-
1
-
-
0020170342
-
-
PNASA6 0027-8424,. 10.1073/pnas.79.16.4967
-
H. Hartmann, F. Parak, W. Steigemann, G. A. Petsko, D. R. Ponzi, and H. Frauenfelder, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 79, 4967 (1982). 10.1073/pnas.79.16.4967
-
(1982)
Proc. Natl. Acad. Sci. U.S.A.
, vol.79
, pp. 4967
-
-
Hartmann, H.1
Parak, F.2
Steigemann, W.3
Petsko, G.A.4
Ponzi, D.R.5
Frauenfelder, H.6
-
2
-
-
0024976853
-
-
NATUAS 0028-0836,. 10.1038/337754a0
-
W. Doster, S. Cusack, and W. Petry, Nature (London) NATUAS 0028-0836 337, 754 (1989). 10.1038/337754a0
-
(1989)
Nature (London)
, vol.337
, pp. 754
-
-
Doster, W.1
Cusack, S.2
Petry, W.3
-
3
-
-
0026720247
-
-
NATUAS 0028-0836,. 10.1038/357423a0
-
B. F. Rasmussen, A. M. Stock, D. Ringe, and G. A. Petsko, Nature (London) NATUAS 0028-0836 357, 423 (1992). 10.1038/357423a0
-
(1992)
Nature (London)
, vol.357
, pp. 423
-
-
Rasmussen, B.F.1
Stock, A.M.2
Ringe, D.3
Petsko, G.A.4
-
4
-
-
30844441193
-
-
JACSAT 0002-7863,. 10.1021/ja056444i
-
G. Caliskan, R. M. Briber, D. Thirumalai, V. Garcia-Sakai, S. A. Woodson, and A. P. Sokolov, J. Am. Chem. Soc. JACSAT 0002-7863 128, 32 (2006). 10.1021/ja056444i
-
(2006)
J. Am. Chem. Soc.
, vol.128
, pp. 32
-
-
Caliskan, G.1
Briber, R.M.2
Thirumalai, D.3
Garcia-Sakai, V.4
Woodson, S.A.5
Sokolov, A.P.6
-
6
-
-
0030628825
-
-
ARPLAP 0066-426X,. 10.1146/annurev.physchem.48.1.545
-
J. N. Onuchic, Z. L. Schulten, and P. G. Wolynes, Annu. Rev. Phys. Chem. ARPLAP 0066-426X 48, 545 (1997). 10.1146/annurev.physchem.48.1.545
-
(1997)
Annu. Rev. Phys. Chem.
, vol.48
, pp. 545
-
-
Onuchic, J.N.1
Schulten, Z.L.2
Wolynes, P.G.3
-
8
-
-
0346216028
-
-
PRLTAO 0031-9007,. 10.1103/PhysRevLett.91.208106
-
A. L. Tournier and J. C. Smith, Phys. Rev. Lett. PRLTAO 0031-9007 91, 208106 (2003). 10.1103/PhysRevLett.91.208106
-
(2003)
Phys. Rev. Lett.
, vol.91
, pp. 208106
-
-
Tournier, A.L.1
Smith, J.C.2
-
9
-
-
0026636807
-
-
SCIEAS 0036-8075,. 10.1126/science.1615323
-
A. Ansari, C. M. Jones, E. R. Henry, J. Hofrichter, and W. A. Eaton, Science SCIEAS 0036-8075 256, 1796 (1992). 10.1126/science.1615323
-
(1992)
Science
, vol.256
, pp. 1796
-
-
Ansari, A.1
Jones, C.M.2
Henry, E.R.3
Hofrichter, J.4
Eaton, W.A.5
-
10
-
-
0033988125
-
-
NSBIEW 1072-8368,. 10.1038/71231
-
D. Vitkup, D. Ringe, G. A. Petsko, and M. Karplus, Nat. Struct. Biol. NSBIEW 1072-8368 7, 34 (2000). 10.1038/71231
-
(2000)
Nat. Struct. Biol.
, vol.7
, pp. 34
-
-
Vitkup, D.1
Ringe, D.2
Petsko, G.A.3
Karplus, M.4
-
11
-
-
0034743152
-
-
ARPLAP 0066-426X,. 10.1146/annurev.physchem.52.1.315
-
M. D. Fayer, Annu. Rev. Phys. Chem. ARPLAP 0066-426X 52, 315 (2001). 10.1146/annurev.physchem.52.1.315
-
(2001)
Annu. Rev. Phys. Chem.
, vol.52
, pp. 315
-
-
Fayer, M.D.1
-
12
-
-
0037058913
-
-
PNASA6 0027-8424,. 10.1073/pnas.212637899
-
P. W. Fenimore, H. Frauenfelder, B. H. McMahon, and F. G. Parak, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 99, 16047 (2002). 10.1073/pnas. 212637899
-
(2002)
Proc. Natl. Acad. Sci. U.S.A.
, vol.99
, pp. 16047
-
-
Fenimore, P.W.1
Frauenfelder, H.2
McMahon, B.H.3
Parak, F.G.4
-
13
-
-
19044399611
-
-
PRLTAO 0031-9007,. 10.1103/PhysRevLett.88.138101
-
M. Tarek and D. J. Tobias, Phys. Rev. Lett. PRLTAO 0031-9007 88, 138101 (2002). 10.1103/PhysRevLett.88.138101
-
(2002)
Phys. Rev. Lett.
, vol.88
, pp. 138101
-
-
Tarek, M.1
Tobias, D.J.2
-
14
-
-
0344080468
-
-
JPCBFK 1089-5647,. 10.1021/jp027823q
-
K. Moritsugu, O. Miyashita, and A. Kidera, J. Phys. Chem. B JPCBFK 1089-5647 107, 3309 (2003). 10.1021/jp027823q
-
(2003)
J. Phys. Chem. B
, vol.107
, pp. 3309
-
-
Moritsugu, K.1
Miyashita, O.2
Kidera, A.3
-
15
-
-
33645675983
-
-
JPCBFK 1089-5647,. 10.1021/jp055314t
-
K. Moritsugu and J. C. Smith, J. Phys. Chem. B JPCBFK 1089-5647 110, 5807 (2006). 10.1021/jp055314t
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 5807
-
-
Moritsugu, K.1
Smith, J.C.2
-
16
-
-
65249122552
-
-
PNASA6 0027-8424,. 10.1073/pnas.0900336106
-
H. Frauenfelder, G. Chen, J. Berendzen, P. W. Fenimore, H. Jansson, B. H. McMahon, I. R. Stroe, J. Swenson, and R. D. Young, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 106, 5129 (2009). 10.1073/pnas.0900336106
-
(2009)
Proc. Natl. Acad. Sci. U.S.A.
, vol.106
, pp. 5129
-
-
Frauenfelder, H.1
Chen, G.2
Berendzen, J.3
Fenimore, P.W.4
Jansson, H.5
McMahon, B.H.6
Stroe, I.R.7
Swenson, J.8
Young, R.D.9
-
17
-
-
33750430306
-
-
PRLTAO 0031-9007,. 10.1103/PhysRevLett.97.177802
-
P. Kumar, Z. Yan, L. Xu, M. G. Mazza, S. V. Buldyrev, S. -H. Chen, S. Sastry, and H. E. Stanley, Phys. Rev. Lett. PRLTAO 0031-9007 97, 177802 (2006). 10.1103/PhysRevLett.97.177802
-
(2006)
Phys. Rev. Lett.
, vol.97
, pp. 177802
-
-
Kumar, P.1
Yan, Z.2
Xu, L.3
Mazza, M.G.4
Buldyrev, S.V.5
Chen, S.-H.6
Sastry, S.7
Stanley, H.E.8
-
18
-
-
55149098521
-
-
PRLTAO 0031-9007,. 10.1103/PhysRevLett.101.178103
-
Y. He, P. I. Ku, J. R. Knab, J. Y. Chen, and A. G. Markelz, Phys. Rev. Lett. PRLTAO 0031-9007 101, 178103 (2008). 10.1103/PhysRevLett.101.178103
-
(2008)
Phys. Rev. Lett.
, vol.101
, pp. 178103
-
-
He, Y.1
Ku, P.I.2
Knab, J.R.3
Chen, J.Y.4
Markelz, A.G.5
-
19
-
-
57949092562
-
-
JPCBFK 1089-5647,. 10.1021/jp806403p
-
E. Backus, P. H. Nguyen, V. Botan, R. Pfister, A. Moretto, M. Crisma, C. Toniolo, G. Stock, and P. Hamm, J. Phys. Chem. B JPCBFK 1089-5647 112, 15487 (2008). 10.1021/jp806403p
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 15487
-
-
Backus, E.1
Nguyen, P.H.2
Botan, V.3
Pfister, R.4
Moretto, A.5
Crisma, M.6
Toniolo, C.7
Stock, G.8
Hamm, P.9
-
20
-
-
70349665348
-
-
JPCBFK 1089-5647,. 10.1021/jp904905d
-
E. H. G. Backus, R. Bloem, R. Pfister, A. Moretto, M. Crisma, C. Toniolo, and P. Hamm, J. Phys. Chem. B JPCBFK 1089-5647 113, 13405 (2009). 10.1021/jp904905d
-
(2009)
J. Phys. Chem. B
, vol.113
, pp. 13405
-
-
Backus, E.H.G.1
Bloem, R.2
Pfister, R.3
Moretto, A.4
Crisma, M.5
Toniolo, C.6
Hamm, P.7
-
21
-
-
34547896625
-
-
PNASA6 0027-8424,. 10.1073/pnas.0701762104
-
V. Botan, E. Backus, R. Pfister, A. Moretto, M. Crisma, C. Toniolo, P. H. Nguyen, G. Stock, and P. Hamm, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 104, 12749 (2007). 10.1073/pnas.0701762104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 12749
-
-
Botan, V.1
Backus, E.2
Pfister, R.3
Moretto, A.4
Crisma, M.5
Toniolo, C.6
Nguyen, P.H.7
Stock, G.8
Hamm, P.9
-
22
-
-
49349092459
-
-
JPCBFK 1089-5647,. 10.1021/jp711046e
-
E. Backus, P. H. Nguyen, V. Botan, R. Pfister, A. Moretto, M. Crisma, C. Toniolo, G. Stock, and P. Hamm, J. Phys. Chem. B JPCBFK 1089-5647 112, 9091 (2008). 10.1021/jp711046e
-
(2008)
J. Phys. Chem. B
, vol.112
, pp. 9091
-
-
Backus, E.1
Nguyen, P.H.2
Botan, V.3
Pfister, R.4
Moretto, A.5
Crisma, M.6
Toniolo, C.7
Stock, G.8
Hamm, P.9
-
23
-
-
74549171547
-
-
JCPSA6 0021-9606,. 10.1063/1.3284742
-
P. H. Nguyen, S. M. Park, and G. Stock, J. Chem. Phys. JCPSA6 0021-9606 132, 025102 (2010). 10.1063/1.3284742
-
(2010)
J. Chem. Phys.
, vol.132
, pp. 025102
-
-
Nguyen, P.H.1
Park, S.M.2
Stock, G.3
-
24
-
-
27344454932
-
-
JCCHDD 0192-8651,. 10.1002/jcc.20291
-
D. van der Spoel, E. Lindahl, B. Hess, G. Groenhof, A. E. Mark, and H. J. C. Berendsen, J. Comput. Chem. JCCHDD 0192-8651 26, 1701 (2005). 10.1002/jcc.20291
-
(2005)
J. Comput. Chem.
, vol.26
, pp. 1701
-
-
Van Der Spoel, D.1
Lindahl, E.2
Hess, B.3
Groenhof, G.4
Mark, A.E.5
Berendsen, H.J.C.6
-
25
-
-
0003544049
-
-
(Vdf Hochschulverlag AG an der ETH Zürich, Zürich)
-
W. F. van Gunsteren, S. R. Billeter, A. A. Eising, P. H. Hünenberger, P. Krüger, A. E. Mark, W. R. P. Scott, and I. G. Tironi, Biomolecular Simulation: The GROMOS96 Manual and User Guide (Vdf Hochschulverlag AG an der ETH Zürich, Zürich, 1996).
-
(1996)
Biomolecular Simulation: The GROMOS96 Manual and User Guide
-
-
Van Gunsteren, W.F.1
Billeter, S.R.2
Eising, A.A.3
Hünenberger, P.H.4
Krüger, P.5
Mark, A.E.6
Scott, W.R.P.7
Tironi, I.G.8
-
26
-
-
84946655114
-
-
MOPHAM 0026-8976,. 10.1080/00268979400101331
-
I. G. Tironi and W. F. van Gunsteren, Mol. Phys. MOPHAM 0026-8976 83, 381 (1994). 10.1080/00268979400101331
-
(1994)
Mol. Phys.
, vol.83
, pp. 381
-
-
Tironi, I.G.1
Van Gunsteren, W.F.2
-
27
-
-
33846823909
-
-
JCPSA6 0021-9606,. 10.1063/1.464397
-
T. Darden, D. York, and L. Petersen, J. Chem. Phys. JCPSA6 0021-9606 98, 10089 (1993). 10.1063/1.464397
-
(1993)
J. Chem. Phys.
, vol.98
, pp. 10089
-
-
Darden, T.1
York, D.2
Petersen, L.3
-
28
-
-
33646940952
-
-
JCTPAH 0021-9991,. 10.1016/0021-9991(77)90098-5
-
J. P. Ryckaert, G. Ciccotti, and H. J. C. Berendsen, J. Comput. Phys. JCTPAH 0021-9991 23, 327 (1977). 10.1016/0021-9991(77)90098-5
-
(1977)
J. Comput. Phys.
, vol.23
, pp. 327
-
-
Ryckaert, J.P.1
Ciccotti, G.2
Berendsen, H.J.C.3
-
29
-
-
33750587438
-
-
JCPSA6 0021-9606,. 10.1063/1.448118
-
H. J. C. Berendsen, J. P. M. Postma, W. F. van Gunsteren, A. Dinola, and J. R. Haak, J. Chem. Phys. JCPSA6 0021-9606 81, 3684 (1984). 10.1063/1.448118
-
(1984)
J. Chem. Phys.
, vol.81
, pp. 3684
-
-
Berendsen, H.J.C.1
Postma, J.P.M.2
Van Gunsteren, W.F.3
Dinola, A.4
Haak, J.R.5
-
30
-
-
43249098170
-
-
CMPHC2 0301-0104,. 10.1016/j.chemphys.2007.10.034
-
M. Kobus, R. D. Gorbunov, P. H. Nguyen, and G. Stock, Chem. Phys. CMPHC2 0301-0104 347, 208 (2008). 10.1016/j.chemphys.2007.10.034
-
(2008)
Chem. Phys.
, vol.347
, pp. 208
-
-
Kobus, M.1
Gorbunov, R.D.2
Nguyen, P.H.3
Stock, G.4
-
31
-
-
2442440650
-
-
JCPSA6 0021-9606,. 10.1063/1.1683072
-
S. A. Corcelli, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. JCPSA6 0021-9606 120, 8107 (2004). 10.1063/1.1683072
-
(2004)
J. Chem. Phys.
, vol.120
, pp. 8107
-
-
Corcelli, S.A.1
Lawrence, C.P.2
Skinner, J.L.3
-
32
-
-
30544437694
-
-
JPCBFK 1089-5647,. 10.1021/jp054107q
-
P. Bou and T. A. Keiderling, J. Phys. Chem. B JPCBFK 1089-5647 109, 23687 (2005). 10.1021/jp054107q
-
(2005)
J. Phys. Chem. B
, vol.109
, pp. 23687
-
-
Bou, P.1
Keiderling, T.A.2
-
33
-
-
34547926118
-
-
JCPSA6 0021-9606,. 10.1063/1.2200690
-
S. Li, J. R. Schmidt, S. A. Corcelli, C. P. Lawrence, and J. L. Skinner, J. Chem. Phys. JCPSA6 0021-9606 124, 204110 (2006). 10.1063/1.2200690
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 204110
-
-
Li, S.1
Schmidt, J.R.2
Corcelli, S.A.3
Lawrence, C.P.4
Skinner, J.L.5
-
34
-
-
33644914712
-
-
JPCBFK 1089-5647,. 10.1021/jp055813u
-
W. Zhuang, D. Abramavicius, T. Hayashi, and S. Mukamel, J. Phys. Chem. B JPCBFK 1089-5647 110, 3362 (2006). 10.1021/jp055813u
-
(2006)
J. Phys. Chem. B
, vol.110
, pp. 3362
-
-
Zhuang, W.1
Abramavicius, D.2
Hayashi, T.3
Mukamel, S.4
-
35
-
-
33746813977
-
-
JCPSA6 0021-9606,. 10.1063/1.2218516
-
T. la Cour Jansen, A. G. Dijkstra, T. M. Watson, J. D. Hirst, and J. Knoester, J. Chem. Phys. JCPSA6 0021-9606 125, 044312 (2006). 10.1063/1.2218516
-
(2006)
J. Chem. Phys.
, vol.125
, pp. 044312
-
-
La Cour Jansen, T.1
Dijkstra, A.G.2
Watson, T.M.3
Hirst, J.D.4
Knoester, J.5
-
36
-
-
33947198253
-
-
CHPLBC 0009-2614,. 10.1016/j.cplett.2007.02.033
-
R. D. Gorbunov and G. Stock, Chem. Phys. Lett. CHPLBC 0009-2614 437, 272 (2007). 10.1016/j.cplett.2007.02.033
-
(2007)
Chem. Phys. Lett.
, vol.437
, pp. 272
-
-
Gorbunov, R.D.1
Stock, G.2
-
37
-
-
34548087522
-
-
JCPSA6 0021-9606,. 10.1063/1.1898215
-
R. D. Gorbunov, D. S. Kosov, and G. Stock, J. Chem. Phys. JCPSA6 0021-9606 122, 224904 (2005). 10.1063/1.1898215
-
(2005)
J. Chem. Phys.
, vol.122
, pp. 224904
-
-
Gorbunov, R.D.1
Kosov, D.S.2
Stock, G.3
-
38
-
-
31544436644
-
-
JCPSA6 0021-9606,. 10.1063/1.2148409
-
T. la Cour Jansen and J. Knoester, J. Chem. Phys. JCPSA6 0021-9606 124, 044502 (2006). 10.1063/1.2148409
-
(2006)
J. Chem. Phys.
, vol.124
, pp. 044502
-
-
La Cour Jansen, T.1
Knoester, J.2
-
39
-
-
84949218859
-
-
ADCPAA 0065-2385,. 10.1002/9780470143605.ch6
-
R. Kubo, Adv. Chem. Phys. ADCPAA 0065-2385 15, 101 (1969). 10.1002/9780470143605.ch6
-
(1969)
Adv. Chem. Phys.
, vol.15
, pp. 101
-
-
Kubo, R.1
-
41
-
-
33847273841
-
-
JUPSAU 0031-9015,. 10.1143/JPSJ.75.082001
-
Y. Tanimura, J. Phys. Soc. Jpn. JUPSAU 0031-9015 75, 082001 (2006). 10.1143/JPSJ.75.082001
-
(2006)
J. Phys. Soc. Jpn.
, vol.75
, pp. 082001
-
-
Tanimura, Y.1
-
43
-
-
0000091422
-
-
JPCAFH 1089-5639,. 10.1021/jp993207r
-
A. Tokmakoff, J. Phys. Chem. A JPCAFH 1089-5639 104, 4247 (2000). 10.1021/jp993207r
-
(2000)
J. Phys. Chem. A
, vol.104
, pp. 4247
-
-
Tokmakoff, A.1
-
44
-
-
0001326710
-
-
JPCBFK 1089-5647,. 10.1021/jp9813286
-
P. Hamm, M. Lim, and R. M. Hochstrasser, J. Phys. Chem. B JPCBFK 1089-5647 102, 6123 (1998). 10.1021/jp9813286
-
(1998)
J. Phys. Chem. B
, vol.102
, pp. 6123
-
-
Hamm, P.1
Lim, M.2
Hochstrasser, R.M.3
-
45
-
-
1842298212
-
-
NSBIEW 1072-8368,. 10.1038/nsb0197-10
-
K. A. Dill and H. S. Chan, Nat. Struct. Biol. NSBIEW 1072-8368 4, 10 (1997). 10.1038/nsb0197-10
-
(1997)
Nat. Struct. Biol.
, vol.4
, pp. 10
-
-
Dill, K.A.1
Chan, H.S.2
-
46
-
-
0036535895
-
-
COSBEF 0959-440X,. 10.1016/S0959-440X(02)00304-4
-
M. Gruebele, Curr. Opin. Struct. Biol. COSBEF 0959-440X 12, 161 (2002). 10.1016/S0959-440X(02)00304-4
-
(2002)
Curr. Opin. Struct. Biol.
, vol.12
, pp. 161
-
-
Gruebele, M.1
-
47
-
-
0042797442
-
-
(Cambridge University Press, Cambridge)
-
D. J. Wales, Energy Landscapes (Cambridge University Press, Cambridge, 2003).
-
(2003)
Energy Landscapes
-
-
Wales, D.J.1
-
48
-
-
33846917109
-
-
PNASA6 0027-8424,. 10.1073/pnas.0608099104
-
G. Gfeller, P. De Los Rios, A. Caflisch, and F. Rao, Proc. Natl. Acad. Sci. U.S.A. PNASA6 0027-8424 104, 1817 (2007). 10.1073/pnas.0608099104
-
(2007)
Proc. Natl. Acad. Sci. U.S.A.
, vol.104
, pp. 1817
-
-
Gfeller, G.1
De Los Rios, P.2
Caflisch, A.3
Rao, F.4
-
49
-
-
77956240861
-
-
It should be noted, however, that for improved sampling (e.g., by starting at left- and right-handed conformations), we should also obtain at 220 K a φ -symmetric form of the free energy landscape. Hence, the rise of the fluctuations along φ in Fig. is to some extent a sampling artifact, which disappears when we average over both chiralities as done in Fig.
-
It should be noted, however, that for improved sampling (e.g., by starting at left- and right-handed conformations), we should also obtain at 220 K a φ -symmetric form of the free energy landscape. Hence, the rise of the fluctuations along φ in Fig. is to some extent a sampling artifact, which disappears when we average over both chiralities as done in Fig..
-
-
-
-
50
-
-
0000171168
-
-
JCPSA6 0021-9606,. 10.1063/1.473392
-
P. Hamm, S. M. Ohline, and W. Zinth, J. Chem. Phys. JCPSA6 0021-9606 106, 519 (1997). 10.1063/1.473392
-
(1997)
J. Chem. Phys.
, vol.106
, pp. 519
-
-
Hamm, P.1
Ohline, S.M.2
Zinth, W.3
|