (BOTANY); PROTEINS;

CLIMATE CHANGE;

EID: 77956442496     PISSN: 09639969     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.foodres.2009.07.033     Document Type: Article

References (138)

1. Aghaei K., Ehsanpour A.A., Komatsu S. Proteome analysis of potato under salt stress. Journal of Proteome Research 2008, 7:4858-4868.
2. Aghaei K., Ehsanpour A.A., Shah A.H., Komatsu S. Proteome analysis of soybean hypocotyl and root under salt stress. Amino Acids 2009, 36:91-98.
3. Agrawal G.K., Hajduch M., Graham K., Thelen J.J. In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed. Plant Physiology 2008, 148:504-518.
4. Agrawal G.K., Jwa N.S., Rakwal R. Rice proteomics: ending phase I and the beginning of phase II. Proteomics 2009, 9:935-963.
5. Ahsan N., Lee D.G., Alam I., Kim P.J., Lee J.J., Ahn Y.O., et al. Comparative proteomic study of arsenic-induced differentially expressed proteins in rice roots reveals glutathione plays a central role during As stress. Proteomics 2008, 8:3561-3576.
6. Ahsan N., Lee D.G., Lee S.H., Kang K.Y., Bahk J.D., Choi M.S., et al. A comparative proteomic analysis of tomato leaves in response to waterlogging stress. Physiologia Plantarum 2007, 131:555-570.
7. Ahsan N., Lee D.G., Lee S.H., Kang K.Y., Lee J.J., Kim P.J., et al. Excess copper induced physiological and proteomic changes in germinating rice seeds. Chemosphere 2007, 67:1182-1193.
8. Ahsan N., Lee D.G., Lee S.H., Lee K.W., Bahk J.D., Lee B.H. A proteomic screen and identification of waterlogging-regulated proteins in tomato roots. Plant and Soil 2007, 295:37-51.
9. Ahsan N., Lee S.H., Lee D.G., Lee H., Lee S.W., Bahk J.D., et al. Physiological and protein profiles alternation of germinating rice seedlings exposed to acute cadmium toxicity. Comptes Rendus Biologies 2007, 330:735-746.
10. Ahsan N., Renaut J., Komatsu S. Recent developments in the application of proteomics to the analysis of plant responses to heavy metals. Proteomics 2009, 9:2602-2621.
11. Aina R., Labra M., Fumagalli P., Vannini C., Marsoni M., Cucchi U., et al. Thiolpeptide level and proteomic changes in response to cadmium toxicity in Oryza sativa L. roots. Environ. Exp. Bot. 2007, 59:381-392.
12. 2 concentration on soybean gene expression. An analysis of growing and mature leaves. Plant Physiology 2006, 142:135-147.
13. Aki T., Shigyo M., Nakano R., Yoneyama T., Yanagisawa S. Nano scale proteomics revealed the presence of regulatory proteins including three FT-like proteins in phloem and xylem saps from rice. Plant and Cell Physiology 2008, 49:767-790.
14. 2 enhances temperature response of photosynthesis in wheat. Physiologia Plantarum 2009, 135:109-120.
15. Alvarez S., Marsh E.L., Schroeder S.G., Schachtman D.P. Metabolomic and proteomic changes in the xylem sap of maize under drought. Plant Cell and Environment 2008, 31:325-340.
16. Amiour N., Merlino M., Leroy P., Branlard G. Proteomic analysis of amphiphilic proteins of hexaploid wheat kernels. Proteomics 2002, 2:632-641.
17. Armstrong W. Aeration in higher plants. Advances in Botanical Research 1979, 7:225-232.
18. Balmer Y., Vensel W.H., DuPont F.M., Buchanan B.B., Hurkman W.J. Proteome of amyloplasts isolated from developing wheat endosperm presents evidence of broad metabolic capability. Journal of Experimental Botany 2006, 57:1591-1602.
19. Baxter-Burrell A., Yang Z., Springer P.S., Bailey-Serres J. RopGAP4-dependent Rop GTPase rheostat control of Arabidopsis oxygen deprivation tolerance. Science 2002, 296:2026-2028.
20. Blomqvist L.A., Ryberg M., Sundqvist C. Proteomic analysis of highly purified prolamellar bodies reveals their significance in chloroplast development. Photosynthesis Research 2008, 96:37-50.
21. Bohler S., Bagard M., Oufir M., Planchon S., Hoffmann L., Jolivet Y., et al. A DIGE analysis of developing poplar leaves subjected to ozone reveals major changes in carbon metabolism. Proteomics 2007, 7:1584-1599.
22. 2 levels. Journal of Proteome Research 2007, 6:4624-4633.
23. Boyer J.S. Plant productivity and environment. Science 1982, 218:443-448.
24. Bräutigam A., Hoffmann-Benning S., Weber A.P. Comparative proteomics of chloroplast envelopes from C3 and C4 plants reveals specific adaptations of the plastid envelope to C4 photosynthesis and candidate proteins required for maintaining C4 metabolite fluxes. Plant Physiology 2008, 148:568-579.
25. Brechenmacher L., Lee J., Sachdev S., Song Z., Nguyen T.H., Joshi T., et al. Establishment of a protein reference map for soybean root hair cells. Plant Physiology 2009, 149:670-682.
26. Caruso G., Cavaliere C., Guarino C., Gubbiotti R., Foglia P., Laganà A. Identification of changes in Triticum durum L. leaf proteome in response to salt stress by two-dimensional electrophoresis and MALDI-TOF mass spectrometry. Analytical and Bioanalytical Chemistry 2008, 391:81-90.
27. Chen X., Wang Y., Li J., Jiang A., Cheng Y., Zhang W. Mitochondrial proteome during salt stress-induced programmed cell death in rice. Plant Physiology and Biochemistry 2009, 47:407-415.
28. Chitteti B.R., Peng Z. Proteome and phosphoproteome differential expression under salinity stress in rice (Oryza sativa) roots. Journal of Proteome Research 2007, 6:1718-1727.
29. Cho W.K., Chen X.Y., Chu H., Rim Y., Kim S., Kim S.T., et al. Proteomic analysis of the secretome of rice calli. Physiologia Plantarum 2009, 135:331-341.
30. Cho K., Shibato J., Agrawal G.K., Jung Y.H., Kubo A., Jwa N.S., et al. Integrated transcriptomics, proteomics, and metabolomics analyses to survey ozone responses in the leaves of rice seedling. Journal of Proteome Research 2008, 7:2471-2489.
31. Covshoff S., Majeran W., Liu P., Kolkman J.M., van Wijk K.J., Brutnell T.P. Deregulation of maize C4 photosynthetic development in a mesophyll cell-defective mutant. Plant Physiology 2008, 146:1469-1481.
32. Cui S., Huang F., Wang J., Xiao M., Cheng Y., Liu J. A proteomic analysis of cold stress responses in rice seedlings. Proteomics 2005, 5:3162-3172.
33. De Angelis M., Minervini F., Caputo L., Cassone A., Coda R., Calasso M.P., et al. Proteomic analysis by two-dimensional gel electrophoresis and starch characterization of Triticum turgidum L. var. durum cultivars for pasta making. Journal of Agricultural and Food Chemistry 2008, 56:8619-8628.
34. Donnelly B.E., Madden R.D., Ayoubi P., Porter D.R., Dillwith J.W. The wheat (Triticum aestivum L.) leaf proteome. Proteomics 2005, 5:1624-1633.
35. Dooki A.D., Mayer-Posner F.J., Askari H., Zaiee A.A., Salekdeh G.H. Proteomic responses of rice young panicles to salinity. Proteomics 2006, 6:6498-6507.
36. Fagnano M., Maggio A., Fumagalli I. Crops' responses to ozone in Mediterranean environments. Environmental Pollution 2009, 157:1438-1444.
37. Fang Y.W., Komatsu S., Furukawa T., Koshiba T., Kohno Y. Proteome analysis of proteins responsive to ambient and elevated ozone in rice seedlings. Agriculture Ecosystems & Environment 2008, 125:255-265.
38. FAO (2006). The state of food insecurity in the world. Rome: Food and Agriculture Organization of the United Nations.
39. FAO (2009). Crop prospects and food situation - No. 1. Rome: Food and Agriculture Organization of the United Nations.
40. Finnie C., Svensson B. Barley seed proteomics from spots to structures. J Proteomics 2009, 72:315-324.
41. Giordani C., Cecchi S., Zanchi C. Phytoremediation of soil polluted by nickel using agricultural crops. Environmental Management 2005, 36:675-681.
42. Hajduch M., Ganapathy A., Stein J.W., Thelen J.J. A systematic proteomic study of seed filling in soybean. Establishment of high-resolution two-dimensional reference maps, expression profiles and an interactive proteome database. Plant Physiology 2005, 137:1397-1419.
43. Hajheidari M., Eivazi A., Buchanan B.B., Wong J.H., Majidi I., Salekdeh G.H. Proteomics uncovers a role for redox in drought tolerance in wheat. Journal of Proteome Research 2007, 6:1451-1460.
44. Hart J.J., Welch R.M., Norvell W.A., Kochian L.V. Characterization of cadmium uptake, translocation and storage in near-isogenic lines of durum wheat that differ in grain cadmium concentration. New Phytologist 2006, 172:261-271.
45. Hashiguchi A., Sakata K., Komatsu S. Proteome analysis of early-stage soybean seedlings under flooding stress. Journal of Proteome Research 2009, 8:2058-2069.
46. Hashimoto M., Komatsu S. Proteomics analysis of rice seedling during cold stress. Proteomics 2007, 7:1293-1302.
47. Hashimoto M., Toorchi M., Matsushita K., Iwasaki Y., Komatsu S. Proteome analysis of rice root plasma membrane and detection of cold stress responsive proteins. Protein and Peptide Letters 2009, 16:685-697.
48. Heinemeyer J., Scheibe B., Schmitz U.K., Braun H.P. Blue native DIGE as a tool for comparative analyses of protein complexes. Journal of Proteomics 2009, 72:539-544.
49. Imin N., Kerim T., Rolfe B.G., Weinman J.J. Effect of early cold stress on the maturation of rice anthers. Proteomics 2004, 4:1873-1882.
50. IPCC (International Panel on Climate Change) (2007). Climate change 2007. http://www.ipcc.ch/.
51. Ismond K.P., Dolferus R., de Pauw M., Dennis E.S., Good A.G. Enhanced low oxygen survival in Arabidopsis through increased metabolic flux in the fermentative pathway. Plant Physiology 2003, 132:1292-1302.
52. Jellouli N., Ben Jouira H., Skouri H., Ghorbel A., Gourgouri A., Mliki A. Proteomic analysis of Tunisian grapevine cultivar Razegui under salt stress. Journal of Plant Physiology 2008, 165:471-481.
53. Jia X.Y., He L.H., Jing R.L., Li R.Z. Calreticulin: Conserved protein and diverse functions in plants. Physiologia Plantarum 2009, 136:127-138.
54. Jiang A.L., Cheng Y., Li J., Zhang W. A zinc-dependent nuclear endonuclease is responsible for DNA laddering during salt-induced programmed cell death in root tip cells of rice. Journal of Plant Physiology 2008, 165:1134-1141.
55. Kato-Noguchi H., Morokuma M. Ethanolic fermentation and anoxia tolerance in four rice cultivars. Journal of Plant Physiology 2007, 164:168-173.
56. 2-enriched rice under field conditions. New Phytologist 2001, 150:223-229.
57. Kim M., Lim J.H., Ahn C.S., Park K., Kim G.T., Kim W.T., et al. Mitochondria-associated hexokinases play a role in the control of programmed cell death in Nicotiana benthamiana. Plant Cell 2006, 18:2341-2355.
58. Kim D.W., Rakwal R., Agrawal G.K., Jung Y.H., Shibato J., Jwa N.S., et al. A hydroponic rice seedling culture model system for investigating proteome of salt stress in rice leaf. Electrophoresis 2005, 26:4521-4539.
59. Kleffmann T., von Zychlinski A., Russenberger D., Hirsch-Hoffmann M., Gehrig P., Gruissem W., et al. Proteome dynamics during plastid differentiation in rice. Plant Physiology 2007, 143:912-923.
60. Kley D., Kleinmann M., Sanderman H., Krupa S. Photochemical oxidants: State of the science. Environmental Pollution 1999, 100:19-42.
61. Kochian L.V., Hoeckenga O.A., Pineros M.A. How do crop plants tolerate acid soils? Mechanisms of aluminium tolerance and phosphorus efficiency. Annal Review of Plant Biology 2004, 55:459-493.
62. Koller A., Washburn M.P., Lange B.M., Andon N.L., Deciu C., Haynes P.A., et al. Proteomic survey of metabolic pathways in rice. Proceedings of the National Academy of Sciences of the United States of America 2002, 99:11969-11974.
63. Komatsu S., Ahsan N. Soybean proteomics and its application to functional analysis. Journal of Proteomics 2009, 72:325-336.
64. Komatsu S., Kojima K., Suzuki K., Ozaki K., Higo K. Rice proteome database based on two-dimensional polyacrylamide gel electrophoresis: Its status in 2003. Nucleic Acids Research 2004, 32:D388-D392.
65. Komatsu S., Muhammad A., Rakwal R. Separation and characterization of proteins from green and etiolated shoots of rice (Oryza sativa L.): Towards a rice proteome. Electrophoresis 1999, 20:630-636.
66. Komatsu S., Yamada E., Furukawa K. Cold stress changes the concanavalin A-positive glycosylation pattern of proteins expressed in the basal parts of rice leaf sheaths. Amino Acids 2009, 36:115-123.
67. Kottapalli K.R., Rakwal R., Satoh K., Shibato J., Kottapalli P., Iwahashi H., et al. Transcriptional profiling of indica rice cultivar IET 8585 (Ajaya) infected with bacterial leaf blight pathogen Xanthomonas oryzae pv. oryzae. Plant Physiology and Biochemistry 2007, 45:834-850.
68. Kundzewicz Z., Ulbrich U., Brücher T., Graczyk D., Krüger A., Leckebusch G., et al. Summer floods in central Europe - Climate change track?. Natural Hazards 2005, 36:165-189.
69. Lee D.G., Ahsan N., Lee S.H., Kang K.Y., Bahk J.D., Lee I.J., et al. A proteomic approach in analyzing heat-responsive proteins in rice leaves. Proteomics 2007, 7:3369-3383.
70. Lee D.G., Ahsan N., Lee S.H., Kang K.Y., Lee J.J., Lee B.H. An approach to identify cold-induced low-abundant proteins in rice leaf. Comptes Rendus Biologies 2007, 330:215-225.
71. Lee D.G., Ahsan N., Lee S.H., Lee J.J., Bahk J.D., Kang K.Y., et al. Chilling stress-induced proteomic changes in rice roots. Journal of Plant Physiology 2009, 166:1-11.
72. Li S., Assmann S.M., Albert R. Predicting essential components of signal transduction networks: A dynamic model of guard cell abscisic acid signaling. PLoS Biology 2006, 4:1732-1748.
73. Li G., Nallamilli B.R., Tan F., Peng Z. Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endosperm. Electrophoresis 2008, 29:604-617.
74. Li W.Y., Wong F.L., Tsai S.N., Phang T.H., Shao G., Lam H.M. Tonoplast-located GmCLC1 and GmNHX1 from soybean enhance NaCl tolerance in transgenic bright yellow (BY)-2 cells. Plant Cell and Environment 2006, 29:1122-1137.
75. Liu F., Vantoai T., Moy L., Bock G., Linford L.D., Quackenbush J. Global transcription profiling reveals novel insights into hypoxic response in Arabidopsis. Journal of Plant Physiology 2005, 137:1115-1129.
76. Lobell D.B., Field C.B. Global scale climate-crop yield relationships and the impacts of recent warming. Environmental Research Letters 2007, 2:014002.
77. Majeran W., Cai Y., Sun Q., van Wijk K.J. Functional differentiation of bundle sheath and mesophyll maize chloroplasts determined by comparative proteomics. Plant Cell 2005, 17:3111-3140.
78. Majeran W., Zybailov B., Ytterberg A.J., Dunsmore J., Sun Q., van Wijk K.J. Consequences of C4 differentiation for chloroplast membrane proteomes in maize mesophyll and bundle sheath cells. Molecular & Cellular Proteomics 2008, 7:1609-1638.
79. Majoul T., Bancel E., Triboï E., Ben Hamida J., Branlard G. Proteomic analysis of the effect of heat stress on hexaploid wheat grain: Characterization of heat-responsive proteins from total endosperm. Proteomics 2003, 3:175-183.
80. Meharg A.A. Arsenic in rice-understanding a new disaster for South-East Asia. Trends in Plant Science 2004, 9:415-417.
81. Mikami S., Kishimoto T., Hori H., Mitsui T. Technical improvement to 2D-PAGE of rice organelle membrane proteins. Bioscience Biotechnology and Biochemistry 2002, 66:1170-1173.
82. Mohanty A., Kathuria H., Ferjani A., Sakamoto A., Mohanty P., Murata N., et al. Transgenics of an elite indica rice variety Pusa Basmati 1 harbouring the codA gene are highly tolerant to salt stress. Theoretical and Applied Genetics 2002, 106:51-57.
83. Mooney B.P., Thelen J.J. High-throughput peptide mass fingerprinting of soybean seed protein: Automated workflow and utility of UniGene expressed sequence taq databases for protein identification. Phytochemistry 2004, 65:1733-1744.
84. Natera S.H., Ford K.L., Cassin A.M., Patterson J.H., Newbigin E.J., Bacic A. Analysis of the Oryza sativa plasma membrane proteome using combined protein and peptide fractionation approaches in conjunction with mass spectrometry. Journal of Proteome Research 2008, 7:1159-1187.
85. Nishikawa M., Hosokawa K., Ishiguro M., Minamioka H., Tamura K., Hara-Nishimura I., et al. Degradation of sphingoid long-chain base 1-phosphates (LCB-1Ps): Functional characterization and expression of AtDPL1 encoding LCB-1P lyase involved in the dehydration stress response in Arabidopsis. Plant and Cell Physiology 2008, 49:1758-1763.
86. Nohzadeh Malakshah S., Habibi Rezaei M., Heidari M., Salekdeh G.H. Proteomics reveals new salt responsive proteins associated with rice plasma membrane. Bioscience Biotechnology and Biochemistry 2007, 71:2144-2154.
87. Nozu Y., Tsugita A., Kamijo K. Proteomic analysis of rice leaf, stem and root tissues during growth course. Proteomics 2006, 6:3665-3670.
88. Oehrle N.W., Sarma A.D., Waters J.K., Emerich D.W. Proteomic analysis of soybean nodule cytosol. Phytochemistry 2008, 69:2426-2438.
89. Panter S., Thomson R., Bruxelles G.D., Laver D., Trevaskis B., Udvardi M. Identification with proteomics of novel proteins associated with peribacteroid membrane of soybean root nodules. Molecular Plant-Microbe Interactions 2000, 13:325-333.
90. Patterson J., Ford K., Cassin A., Natera S., Bacic A. Increased abundance of proteins involved in phytosiderophore production in boron-tolerant barley. Plant Physiology 2007, 144:1612-1631.
91. Peleman J.D., van der Voort J.R. Breeding by design. Trends in Plant Science 2003, 8:330-334.
92. Peng S., Huang J., Sheehy J.E., Laza R.C., Visperas R.M., Zhong X., et al. Rice yields decline with higher night temperature from global warming. Proceedings of the National Academy of Sciences of the United States of America 2004, 101:9971-9975.
93. 2. Physiologia Plantarum 2009, 135:29-42.
94. Probert M.E., Keating B.A. What soil constraints should be included in crop and forest model?. Agriculture Ecosystems & Environment 2000, 82:273-281.
95. 2]. Photosynthesis Research 2008, 97:155-166.
96. Rabello A.R., Guimarães C.M., Rangel P.H., da Silva F.R., Seixas D., de Souza E., et al. Identification of drought-responsive genes in roots of upland rice (Oryza sativa L.). BMC Genomics 2008, 9:485-497.
97. Renaut J., Bohler S., Hausman J.F., Hoffmann L., Sergeant K., Ahsan N., et al. The impact of atmospheric composition on plants: A case study of ozone and poplar. Mass Spectrometry Reviews 2009, 28:495-516.
98. Renaut J., Lutts S., Hoffmann L., Hausman J.F. Responses of poplar to chilling temperature: Proteomics and physiological aspects. Plant Biology 2004, 6:81-90.
99. Requejo R., Tena M. Proteome analysis of maize roots reveals that oxidative stress is a main contributing factor to plant arsenic toxicity. Phytochemistry 2005, 66:1519-1528.
100. Ribas-Carbo M., Taylor N.L., Giles L., Busquets S., Finnegan P.M., Day D.A., et al. Effects of water stress on respiration in soybean leaves. Plant Physiology 2005, 139:466-473.
101. Saab I.N., Sachs M.M. A flooding-induced xyloglucan endo-transglycosylase homolog in maize is responsive to ethylene and associated with aerenchyma. Plant Physiology 1996, 112:385-391.
102. Sairam R.K., Dharmar K., Chinnusamy V., Meena R.C. Waterlogging-induced increase in sugar mobilization, fermentation, and related gene expression in the roots of mung bean (Vigna radiata). Journal of Plant Physiology 2008, 166:602-616.
103. Sakamoto A., Alia A., Murata N. Metabolic engineering of rice leading to biosynthesis of glycinebetaine and tolerance to salt and cold. Plant Molecular Biology 1998, 38:1011-1019.
104. Sakata K., Ohyanagi H., Nobori H., Nakamura T., Hashiguchi A., Nanjo Y., et al. Soybean proteome database: A data resource for plant differential omics. Journal of Proteome Research 2009, 10.1021/pr900229.
105. Salekdeh G.H., Komatsu S. Crop proteomics: Aim at sustainable agriculture of tomorrow. Proteomics 2007, 7:2976-2996.
106. Sakuma Y., Maruyama K., Qin F., Osakabe Y., Shinozaki K., Yamaguchi-Shinozaki K. Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression. Proceedings of the National Academy of Sciences of the United States of America 2006, 103. 18822-18227.
107. Salt L.J., Wilde P.J., Georget D., Wellner N., Skeggs P.K., Mills E.N.C. Composition and surface properties of dough liquor. Journal of Cereal Science 2006, 43:284-292.
108. Sancho A.I., Gillabert M., Tapp H., Shewry P.R., Skeggs P.K., Mills E.N. Effect of environmental stress during grain filling on the soluble proteome of wheat (Triticum aestivum) dough liquor. Journal of Agricultural and Food Chemistry 2008, 56:5386-5393.
109. Satarug S., Baker J.R., Urbenjapol S., Haswell-Elkins M., Reilly P.E., Williams D.J., et al. A global perspective on cadmium pollution and toxicity in non-occupationally exposed population. Toxicology Letters 2003, 137:65-83.
110. Schneider T., Schellenberg M., Meyer S., Keller F., Gehrig P., Riedel K., et al. Quantitative detection of changes in the leaf-mesophyll tonoplast proteome in dependency of a cadmium exposure of barley (Hordeum vulgare L.) plants. Proteomics 2009, 9:2668-2677.
111. Sheehy, J. E., Mitchell, P. L., & Hardy, B. (Eds.). (2000). Redesigning rice photosynthesis to increase yield, Los Baños, Philippines (pp. 39-52). Makati City, Philippines/Amsterdam, The Netherlands: International Rice Research Institute/Elsevier Science.
112. Shi F., Yamamoto R., Shimamura S., Hiraga S., Nakayama N., Nakamura T., et al. Cytosolic ascorbate peroxidase 2 (cAPX 2) is involved in the soybean response to flooding. Phytochemistry 2008, 69:1295-1303.
113. Skylas D.J., Cordwell S.J., Hains P.G., Larsen M.R., Bassealm D.J., Walsh B.J., et al. Heat shock of wheat during grain filling: Characterization of proteins associated with heat-tolerance using a proteome approach. Journal of Cereal Science 2002, 35:175-188.
114. Song X., Ni Z., Yao Y., Xie C., Li Z., Wu H., et al. Wheat (Triticum aestivum L.) root proteome and differentially expressed root proteins between hybrid and parents. Proteomics 2007, 7:3538-3557.
115. Süle A., Vanrobaeys F., Hajós G., Van Beeumen J., Devreese B. Proteomic analysis of small heat shock protein isoforms in barley shoots. Phytochemistry 2004, 65:1853-1863.
116. Sulpice R., Tsukaya H., Nonaka H., Mustardy L., Chen T.H., Murata N. Enhanced formation of flowers in salt-stressed Arabidopsis after genetic engineering of the synthesis of glycine betaine. Plant Journal 2003, 36:165-176.
117. Tanaka N., Fujita M., Handa H., Murayama S., Uemura M., Kawamura Y., et al. Proteomics of the rice cell: Systematic identification of the protein populations in subcellular compartments. Molecular Genetics and Genomics 2004, 271:566-576.
118. Tanaka N., Mitsui S., Nobori H., Yanagi K., Komatsu S. Expression and function of proteins during development of the basal region in rice seedlings. Molecular & Cellular Proteomics 2005, 4:796-808.
119. Taniguchi Y., Ohkawa H., Masumoto C., Fukuda T., Tamai T., Lee K., et al. Overproduction of C4 photosynthetic enzymes in transgenic rice plants: An approach to introduce the C4-like photosynthetic pathway into rice. Journal of Experimental Botany 2008, 59:1799-1809.
120. Torres N.L., Cho K., Shibato J., Hirano M., Kubo A., Masuo Y., et al. Gel-based proteomics reveals potential novel protein markers of ozone stress in leaves of cultivated bean and maize species of Panama. Electrophoresis 2007, 28:4369-4381.
121. Vensel W.H., Tanaka C.K., Cai N., Wong J.H., Buchanan B.B., Hurkman W.J. Developmental changes in the metabolic protein profiles of wheat endosperm. Proteomics 2005, 5:1594-1611.
122. Virdi A.S., Thakur A., Dutt S., Kumar S., Singh P. A sorghum 85kDa heat stress-modulated protein shows calmodulin-binding properties and cross-reactivity to anti-Neurospora crassa Hsp 80 antibodies. FEBS Letters 2009, 583:767-770.
123. Voesenek L.A., Colmer T.D., Pierik R., Millenaar F.F., Peeters A.J. How plants cope with complete submergence. New Phytologist 2006, 170:213-226.
124. von Zychlinski A., Kleffmann T., Krishnamurthy N., Sjölander K., Baginsky S., Gruissem W. Proteome analysis of the rice etioplast: Metabolic and regulatory networks and novel protein functions. Molecular & Cellular Proteomics 2005, 4:1072-1084.
125. Vriezen W.H., Hulzink R., Mariani C., Voesenek L.A. 1-Aminocyclopropane-1-carboxylate oxidase activity limits ethylene biosynthesis in Rumex palustris during submergence. Plant Physiology 1999, 121:189-196.
126. Wheeler T.R., Craufurd P.Q., Ellis R.H., Porter J.R., Vara Prasad P.V. Temperature variability and the yield of annual crops. Agriculture Ecosystems & Environment 2000, 82:159-167.
127. Whiteman S.A., Nühse T.S., Ashford D.A., Sanders D., Maathuis F.J. A proteomic and phosphoproteomic analysis of Oryza sativa plasma membrane and vacuolar membrane. Plant Journal 2008, 56:146-156.
128. WWF (2008). The 2008 living planet report. Switzerland: World Wildlife Fund.
129. Xu C., Garrett W.M., Sullivan J., Caperna T.J., Natarajan S. Separation and identification of soybean leaf proteins by two-dimensional gel electrophoresis and mass spectrometry. Phytochemistry 2006, 67:2431-2440.
130. Yahata E., Maruyama-Funatsuki W., Nishio Z., Tabiki T., Takata K., Yamamoto Y., et al. Wheat cultivar-specific proteins in grain revealed by 2-DE and their application to cultivar identification of flour. Proteomics 2005, 5:3942-3953.
131. Yamaguchi-Shinozaki K., Shinozaki K. Transcriptional regulatory network in cellular responses and tolerance to dehydration and cold stresses. Annal Review of Plant Biology 2006, 57:781-803.
132. Yan S.P., Zhang Q.Y., Tang Z.C., Su W.A., Sun W.N. Comparative proteomic analysis provides new insight into chilling stress response in rice. Molecular & Cellular Proteomics 2006, 5:484-496.
133. Yang J.Y., Sun Y., Sun A.Q., Yi S.Y., Qin J., Li M.H., et al. The involvement of chloroplast HSP100/ClpB in the acquired thermotolerance in tomato. Plant Molecular Biology 2006, 62:385-395.
134. Yang Q., Wang Y., Zhang J., Shi W., Qian C., Peng X. Identification of aluminum-responsive proteins in rice roots by a proteomic approach: Cysteine synthase as a key player in Al response. Proteomics 2007, 7:737-749.
135. Yoshimura K., Masuda A., Kuwano M., Yokota A., Akashi K. Programmed proteome response for drought avoidance/tolerance in the root of a C(3) xerophyte (wild watermelon) under water deficits. Plant and Cell Physiology 2008, 49:226-241.
136. Zhang W., Zhou R.G., Gao Y.J., Zheng S.Z., Xu P., Zhang S.Q., et al. Molecular and genetic evidence for the key role of AtCaM3 in heat-shock signal transduction in Arabidopsis thaliana. Plant Physiology 2009, 149:1773-1784.
137. Zhao Z., Zhang W., Stanley B.A., Assmann S.M. Functional proteomics of Arabidopsis thaliana guard cells uncovers new stomatal signaling pathways. Plant Cell 2008, 20:3210-3226.
138. Zhu B., Ye C., Lü H., Chen X., Chai G., Chen J., et al. Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max). Journal of Plant Research 2006, 119:247-256.