A proteomic analysis of cold stress responses in rice seedlings

Proteomics

Volumn 5, Issue 12, 2005, Pages 3162-3172

  Cui, Suxia ^a   Huang, Fang ^b,d   Wang, Jie ^c   Ma, Xiao ^a   Cheng, Yongsheng ^a   Liu, Jinyuan ^a  

^a TSINGHUA UNIVERSITY   (China)

^b STOCKHOLM UNIVERSITY   (Sweden)

^c NATIONAL CENTER OF BIOMEDICAL ANALYSIS   (China)

^d Institute of Botany   (China)

Author keywords

Cold stress; Dynamic patterns; Functional proteome; Oryza sativa

Indexed keywords

ANTIOXIDANT; CHAPERONE; ENZYME; PROTEINASE; PROTEOME;

BIOSYNTHESIS; CELL WALL; CELLULAR DISTRIBUTION; CHLOROPLAST; COLD; CONFERENCE PAPER; CONTROLLED STUDY; ENERGY; FRACTIONATION; LOW TEMPERATURE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NONHUMAN; NUCLEOTIDE SEQUENCE; PLANT CELL; PLANT LEAF; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; RICE; SEEDLING; SIGNAL TRANSDUCTION; STRESS; TWO DIMENSIONAL GEL ELECTROPHORESIS; UPREGULATION;

5-METHYLTETRAHYDROFOLATE-HOMOCYSTEINE S-METHYLTRANSFERASE; AMINO ACID SEQUENCE; CHLOROPLASTS; COLD; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; IMAGE PROCESSING, COMPUTER-ASSISTED; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PLANT LEAVES; PLANT PROTEINS; PROTEOME; PROTEOMICS; SEEDLING; SEQUENCE HOMOLOGY, AMINO ACID; SPECTROMETRY, MASS, ELECTROSPRAY IONIZATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; TEMPERATURE; TEMPERATURE SENSE; UP-REGULATION;

ORYZA SATIVA;

EID: 23844548576     PISSN: 16159853     EISSN: None     Source Type: Journal    
DOI: 10.1002/pmic.200401148     Document Type: Conference Paper

References (55)

1. Xiong, L., Schumaker, K. S., Zhu, J. K., Plant Cell 2002, 14 Suppl, S165-S183.
2. Liang, Y., Journal of Yunan Agr. Uni., 1998, 13, 135-141.
3. Shinozaki, K. and Yamaguchi-Shinozaki, K. Curr. Opin. Plant Biol. 2000, 3, 217-223.
4. Thomashow, M. F., Annu. Rev. Plant Physiol. Plant Mol. Biol. 1999, 50, 571-599.
5. Thomashow, M. F., Plant Physiol. 2001, 125, 89-93.
6. Iba, K., Annu. Rev. Plant Biol. 2002, 53, 225-245.
7. Yu, J., Hu, S., Wang, J., Wong, G. K. et al., Science 2002, 296, 79-92.
8. Goff, S. A., Ricke, D., Lan, T. H., Presting, G. et al., Science 2002, 296, 92-100.
9. Rabbani, M. A., Maruyama, K., Abe, H., Khan, M. A. et al., Plant Physiol. 2003, 133, 1755-1767.
10. Gygi, S. P., Rochon, Y., Franza, B. R., Aebersold, R., Mol. Cell Biol. 1999, 19, 1720-1730.
11. Tian, Q., Stepaniants, S. B., Mao, M., Weng, L. et al., Mol. Cell. Proteomics 2004, in press.
12. Salekdeh, G. H., Siopongco, J., Wade, L. J., Ghareyazie, B. et al., Proteomics 2002, 2, 1131-1145.
13. Shen, S. H., Jing, Y. X., Kuang, T. Y., Proteomics 2003, 3, 527-535.
14. Riccardi, F., Gazeau, P., de Vienne, D., Zivy, M., Plant Physiol. 1998, 117, 1253-1263.
15. Canovas, F. M., Dumas-Gaudot, E., Recorbet, G., Jorrin, J. et al., Proteomics 2004, 4, 285-298.
16. Tsugita, A., Kamo, M., Methods Mol. Biol. 1999, 112, 95-97.
17. Giavalisco, P., Nordhoff, E., Lehrach, H., Gobom, J. et al., Electrophoresis 2003, 24, 207-216.
18. Peterson, G. L., Anal. Biochem. 1977, 83, 346-356.
19. Wessel, D., Flugge, U. I., Anal. Biochem. 1984, 138, 141-143.
20. Huang, F., Parmryd, I., Nilsson, F., Persson, A. L. et al., Mol. Cell. Proteomics 2002, 1, 956-966.
21. Laemmli, U. K., Nature 1970, 227, 680-685.
22. Fulda, S., Huang, F., Nilsson, F., Hagemann, M. et al., Eur. J. Biochem. 2000, 267, 5900-5907.
23. Jin, B. F., He, K., Wang, H. X., Wang, J. et al., Oncogene 2003, 22, 4819-4830.
24. Yan, J. X., Wait, R., Berkelman, T., Harry, R. A. et al., Electrophoresis 2000, 21, 3666-3672.
25. Xie, G. S., Liu, S. K., Takano, T., You, Z. B. et al., Acta Genetica Sinica 2002, 29, 1078-1084.
26. Wolucka, B. A., Persiau, G., Van Doorsselaere, J., Davey, M. W. et al., Proc. Natl. Acad. Sci. USA 2001, 98, 14843-14848.
27. Rasmusson, A. G., Heiser, V., Irrgang, K. D., Brennicke, A. et al., Plant Cell Physiol. 1998, 39, 373-381.
28. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D. et al., Nature Genet. 2000, 25, 25-29.
29. Emanuelsson, O., Nielsen, H., Brunak, S., von Heijne, G., J. Mol. Biol. 2000, 300, 1005-1016.
30. Sanchez-Ballesta, M. T., Lafuente, M. T., Zacarias, L., Granell, A., Physiol. Plant 2000, 108, 382-389.
31. Deak, M., Horvath, G. V., Davletova, S., Torok, K. et al., Nat. Biotechnol. 1999, 17, 192-196.
32. Roxas, V. P., Lodhi, S. A., Garrett, D. K., Mahan, J. R. et al., Plant Cell Physiol. 2000, 41, 1229-1234.
33. Marrs, K. A., Annu. Rev. Plant Physiol. Plant Molec. Biol. 1996, 47, 127-158.
34. Edwards, R., Dixon, D. P., Walbot, V., Trends Plant Sci. 2000, 5, 193-198.
35. Leone, A., Costa, A., Tucci, M., Grillo, S., Plant Physiol. 1994, 106, 703-712.
36. Leyva, A., Jarillo, J. A., Salinas, J., Martinezzapater, J. M., Plant Physiol. 1995, 108, 39-46.
37. Kawamura, Y., Uemura, M., Plant J. 2003, 36, 141-154.
38. Marana, C., Garcia-Olmedo, F., Carbonero, P., Gene 1990, 88, 167-172.
39. Roxas, V. P., Smith, R. K., Jr., Allen, E. R., Allen, R. D., Nat. Biotechnol. 1997, 15, 988-991.
40. Binh, L. T., Oono, K., Plant Physiol. 1992, 99, 1146-1150.
41. Espartero, J., Pintortoro, J. A., Pardo, J. M., Plant Mol. Biol. 1994, 25, 217-227.
42. Hartl, F. U., Nature 1996, 381, 571-579.
43. Bourdineaud, J. P., Nehme, B., Tesse, S., Lonvaud-Funel, A., Appl. Environ. Microbiol. 2003, 69, 2512-2520.
44. Viitanen, P. V., Schmidt, M., Buchner, J., Suzuki, T. et al., J. Biol. Chem. 1995, 270, 18158-18164.
45. Wickner, S., Maurizi, M. R., Gottesman, S., Science 1999, 286, 1888-1893.
46. Amor, Y., Haigier, C. H., Johnson, S., Wainscott, M. et al., Proc. Natl. Acad. Sci. USA 1995, 92, 9353-9357.
47. Hahlbrock, K., Scheel, D., Annu. Rev. Plant Physiol. Plant Molec. Biol. 1989, 40, 347-369.
48. Chalker-Scott, L., Fuchigami, L. H., in: Li, P. H. (Ed.), Low Temperature Stress Physiology in Crops, CRC press Inc., Florida 1989, pp. 67-79.
49. Ravanel, S., Gakiere, B., Job, D., Douce, R., Proc. Natl. Acad. Sci. USA 1998, 95, 7805-7812.
50. Wang, K. L. C., Li, H., Ecker, J. R., Plant Cell 2002, 14, S131-S151.
51. Shen, W. Y., Nada, K., Tachibana, S., Plant Physiol. 2000, 124, 431-439.
52. Bouchereau, A., Aziz, A., Larher, F., Martin-Tanguy, J., Plant Sci. 1999, 140, 103-125.
53. Noctor, G., Foyer, C. H., Ann. Rev. Plant Physiol. Plant Mol. Biol. 1998, 49, 249-270.
54. Sunkar, R., Bartels, D., Kirch, H. H., Plant J. 2003, 35, 452-464.
55. Friso, G., Giacomelli, L., Ytterberg, A. J., Peltier, J. B. et al., Plant Cell 2004, 16, 478-499.