Short-term temperature effect on the HRMAS spectra of human brain tumor biopsies and their pattern recognition analysis

Magnetic Resonance Materials in Physics, Biology and Medicine

Volumn 23, Issue 4, 2010, Pages 203-215

  Valverde Saubí, Daniel ^a,d   Candiota, Ana Paula ^a,d   Molins, Maria Antònia ^b   Feliz, Miguel ^b   Godino, Óscar ^c,d   Dávila, Myriam ^a,d   Acebes, Juan José ^c,d   Arús, Carles ^a,d  

^a UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^b UNIVERSITY OF BARCELONA   (Spain)

^c HOSPITAL UNIVERSITARI DE BELLVITGE   (Spain)

^d BIOMATERIALES Y NANOMEDICINA CIBER BBN   (Spain)

Author keywords

Classifier development; Diagnosis; NMR; Spectral pattern changes

Indexed keywords

EID: 77956407164     PISSN: 09685243     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10334-010-0218-7     Document Type: Article

References (46)

1. MC Martínez-Bisbal L Martí-Bonmatí J Piqué A Revert P Ferrer J Llácer M Piotto O Assemat B Celda 2004 1H and 13C HRMAS spectroscopy of intact biopsy samples ex vivo and in vivo 1H MRS study of human high grade gliomas NMR Biomed 17 191 205 10.1002/nbm.888 15229932 (Pubitemid 39089246)
2. PK Valonen JL Griffin KK Lehtimäki T Liimatainen JK Nicholson OHJ Gröhn RA Kauppinen 2005 High-resolution magic-angle-spinning 1H NMR spectroscopy reveals different responses in choline-containing metabolites upon gene therapy-induced programmed cell death in rat brain glioma NMR Biomed 18 252 259 10.1002/nbm.955 15884096 (Pubitemid 40936445)
3. KS Opstad BA Bell JR Griffiths FA Howe 2008 An investigation of human brain tumour lipids by high-resolution magic angle spinning 1H MRS and histological analysis NMR Biomed 21 677 685 10.1002/nbm.1239 18186027
4. V Righi A Mucci L Schenetti A Bacci R Agati M Leonardi R Schiavina G Martorana G Liguori C Calabrese E Boschetti S Bonora V Tugnoli 2009 Identification of mobile lipids in human cancer tissues by ex vivo diffusion edited HR-MAS MRS Oncol Reports 22 1493 1496
5. LL Cheng MJ Ma L Becerra T Ptak I Tracey A Lackner RG González 1997 Quantitative neuropathology by high resolution magic angle spinning proton magnetic resonance spectroscopy Proc Natl Acad Sci USA 94 6408 6413 10.1073/pnas.94.12.6408 9177231 (Pubitemid 27270698)
6. LL Cheng IW Chang DN Louis RG Gonzalez 1998 Correlation of high-resolution magic angle spinning proton magnetic resonance spectroscopy with histopathology of intact human brain tumor specimens Cancer Res 58 1825 1832 9581820
7. SD Huhn CM Szabo JH Gass AE Manzi 2004 Metabolic profiling of normal and hypertensive rat kidney tissues by hrMAS-NMR spectroscopy Anal Bioanal Chem 378 1511 1519 10.1007/s00216-003-2477-x 15214411 (Pubitemid 40877681)
8. MM Mahon AD Williams WP Soutter IJ Cox GA McIndoe GA Coutts R Dina NM deSouza 2004 1H magnetic resonance spectroscopy of invasive cervical cancer: an in vivo study with ex vivo corroboration NMR Biomed 17 1 9 10.1002/nbm.830 15011245 (Pubitemid 38332095)
9. I Barba ME Cabañas C Arús 1999 The relationship between nuclear magnetic resonance-visible lipids, lipid droplets, and cell proliferation in cultured C6 cells Cancer Res 59 1861 1868 10213493
10. MR Quintero ME Cabañas C Arús 2006 A possible cellular explanation for the NMR-visible mobile lipid (ML) changes in cultured C6 glioma cells with growth Biochim Biophys Acta 1771 31 44 17150408
11. AR Tate PJD Foxall E Holmes D Moka M Spraul JK Nicholson JC Lindon 2000 Distinction between normal and renal cel carcinoma kidney cortical biopsy samples using pattern recognition of 1H magic angle spinning (MAS) NMR spectra NMR Biomed 13 64 71 10.1002/(SICI)1099-1492(200004)13:2<64::AID-NBM612>3. 0.CO;2-X (Pubitemid 30230803)
12. MM Mahon NM deSouza R Dina WP Soutter GA McIndoe AD Williams IJ Cox 2004 Preinvasive and invasive cervical cancer: an ex vivo proton magic angle spinning magnetic resonance spectroscopy study NMR Biomed 17 144 153 10.1002/nbm.869 15137039 (Pubitemid 38684563)
13. B Sitter U Sonnewald M Spraul HE Fjösne IS Gribbestad 2002 High-resolution magic angle spinning MRS of breast cancer tissue NMR Biomed 15 327 337 10.1002/nbm.775 12203224 (Pubitemid 34960100)
14. B Sitter S Lundgren TF Bathen J Halgunset IS Fjosne HE Gribbestad 2006 Comparison of HR MAS MR spectroscopic profiles of breast cancer with clinical parameters NMR Biomed 19 30 40 10.1002/nbm.992 16229059 (Pubitemid 43250787)
15. TM Tsang JL Griffin J Haselden C Fish E Holmes 2005 Metabolic characterization of distinct neuroanatomical regions in rats by magic angle spinning 1H nuclear magnetic resonance spectroscopy Magn Reson Med 53 1018 1024 10.1002/mrm.20447 15844164 (Pubitemid 40627776)
16. V Righi JM Roda J Paz A Mucci V Tugnoli G Rodriguez-Tarduchy L Barrios L Schenetti S Cerdán ML García-Martín 2009 1H HR-MAS and genomic analysis of human tumor biopsies discriminate between high and low grade astrocytomas NMR Biomed 22 6 629 637 10.1002/nbm.1377 19322812
17. Braun S, Kalinowski H, Berger S (1998) 150 and more basic NMR experiments. Wiley-VCH, Weinheim
18. EL Hahn 1950 Spin echoes Phys Rev 80 4 580 10.1103/PhysRev.80.580
19. HY Carr EM Purcell 1954 Effects of diffusion on free precession in nuclear magnetic resonance experiments Phys Rev 94 3 630 10.1103/PhysRev.94.630
20. 1H MRS spectra from brain tumours NMR Biomed 11 177 191 10.1002/(SICI)1099-1492(199806/08)11:4/5<177::AID-NBM534>3.0.CO;2-U 9719572 (Pubitemid 28364091)
21. Team RDC: (2006) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria
22. Fukunaga K (1990) Introduction to statistical pattern recognition. Elsevier, Amsterdam
23. G Hagberg 1998 From magnetic resonance spectroscopy to classification of tumours. A review of pattern recognition methods NMR Biomed 11 148 156 10.1002/(SICI)1099-1492(199806/08)11:4/5<148::AID-NBM511>3.0.CO;2-4 9719569 (Pubitemid 28364088)
24. I Martínez-Pérez A Moreno J Alonso J Aguas G Conesa A Capdevila C Arús 1997 Diagnosis of brain abcess by magnetic resonance spectroscopy. Report of two cases J Neurosurg 86 708 713 10.3171/jns.1997.86.4. 0708 9120637
25. 1H MRS markers of tumour growth in intrasplenic tumours and liver metastasis induced by injection of HT-29 cells in nude mice spleen NMR Biomed 11 93 106 10.1002/(SICI)1099-1492(199805)11:3<93::AID-NBM520>3.0.CO;2-H 9699492 (Pubitemid 28334251)
26. 1H NMR spectral pattern of percloric acid extracts of C6 cells with growth NMR Biomed 19 223 230 10.1002/nbm.1024 16485320
27. JH Chen BM Enloe P Weybright N Campbell D Dorfman D Fletcher DG Cory S Singer 2002 Biochemical correlates of thiazolidinedione-induced adipocyte differentiation by high- resolution magic angle spinning NMR spectrosc Magn Reson Med 48 602 610
28. 1H NMR detected proteins in the rat cerebral cortex in vivo and in vitro NMR Biomed 6 242 247 10.1002/nbm.1940060403 8217525
29. KS Opstad SW Provencher BA Bell JR Griffiths FA Howe 2003 Detection of elevated glutathione in meningiomas by quantitative in vivo 1H MRS Magn Reson Med 49 632 637 10.1002/mrm.10416 12652533 (Pubitemid 36389972)
30. S Grande AM Luciani A Rosi A Palma C Giovannini O Sapora L Guidoni V Viti 2007 Metabolism of glutathione in tumour cells as evidenced by 1H MRS FEBS Lett 581 4 637 643 10.1016/j.febslet.2007.01.025 17257597 (Pubitemid 46216289)
31. LL Cheng DC Anthony AR Comite PM Black AA Tzika RG González 2000 Quantification of microheterogeneity in glioblastoma multiforme with ex vivo high-resolution magic-angle spinning (HRMAS) proton magnetic resonance spectroscopy Neuro Oncol 2 87 95 10.1215/15228517-2-2-87 11303625
32. V Tugnoli L Schenetti A Mucci F Parenti R Cagnoli V Righi A Trinchero L Nocetti C Toraci L Mavilla G Trentini E Zunarelli MR Tosi 2006 Ex vivo HR-MAS MRS of human meningiomas: a comparison with in vivo 1H MR spectra Int J Mol Med 18 859 869 17016616
33. C Remy N Fouilhe I Barba E Sam-Lai H Lahrech MG Cucurella M Izquierdo A Moreno A Ziegler R Massarelli M Decorps C Arús 1997 Evidence that mobile lipids detected in rat brain glioma by 1H nuclear magnetic resonance correspond to lipid droplets Cancer Res 57 407 414 9012466
34. AC Kuesel GR Sutherland W Halliday IC Smith 1994 1H MRS of high grade astrocytomas: mobile lipid accumulation in necrotic tissue NMR Biomed 7 149 155 10.1002/nbm.1940070308 8080717
35. A Kuesel S Donnelly W Halliday G Sutherland I Smith 1994 Mobile lipids and metabolic heterogeneity of brain tumours as detectable by ex vivo 1H MR spectroscopy NMR Biomed 7 172 180 10.1002/nbm.1940070404 7946995
36. JA Hamilton DM Small JS Parks 1983 1H NMR studies of lymph chylomicron and very low density lipoproteins from nonhuman primates J Biol Chem 25 1172 1179
37. JS Parks H Hauser 1996 Low density lipoprotein particle size and core cholesteryl ester physical state affect the proton NRM magnetic environment of fatty acid methylene and methyl nuclei J Lipid Res 37 1289 1297 8808763
38. RJ Deckelbaum GG Shipley DM Small 1977 Structure and interactions of lipids in human plasma low density lipoproteins J Biol Chem 25 744 754
39. C Arús YC Chang M Bárány 1985 Proton nuclear magnetic resonance spectra of excised rat brain. Assignment of resonances Physiol Chem Phys Med NMR 17 23 33 4034678
40. A Wright K Opstad J Griffiths F Howe 2006 Quantitative total correlation spectroscopy of brain tumour tissue with high resolution magic angle spinning NMR Magn Reson Mater Phy 19 Suppl 1 52 53
41. 1H HR-MAS spectroscopy Magn Reson Med 55 6 1257 1264 10.1002/mrm.20909 16685733 (Pubitemid 43856762)
42. KS Opstad BA Bell JR Griffiths FA Howe 2008 An assessment of the effects of sample ischaemia and spinning time on the metabolic profile of brain tumour biopsy specimens as determined by high-resolution magic angle spinning (1)H NMR NMR Biomed 21 1138 1147 10.1002/nbm.1296 18666093
43. A Korshunov R Sycheva A Golanov 2006 Genetically distinct and clinically relevant subtypes of glioblastoma defined by array-based comparative genomic hybridization (array-CGHI) Acta Neuropathol 111 465 474 10.1007/s00401-006-0057- 9 16557391
44. Y Liang M Diehn N Watson AW Bollen KD Aldape MK Nicholas KR Lamborn MS Berger D Botstein PO Brown MA Israel 2006 Gene expresion profiling reveals molecularly and clinically distinct subtypes of glioblastoma multiforme Proc Natl Acad Sci USA 102 5814 5819 10.1073/pnas.0402870102
45. A Li J Walling S Ahn Y Kotliarov Q Su M Quezado JC Oberholtzer J Park JC Zenklusen H Fine 2009 Unsupervised analysis of transcriptomic profiles reveals six glioma subtypes Cancer Res 69 2091 2099 10.1158/0008-5472.CAN-08-2100 19244127
46. JM García-Gómez S Tortajada C Vidal M Julià- Sapé J Luts A Moreno-Torres SV Huffel C Arús M Robles 2008 The effect of combining two echo times in automatic brain tumor classification by MRS NMR Biomed 21 10 1112 1125 10.1002/nbm.1288 18759382