Proteomic analysis of B-cell malignancies

Journal of Proteomics

Volumn 73, Issue 10, 2010, Pages 1804-1822

  Boyd, Robert S ^a   Dyer, Martin J S ^a   Cain, Kelvin ^a  

^a UNIVERSITY OF LEICESTER   (United Kingdom)

Author keywords

B cell lymphomas; Plasma membrane; Proteomics

Indexed keywords

B LYMPHOCYTE RECEPTOR; CELL SURFACE PROTEIN; MEMBRANE PROTEIN; PHOSPHOPROTEIN; PROTEOME; REGULATOR PROTEIN;

B CELL LYMPHOMA; B LYMPHOCYTE; BINDING AFFINITY; CELL FRACTIONATION; CELL MEMBRANE; GEL ELECTROPHORESIS; HUMAN; LIPID RAFT; MANTLE CELL LYMPHOMA; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FUNCTION; PROTEIN PURIFICATION; QUANTITATIVE ANALYSIS; REVIEW;

B-LYMPHOCYTES; CELL FRACTIONATION; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; HUMANS; LEUKEMIA, LYMPHOCYTIC, CHRONIC, B-CELL; LYMPHOMA, B-CELL; LYMPHOMA, MANTLE-CELL; MEMBRANE MICRODOMAINS; PHOSPHOPROTEINS; PROTEOMICS; TUMOR MARKERS, BIOLOGICAL;

EID: 77956404705     PISSN: 18743919     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jprot.2010.03.010     Document Type: Review

References (87)

1. Boyd R.S., Jukes-Jones R., Walewska R., Brown D., Dyer M.J., Cain K. Mol Cell Proteomics 2009, 8:1501-1515.
2. Capasso M., Bhamrah M.K., Henley T., Boyd R.S., Langlais C., Cain K., et al. Nat Immunol 2010, 11:265-272.
3. Cochran D.A., Evans C.A., Blinco D., Burthem J., Stevenson F.K., Gaskell S.J., et al. Mol Cell Proteomics 2003, 2:1331-1341.
4. Rees-Unwin K.S., Faragher R., Unwin R.D., Adams J., Brown P.J., Buckle A.M., et al. Br J Haematol 2009, 148:534-543.
5. Swerdlow S.H., Campo E., Harris N.L., Jaffe E.S., Pileri S.A., Stein H., et al. Who Classification of Tumours of the Haematopoetic and Lymphoid Tissues 2008, Lyon, IARC. 4th edition.
6. Saito M., Gao J., Basso K., Kitagawa Y., Smith P.M., Bhagat G., et al. Cancer Cell 2007, 12:280-292.
7. Jares P., Colomer D., Campo E. Nat Rev Cancer 2007, 7:750-762.
8. Boelens J., Philippe J., Offner F. Leuk Res 2007, 31:719-720.
9. Smit L.A., Hallaert D.Y., Spijker R., de G.B., Jaspers A., Kater A.P., et al. Blood 2007, 109:1660-1668.
10. Joubert-Caron R., Caron M. Mass Spectrom Rev 2005, 24:455-468.
11. Cristea I.M., Gaskell S.J., Whetton A.D. Blood 2004, 103:3624-3634.
12. Gygi S.P., Corthals G.L., Zhang Y., Rochon Y., Aebersold R. Proc Natl Acad Sci U S A 2000, 97:9390-9395.
13. Petrak J., Ivanek R., Toman O., Cmejla R., Cmejlova J., Vyoral D., et al. Proteomics 2008, 8:1744-1749.
14. Gorg A., Obermaier C., Boguth G., Harder A., Scheibe B., Wildgruber R., et al. Electrophoresis 2000, 21:1037-1053.
15. Antonucci F., Chilosi M., Parolini C., Hamdan M., Astner H., Righetti P.G. Electrophoresis 2003, 24:2376-2385.
16. Rubin C.I., Atweh G.F. J Cell Biochem 2004, 93:242-250.
17. Hanash S.M., Strahler J.R., Kuick R., Chu E.H., Nichols D. J Biol Chem 1988, 263:12813-12815.
18. Poirier F., Pontet M., Labas V., le Caer J.P., Sghiouar-Imam N., Raphael M., et al. Electrophoresis 2001, 22:1867-1877.
19. Fujii K., Kondo T., Yamada M., Iwatsuki K., Hirohashi S. Proteomics 2006, 6:4856-4876.
20. Rana S., Maples P.B., Senzer N., Nemunaitis J. Expert Rev Anticancer Ther 2008, 8:1461-1470.
21. Klein U., Tu Y., Stolovitzky G.A., Mattioli M., Cattoretti G., Husson H., et al. J Exp Med 2001, 194:1625-1638.
22. Boyd R.S., Dyer M.J., Cain K. Proteomic analysis of cell surface membrane proteins in leukemic cells. Adhesion Protein Protocols 2006, Human PressInc, Totowa. A.S. Coutts (Ed.).
23. Lu B., McClatchy D.B., Kim J.Y., Yates J.R. Proteomics 2008, 8:3947-3955.
24. Unwin R.D., Evans C.A., Whetton A.D. Trends Biochem Sci 2006, 31:473-484.
25. Vogler M., Butterworth M., Majid A., Walewska R.J., Sun X.M., Dyer M.J., et al. Blood 2009, 113:4403-4413.
26. Pierce A., Unwin R.D., Evans C.A., Griffiths S., Carney L., Zhang L., et al. Mol Cell Proteomics 2008, 7:853-863.
27. Barnidge D.R., Tschumper R.C., Jelinek D.F., Muddiman D.C., Kay N.E. J Chromatogr B Analyt Technol Biomed Life Sci 2005, 819:33-39.
28. Ishihama Y., Oda Y., Tabata T., Sato T., Nagasu T., Rappsilber J., et al. Mol Cell Proteomics 2005, 4:1265-1272.
29. Paoletti A.C., Parmely T.J., Tomomori-Sato C., Sato S., Zhu D., Conaway R.C., et al. Proc Natl Acad Sci U S A 2006, 103:18928-18933.
30. Vogel C., Marcotte E.M. Nat Protoc 2008, 3:1444-1451.
31. Malmstrom J., Beck M., Schmidt A., Lange V., Deutsch E.W., Aebersold R. Nature 2009, 460:762-765.
32. Pagliarini D.J., Calvo S.E., Chang B., Sheth S.A., Vafai S.B., Ong S.E., et al. Cell 2008, 134:112-123.
33. Poirier F., Joubert-Caron R., Labas V., Caron M. Proteomics 2003, 3:1028-1036.
34. Gundry R.L., Boheler K.R., Van Eyk J.E., Wollscheid B. Proteomics Clin Appl 2008, 2:892-903.
35. McKeel D.W., Jarett L. J Cell Biol 1970, 44:417-432.
36. Boyd R.S., Adam P.J., Patel S., Loader J.A., Berry J., Redpath N.T., et al. Leukemia 2003, 17:1605-1612.
37. Miguet L., Bechade G., Fornecker L., Zink E., Felden C., Gervais C., et al. J Proteome Res 2009, 8:3346-3354.
38. de la Fuente-Garcia M.A., Nicolas J.M., Freed J.H., Palou E., Thomas A.P., Vilella R., et al. Blood 1998, 91:2800-2809.
39. Simons K., Toomre D. Nat Rev Mol Cell Biol 2000, 1:31-39.
40. Shaw A.S. Nat Immunol 2006, 7:1139-1142.
41. Garner A.E., Smith D.A., Hooper N.M. Biophys J 2008, 94:1326-1340.
42. Lichtenberg D., Goni F.M., Heerklotz H. Trends Biochem Sci 2005, 30:430-436.
43. Foster L.J. Expert Rev Proteomics 2008, 5:541-543.
44. Foster L.J., De Hoog C.L., Mann M. Proc Natl Acad Sci U S A 2003, 100:5813-5818.
45. Pierce S.K. Nat Rev Immunol 2002, 2:96-105.
46. Gupta N., Wollscheid B., Watts J.D., Scheer B., Aebersold R., DeFranco A.L. Nat Immunol 2006, 7:625-633.
47. Mielenz D., Vettermann C., Hampel M., Lang C., Avramidou A., Karas M., et al. J Immunol 2005, 174:3508-3517.
48. Avramidou A., Kroczek C., Lang C., Schuh W., Jack H.M., Mielenz D. Cell Death Differ 2007, 14:1936-1947.
49. Saeki K., Miura Y., Aki D., Kurosaki T., Yoshimura A. EMBO J 2003, 22:3015-3026.
50. Saeki K., Fukuyama S., Ayada T., Nakaya M., Aki D., Takaesu G., et al. J Immunol 2009, 182:5929-5937.
51. Lee S.J., Kim K.H., Park J.S., Jung J.W., Kim Y.H., Kim S.K., et al. Biochem Biophys Res Commun 2007, 357:620-626.
52. Peirce M.J., Wait R., Begum S., Saklatvala J., Cope A.P. Mol Cell Proteomics 2004, 3:56-65.
53. Trinkle-Mulcahy L., Boulon S., Lam Y.W., Urcia R., Boisvert F.M., Vandermoere F., et al. J Cell Biol 2008, 183:223-239.
54. Nicholson I.C., Ayhan M., Hoogenraad N.J., Zola H. J Leukoc Biol 2005, 77:190-198.
55. Ahram M., Litou Z.I., Fang R., Al-Tawallbeh G. In Silico Biol 2006, 6:379-386.
56. Wollscheid B., Bausch-Fluck D., Henderson C., O'Brien R., Bibel M., Schiess R., et al. Nat Biotechnol 2009, 27:378-386.
57. Burger J.A., Gandhi V. Blood 2009, 114:2560-2561.
58. Burger J.A., Ghia P., Rosenwald A., Caligaris-Cappio F. Blood 2009, 114:3367-3375.
59. MacFarlane M. Xenobiotica 2009, 39:616-624.
60. Ashkenazi A. Nat Rev Drug Discov 2008, 7:1001-1012.
61. Wang S. Oncogene 2008, 27:6207-6215.
62. Inoue S., MacFarlane M., Harper N., Wheat L.M., Dyer M.J., Cohen G.M. Cell Death Differ 2004, 11(Suppl 2):S193-S206.
63. Fulda S. Curr Cancer Drug Targets 2008, 8:132-140.
64. Tanaka H., Hoshikawa Y., Oh-hara T., Koike S., Naito M., Noda T., et al. Mol Cancer Res 2009, 7:557-569.
65. Pal S., Baiocchi R.A., Byrd J.C., Grever M.R., Jacob S.T., Sif S. EMBO J 2007, 26:3558-3569.
66. Jin Z., Li Y., Pitti R., Lawrence D., Pham V.C., Lill J.R., et al. Cell 2009, 137:721-735.
67. Mackay F., Tangye S.G. Curr Opin Pharmacol 2004, 4:347-354.
68. Kern C., Cornuel J.F., Billard C., Tang R., Rouillard D., Stenou V., et al. Blood 2004, 103:679-688.
69. Novak A.J., Bram R.J., Kay N.E., Jelinek D.F. Blood 2002, 100:2973-2979.
70. Mackay F., Schneider P. Nat Rev Immunol 2009, 9:491-502.
71. Khan W.N. J Immunol 2009, 183:3561-3567.
72. DeCoursey T.E., Morgan D., Cherny V.V. Nature 2003, 422:531-534.
73. Capasso M., Bhamrah M., Boyd R.S., Cain K., Pulford K., Musset B., et al. Blood 2008, 112.
74. Chen L., Monti S., Juszczynski P., Daley J., Chen W., Witzig T.E., et al. Blood 2008, 111:2230-2237.
75. Rinaldi A., Kwee I., Taborelli M., Largo C., Uccella S., Martin V., et al. Br J Haematol 2006, 132:303-316.
76. Zhang J., Yang P.L., Gray N.S. Nat Rev Cancer 2009, 9:28-39.
77. Witze E.S., Old W.M., Resing K.A., Ahn N.G. Nat Methods 2007, 4:798-806.
78. Thingholm T.E., Jensen O.N., Larsen M.R. Proteomics 2009, 9:1451-1468.
79. Walters D.K., Goss V.L., Stoffregen E.P., Gu T.L., Lee K., Nardone J., et al. Leuk Res 2006, 30:1097-1104.
80. Goss V.L., Lee K.A., Moritz A., Nardone J., Spek E.J., Macneill J., et al. Blood 2006, 107:4888-4897.
81. Brehme M., Hantschel O., Colinge J., Kaupe I., Planyavsky M., Kocher T., et al. Proc Natl Acad Sci U S A 2009, 106:7414-7419.
82. Cecconi D., Zamo A., Bianchi E., Parisi A., Barbi S., Milli A., et al. Proteomics 2008, 8:4495-4506.
83. O'Hayre M., Salanga C.L., Dorrestein P.C., Handel T.M. Methods Enzymol 2009, 460:331-346.
84. Piggee C. Anal Chem 2009, 81:2418-2420.
85. Ghobrial I.M., McCormick D.J., Kaufmann S.H., Leontovich A.A., Loegering D.A., Dai N.T., et al. Blood 2005, 105:3722-3730.
86. Miguet L., Bogumil R., Decloquement P., Herbrecht R., Potier N., Mauvieux L., et al. J Proteome Res 2006, 5:2258-2269.
87. Zhang X., Wang B., Zhang X.S., Li Z.M., Guan Z.Z., Jiang W.Q. Bmc Cancer 2007, 7.