Towards a method for automated classification of 1H MRS spectra from brain tumours

NMR in Biomedicine

Volumn 11, Issue 4-5, 1998, Pages 177-191

  Tate, A R ^a,b   Griffiths, J R ^c   Martinez Perez I ^b   Moreno, A ^d   Barba, I ^b   Cabanas M E ^b   Watson, D ^a   Alonso, J ^d   Bartumeus, F ^e   Isamat, F ^f   Ferrer, I ^f   Vila, F ^g   Ferrer, E ^h   Capdevila, A ^d   Arus C ^b  

^a UNIVERSITY OF SUSSEX   (United Kingdom)

^b UNIVERSITAT AUTÒNOMA DE BARCELONA   (Spain)

^c ST GEORGE'S UNIVERSITY OF LONDON   (United Kingdom)

^d Centre Diagnostic Pedralbes   (Spain)

^e HOSPITAL DE LA SANTA CREU I SANT PAU   (Spain)

^f HOSPITAL UNIVERSITARI DE BELLVITGE   (Spain)

^g HOSPITAL MÚTUA DE TERRASSA   (Spain)

^h HOSPITAL CLÍNIC   (Spain)

Author keywords

Brain tumours; Cancer; Cystic lesion; Metabolite pattern; Pattern recognition

Indexed keywords

ANALYTIC METHOD; ARTICLE; AUTOMATION; BRAIN TUMOR; CANCER GRADING; CONTRAST ENHANCEMENT; DISCRIMINANT ANALYSIS; HUMAN; PATTERN RECOGNITION; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE; TECHNIQUE;

BRAIN NEOPLASMS; DATA INTERPRETATION, STATISTICAL; HUMANS; IMAGE PROCESSING, COMPUTER-ASSISTED; NUCLEAR MAGNETIC RESONANCE, BIOMOLECULAR; PATTERN RECOGNITION, AUTOMATED;

ILEX COOKII;

EID: 7344242592     PISSN: 09523480     EISSN: None     Source Type: Journal    
DOI: 10.1002/(SICI)1099-1492(199806/08)11:4/5<177::AID-NBM534>3.0.CO;2-U     Document Type: Article

References (54)

1. Webb P. G., Sailasuta N., Kohler S. J., Raidy T., Moats R. A. and Hurd R. Automated single-voxel proton MRS: technical development and multisite verification. Magn. Reson. Med. 31, 365-373 (1994).
2. Hagberg G., Burlina A. P., Mader I., Roser W., Radue E. W. and Seelig J. In vivo proton MR spectroscopy of human gliomas: definition of metabolic coordinates for multi-dimensional classification. Magn. Reson. Med. 34, 242-252 (1995).
3. Preul M. C., Caramanos Z., Collins D. L., Villemure J G., Leblanc R., Olivier A., Pokrupa R. and Arnold D. L. Accurate, noninvasive diagnosis of human brain tumors by using proton magnetic resonance spectroscopy. Nature Med. 2, 323-325 (1996).
4. Usenius J. P., Tuohimetsa S., Vainio P., Ala-Korpela M., Hiltunen Y. and Kauppinen R. A. Automated classification of human brain tumors by neural network analysis using in vivo magnetic resonance spectroscopic metabolite phenotypes. Neuroreport 7, 1597-1600 (1996).
5. Shimizu H., Kumabe T., Tominaga T., Kayama T., Hara K., Ono Y., Sato K., Arai N., Fujiwara S. and Yoshimoto T. Noninvasive evaluation of malignancy of brain tumors with proton MR spectroscopy. Am. J. Neuroradiol. 17, 737-747 (1996).
6. 1H magnetic resonance spectroscopy and multidimensional metabolic classification. MAGMA 5, 179-183 (1997).
7. Preul M. C., Caramanos Z., Leblanc R., Villemure J. G. and Arnold D. L. Using pattern recognition analysis of in vivo proton MRSI data to improve the diagnosis and surgical management of patients with brain tumours. NMR Biomed. 11, 192-200 (1998).
8. Kazner E., Wende S., Grumme T., Stochdorph O., Felix R. and Claussen C. Computed Tomography and Magnetic Resonance Tomography of Intracranial Tumors, 2nd Edn. Springer Berlin (1989).
9. Osborn A. G. Diagnostic Neuroradiology. Mosby-Year Book, St. Louis (1994).
10. Yock Jr D. H. Magnetic Resonance Imaging of CNS Disease. Mosby-Year Book, St. Louis (1995).
11. 1H MRS of human brain abscesses in vivo and in vitro. Magn. Reson. Med. 34, 508-514 (1995).
12. Martínez-Pérez I., Moreno A., Alonso J., Aguas J., Conesa G., Capdevila A. and Arús C. Diagnosis of brain abscess by magnetic resonance spectroscopy. Report of two cases. J. Neurosurgery 86, 708-713 (1997).
13. 1H MR spectroscopy in patients with metastatic brain tumors: a multicenter study. Magn. Reson. Med. 33, 818-826 (1995).
14. 1H MR spectroscopy detection of lipids and lactate in metastatic brain tumors. NMR Biomed. 9, 65-71 (1996).
15. Negendank W. G., Sauter R., Brown T. R., Evelhoch J. L., Falini A., Gotsis E. D., Heerschap A., Kamada K., Lee B. C., Mengeot M. M., Moser E., Padavic-Shaller K. A., Sanders J. A., Spraggins T. A., Stillman A. E., Terwey B., Vogl T. J., Wicklow K. and Zimmerman R. A. Proton magnetic resonance spectroscopy in patients with glial tumors: a multicenter study. J. Neurosurgery 84, 449-458 (1996).
16. 13C NMR spectra using statistical pattern recognition and wavelets. Magn. Reson. Med. 35, 834-840 (1996).
17. Tate A. R., Crabb S., Griffiths J. R., Howells S. L., Mazucco R. A., Rodrigues L. M. and Watson D. Lipid metabolite peaks in pattern recognition analysis of tumour in vivo MR spectra. Anticancer Res. 16, 1575-1580, (1996).
18. 1H spectra of thyroid neoplasms. Magn. Reson. Med. 33, 257-263 (1995).
19. 1H MR spectra of biopsies from untreated and recurrent ovarian cancer using linear discriminant analysis. Magn. Reson. Med. 38, 569-576 (1997).
20. SPSS Inc. SPSSX User's Guide, 3rd Edn. SPSS, Chicago (1987).
21. Sharaf M. A., Iliman D. L and Kowalski B. R. Chemometrics. Wiley, London (1986).
22. Tate A. R. Statistical pattern recognition for the analysis of biomedical magnetic resonance spectra. J. Magn. Reson. Analysis 3, 63-78 (1997).
23. Wu W., Walczak B., Massart D. L, Prebble K. A. and Last I. R. Spectral transformation and wavelength selection in near-infrared spectra classification. Analytica Chimica Acta 315, 243-255 (1995).
24. Miller A. J. Subset Selection in Regression. Chapman & Hall, London (1990).
25. 1H nuclear magnetic resonance spectra by the application of chemometric techniques. Magn. Reson. Med. 28, 214-236 (1992).
26. 1H nuclear magnetic resonance spectra of human urine from normal and pathological states. Analy. Biochem. 220, 284-296 (1994).
27. Hagberg G. From magnetic resonance spectroscopy to classification of tumors. A review of pattern recognition methods. NMR Biomed. 11, 148-156 (1998).
28. Griffiths J. R. A multicentre trial on MR spectroscopy of human tissue biopsies. In Eurospin Annual Report, pp. 295-299. Istituto Superiore di Sanita, Rome, (1996).
29. Sharp J. C. and Leach M. O. Conformal NMR spectroscopy: accurate localisation to non-cuboidal volumes with optimum SNR. Magn. Reson. Med. 11, 376-388 (1989).
30. Soltanian-Zadeh H., Peck D. J., Windham J. P. and Mikkelsen T. Brain tumor segmentation and characterization by pattern analysis of multispectral NMR images. NMR Biomed. 11, 201-208 (1998).
31. Pijnaapel W W. F., van den Boogaart A., de Beer R. and van Ormondt D. SVD-based quantification of magnetic resonance signals. J. Magn. Reson. 97, 122-134 (1992).
32. 1H magnetic resonance spectra, in Mathematics in Signal Processing III pp. 175-195. Clarendon Press, Oxford (1994).
33. van den Boogaart A. and Vanhamme L. MRUI Manual v. 96.3. A user's guide to the Magnetic Resonance User Interface Software Package. Delft Technische Universiteit Press, Delft (1997).
34. Klose U. In vivo proton spectroscopy in presence of eddy currents. Magn. Reson. Med. 14, 26-30 (1990).
35. de Graaf A. A. and Boveé W. M. M. J. QUALITY: quantification improvement by converting to the Lorentzian type. Magn. Reson. Med. 13, 343-357 (1990).
36. Chen C.-N. and Kan L.-S. An iterative phase correction program for nuclear magnetic resonance (NMR) spectra. Comput. Meth. Programs Biomed. 26, 81-84 (1988).
37. de Certaines J. D., Bovée W. M. M. J. and Podo F. editors. Magnetic Resonance Spectroscopy in Biology and Medicine. Pergamon Press, New York (1992).
38. 1H magnetic resonance spectroscopy. Magn. Reson. Med. 33, 862-867 (1995).
39. Kowalski B. R. and Wold S. Pattern recognition in chemistry. In Handbook of Statistics, ed. by Krishnaiah P. R. and Kanal, L. N. Vol. 2, pp. 673-697. North Holland Publishing Company (1982).
40. Massart D. L., Vandeginste B. G. M., Deming S. N., Michotte Y. and Kaufman L. Chemometrics: A Textbook. Elsevier, Amsterdam (1988).
41. 1H NMR spectroscopy of urine combined with pattern recognition. NMR Biomed. 11, 235-244 (1998).
42. Kleihues P., Burger P. C. and Scheithauer B. W. Histological typing of tumours of the central nervous system 2nd Ed. Springer Berlin (1993).
43. Maudsley A. A. Spectral lineshape determination by self-deconvolution. J. Magn. Reson. Series B 106, 47-57 (1995).
44. Tate A. R. Pattern Recognition Analysis of In Vivo Magnetic Resonance Spectra. PhD thesis. University of Sussex, School of Cognitive and Computing Sciences (1996).
45. 1H spectra of human brain tumours. Proceedings of the Society of Magnetic Resonance Fifth Scientific Meeting. p. 1129 (1997).
46. Classification panel on discriminant analysis and clustering. Discriminant analysis and clustering. Statistical Sci. 4, 34-69 (1989).
47. Rémy C., Arús C., Ziegler A., Sam-Laï E., Moreno A., Le Fur Y. and Décorps M. In vivo, ex vivo and in vitro one and two dimensional nuclear magnetic resonance spectroscopy of a glioma in rat brain: assignment of resonances. J. Neurochem. 62, 166-179 (1994).
48. 1H NMR spectra of colon tumors, normal mucosa and their perchloric acid extracts: decreased levels of myo-inositol in tumors can be detected in intact biopsies. NMR Biomed. 8, 33-45 (1996).
49. 1H NMR spectra from perchloric acid extracts of human brain tumour biopsies. Magn. Reson. Med. (in press).
50. 1H nuclear magnetic resonance spectra from human brain tumour biopsies. NMR Biomed. 11, 217-224 (1998).
51. Mader I., Roser W., Hagberg G., Schneider M., Sauter R., Seelig J., Radue E. W. and Steinbrich W. Proton chemical shift imaging, metabolic maps, and single voxel spectroscopy of glial tumors. MAGMA 4, 139-150 1996.
52. 1H nuclear magnetic resonance correspond to lipid droplets. Cancer Res. 57, 407-417 1997.
53. 1H MRS of high grade astrocytoma: mobile lipids accumulation in necrotic tissue. NMR Biomed. 7, 149-155 1994.
54. Graeber T. G., Osmanian C., Jacks T., Housman D. E., Koch C. J., Lowe S. W. and Giaccia A. J. Hypoxia-mediated selection of cells with diminished apoptotic potential in solid tumours. Nature 379, 88-91 1996.