-
3
-
-
18344396568
-
Minimum information about a microarray experiment (MIAME)-toward standards for microarray data
-
Brazma A, Hingamp P, Quackenbush J, Sherlock G, Spellman P, Stoeckert C, Aach J, Ansorge W, Ball C, Causton H, Gaasterland T, Glenisson P, Holstege F, Kim I, Markowitz V, Matese J, Parkinson H, Robinson A, Sarkans U, Schulze-Kremer S et al (2001) Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29: 365-371
-
(2001)
Nat Genet
, vol.29
, pp. 365-371
-
-
Brazma, A.1
Hingamp, P.2
Quackenbush, J.3
Sherlock, G.4
Spellman, P.5
Stoeckert, C.6
Aach, J.7
Ansorge, W.8
Ball, C.9
Causton, H.10
Gaasterland, T.11
Glenisson, P.12
Holstege, F.13
Kim, I.14
Markowitz, V.15
Matese, J.16
Parkinson, H.17
Robinson, A.18
Sarkans, U.19
Schulze-Kremer, S.20
more..
-
4
-
-
58549105074
-
The NIFSTD and BIRNLex vocabularies: Building comprehensive ontologies for neuroscience
-
Bug WJ, Ascoli GA, Grethe JS, Gupta A, Fennema-Notestine C, Laird AR, Larson SD, Rubin D, Shepherd GM, Turner JA, Martone ME (2008) The NIFSTD and BIRNLex vocabularies: building comprehensive ontologies for neuroscience. Neuroinformatics 6: 175-194
-
(2008)
Neuroinformatics
, vol.6
, pp. 175-194
-
-
Bug, W.J.1
Ascoli, G.A.2
Grethe, J.S.3
Gupta, A.4
Fennema-Notestine, C.5
Laird, A.R.6
Larson, S.D.7
Rubin, D.8
Shepherd, G.M.9
Turner, J.A.10
Martone, M.E.11
-
6
-
-
54949138406
-
Vispedia: Interactive visual exploration of Wikipedia data via search-based integration
-
Chan B,Wu L, Talbot J, Cammarando M, Hanrahan P (2008) Vispedia: interactive visual exploration of Wikipedia data via search-based integration. IEEE Trans Comput Graph 14: 1213-1220
-
(2008)
IEEE Trans Comput Graph
, vol.14
, pp. 1213-1220
-
-
Chan Bwu, L.1
Talbot, J.2
Cammarando, M.3
Hanrahan, P.4
-
7
-
-
13344278672
-
Content-rich biological network constructed by mining PubMed abstracts
-
Chen H, Sharp B (2004) Content-rich biological network constructed by mining PubMed abstracts. BMC Bioinformatics 5: 147
-
(2004)
BMC Bioinformatics
, vol.5
, pp. 147
-
-
Chen, H.1
Sharp, B.2
-
8
-
-
33745835457
-
A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images
-
Chen S-C, Murphy R (2009) A graphical model approach to automated classification of protein subcellular location patterns in multi-cell images. BMC Bioinformatics 7: 90
-
(2009)
BMC Bioinformatics
, vol.7
, pp. 90
-
-
Chen, S.-C.1
Murphy, R.2
-
9
-
-
52949095016
-
The SWAN biomedical discourse ontology
-
Ciccarese P,Wu E,Wong G, Ocana M, Kinoshita J, Ruttenberg A, Clark T (2008) The SWAN biomedical discourse ontology. J Biomed Inform 41: 739-751
-
(2008)
J Biomed Inform
, vol.41
, pp. 739-751
-
-
Ciccarese, P.1
Ewong, G.2
Ocana, M.3
Kinoshita, J.4
Ruttenberg, A.5
Clark, T.6
-
10
-
-
34548636072
-
PDZ protein interactions underlying NMDA receptor-mediated excitotoxicity and neuroprotection by PSD-95 inhibitors
-
Cui H, Hayashi A, Sun H-S, Belmares M, Cobey C, Phan T, Schweizer J, Salter M, Wang Y, Tasker R, Garman D, Rabinowitz J, Lu P, Tymianski M (2007) PDZ protein interactions underlying NMDA receptor-mediated excitotoxicity and neuroprotection by PSD-95 inhibitors. J Neurosci 27: 9901-9915
-
(2007)
J Neurosci
, vol.27
, pp. 9901-9915
-
-
Cui, H.1
Hayashi, A.2
Sun, H.-S.3
Belmares, M.4
Cobey, C.5
Phan, T.6
Schweizer, J.7
Salter, M.8
Wang, Y.9
Tasker, R.10
Garman, D.11
Rabinowitz, J.12
Lu, P.13
Tymianski, M.14
-
11
-
-
33846328354
-
The database revolution
-
Editorial
-
Editorial (2007) The database revolution. Nature 445: 229-230
-
(2007)
Nature
, vol.445
, pp. 229-230
-
-
-
12
-
-
38049153158
-
The Semantic Web in action
-
Feigenbaum L, Herman I, Hongsermeier T, Neumann E, Stephens S (2007) The Semantic Web in action. Sci Am 297: 64-71
-
(2007)
Sci Am
, vol.297
, pp. 64-71
-
-
Feigenbaum, L.1
Herman, I.2
Hongsermeier, T.3
Neumann, E.4
Stephens, S.5
-
14
-
-
34248596804
-
Structured digital abstract makes text mining easy
-
Gerstein M, Seringhaus M, Fields S (2007) Structured digital abstract makes text mining easy. Nature 447: 142
-
(2007)
Nature
, vol.447
, pp. 142
-
-
Gerstein, M.1
Seringhaus, M.2
Fields, S.3
-
16
-
-
33846641257
-
IHOPerator: Userscripting a personalized bioinformaticsWeb, starting with the iHOP website
-
Good B, Kawas E, Kuo B, Wilkinson M (2006) iHOPerator: userscripting a personalized bioinformaticsWeb, starting with the iHOP website. Curr Protoc Bioinformatics 7: 534
-
(2006)
Curr Protoc Bioinformatics
, vol.7
, pp. 534
-
-
Good, B.1
Kawas, E.2
Kuo, B.3
Wilkinson, M.4
-
17
-
-
0030951615
-
The yeast gene, MDM20, is necessary for mitochondrial inheritance and organization of the actin cytoskeleton
-
Hermann G, King E, Shaw J (1997) The yeast gene, MDM20, is necessary for mitochondrial inheritance and organization of the actin cytoskeleton. J Cell Biol 137: 141-153
-
(1997)
J Cell Biol
, vol.137
, pp. 141-153
-
-
Hermann, G.1
King, E.2
Shaw, J.3
-
18
-
-
33749234216
-
Drugs, their targets and the nature and number of drug targets
-
Imming P, Sinning C, Meyer A (2006) Drugs, their targets and the nature and number of drug targets. Nat Rev Drug Discov 5: 821-834
-
(2006)
Nat Rev Drug Discov
, vol.5
, pp. 821-834
-
-
Imming, P.1
Sinning, C.2
Meyer, A.3
-
19
-
-
31144432293
-
Literature mining for the biologist: From information retrieval to biological discovery Nature Reviews
-
Jensen L, Saric S, Bork P (2006) Literature mining for the biologist: from information retrieval to biological discovery Nature Reviews. Genetics 7: 119-129
-
(2006)
Genetics
, vol.7
, pp. 119-129
-
-
Jensen, L.1
Saric, S.2
Bork, P.3
-
20
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
-
21
-
-
34748888875
-
Using web ontology language to integrate heterogeneous databases in the neurosciences
-
Lam HY, Marenco L, Shepherd GM, Miller PL, Cheung KH (2006) Using web ontology language to integrate heterogeneous databases in the neurosciences. AMIA Annu Symp Proc, pp 464-468
-
(2006)
AMIA Annu Symp Proc
, pp. 464-468
-
-
Lam, H.Y.1
Marenco, L.2
Shepherd, G.M.3
Miller, P.L.4
Cheung, K.H.5
-
22
-
-
41149178971
-
A text-mining perspective on the requirements for electronically annotated abstracts
-
Leitner F, Valencia A (2008) A text-mining perspective on the requirements for electronically annotated abstracts. FEBS Lett 582: 1178-1181
-
(2008)
FEBS Lett
, vol.582
, pp. 1178-1181
-
-
Leitner, F.1
Valencia, A.2
-
23
-
-
0042835767
-
Achieving evolvable web-database bioscience applications using the EAV/CR Framework: Recent advances
-
Marenco L, Tosches N, Crasto C, Shepherd G, Miller PL, Nadkarni PM (2003) Achieving evolvable web-database bioscience applications using the EAV/CR Framework: recent advances. J Am Med Inform Assoc 10: 444-453
-
(2003)
J Am Med Inform Assoc
, vol.10
, pp. 444-453
-
-
Marenco, L.1
Tosches, N.2
Crasto, C.3
Shepherd, G.4
Miller, P.L.5
Nadkarni, P.M.6
-
24
-
-
59349119386
-
Large-scale profiling of protein palmitoylation in mammalian cells
-
Martin B, Cravatt B (2009) Large-scale profiling of protein palmitoylation in mammalian cells. Nat Methods 6: 135-138
-
(2009)
Nat Methods
, vol.6
, pp. 135-138
-
-
Martin, B.1
Cravatt, B.2
-
25
-
-
47149084410
-
Calling on a million minds for community annotation in WikiProteins
-
Mons B, Ashburner M, Chichester C, Mulligen Ev,Weeber M, Dunnen Jd, Ommen Gv, Musen M, Cockerill M, Hermjakob H, Mons A, Packer A, Pacheco R, Lewis S, Berkeley A, Melton W, Barris N, Wales J, Meijssen G, Moeller E et al (2008) Calling on a million minds for community annotation in WikiProteins. Genome Biol 9: R89
-
(2008)
Genome Biol
, vol.9
-
-
Mons, B.1
Ashburner, M.2
Chichester, C.3
Mulligen Evweeber, M.4
Jd, D.5
Gv, O.6
Musen, M.7
Cockerill, M.8
Hermjakob, H.9
Mons, A.10
Packer, A.11
Pacheco, R.12
Lewis, S.13
Berkeley, A.14
Melton, W.15
Barris, N.16
Wales, J.17
Meijssen, G.18
Moeller, E.19
-
26
-
-
0031897042
-
Managing attribute-value clinical trials data using the ACT/DB client-server database system
-
Nadkarni P, Brandt C, Frawley S, Sayward F, Einbinder R, Zelterman D, Schacter L, Miller P (1998) Managing attribute-value clinical trials data using the ACT/DB client-server database system. J Am Med Inform Assoc 5: 139-151
-
(1998)
J Am Med Inform Assoc
, vol.5
, pp. 139-151
-
-
Nadkarni, P.1
Brandt, C.2
Frawley, S.3
Sayward, F.4
Einbinder, R.5
Zelterman, D.6
Schacter, L.7
Miller, P.8
-
27
-
-
39149117418
-
Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models
-
Qian Y, Murphy R (2008) Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models. Bioinformatics 24: 569-576
-
(2008)
Bioinformatics
, vol.24
, pp. 569-576
-
-
Qian, Y.1
Murphy, R.2
-
28
-
-
33845643077
-
A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB
-
Rayner T, Rocca-Serra P, Spellman P, Causton H, Farne A, Holloway E, Irizarry R, Liu J, Maier D, Miller M, Petersen K, Quackenbush J, Sherlock G, Stoeckert C, White J, Whetzel P, Wymore F, Parkinson H, Sarkans U, Ball C et al (2006) A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB. BMC Bioinformatics 7: 486
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 486
-
-
Rayner, T.1
Rocca-Serra, P.2
Spellman, P.3
Causton, H.4
Farne, A.5
Holloway, E.6
Irizarry, R.7
Liu, J.8
Maier, D.9
Miller, M.10
Petersen, K.11
Quackenbush, J.12
Sherlock, G.13
Stoeckert, C.14
White, J.15
Whetzel, P.16
Wymore, F.17
Parkinson, H.18
Sarkans, U.19
Ball, C.20
more..
-
29
-
-
46349104730
-
Life sciences and theweb: A newera for collaboration
-
Sagotsky JA, Zhang L,Wang Z, Martin S, Deisboeck T (2008) Life sciences and theweb: a newera for collaboration. Mol Syst Biol 4: 201
-
(2008)
Mol Syst Biol
, vol.4
, pp. 201
-
-
Sagotsky, J.A.1
Zhang Lwang, Z.2
Martin, S.3
Deisboeck, T.4
-
30
-
-
70349881426
-
Comparison of concept recognizers for building the open biomedical annotator
-
Shah N, Bhatia N, Jonquet C, Rubin D, Chiang A, Musen M (2009) Comparison of concept recognizers for building the open biomedical annotator. BMC Bioinformatics 10(Suppl 9): S14
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.SUPPL. 9
-
-
Shah, N.1
Bhatia, N.2
Jonquet, C.3
Rubin, D.4
Chiang, A.5
Musen, M.6
-
31
-
-
66249092827
-
Adventures in semantic publishing: Exemplar semantic enhancements of a research article
-
Shotton D, Portwin K, Klyne G, Miles A (2009) Adventures in semantic publishing: exemplar semantic enhancements of a research article. PLoS Comput Biol 5: e1000361
-
(2009)
PLoS Comput Biol
, vol.5
-
-
Shotton, D.1
Portwin, K.2
Klyne, G.3
Miles, A.4
-
32
-
-
36448987126
-
Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics
-
Smith A, Cheung K, Krauthammer M, Schultz M, Gerstein M (2007a) Leveraging the structure of the Semantic Web to enhance information retrieval for proteomics. Bioinformatics 23: 3073-3079
-
(2007)
Bioinformatics
, vol.23
, pp. 3073-3079
-
-
Smith, A.1
Cheung, K.2
Krauthammer, M.3
Schultz, M.4
Gerstein, M.5
-
33
-
-
35948989284
-
The OBO foundry: Coordinated evolution of ontologies to support biomedical data integration
-
Smith B, Ashburner M, Rosse C, Bard J, Bug W, Ceusters W, Goldberg LJ, Eilbeck K, Ireland A, Mungall CJ, Consortium O, Leontis N, Rocca-Serra P, Ruttenberg A, Sansone SA, Scheuermann RH, N NS, Whetzel PL, Lewis S (2007b) The OBO foundry: coordinated evolution of ontologies to support biomedical data integration. Nat Biotechnol 25: 1251-1255
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1251-1255
-
-
Smith, B.1
Ashburner, M.2
Rosse, C.3
Bard, J.4
Bug, W.5
Ceusters, W.6
Goldberg, L.J.7
Eilbeck, K.8
Ireland, A.9
Mungall, C.J.10
Consortium, O.11
Leontis, N.12
Rocca-Serra, P.13
Ruttenberg, A.14
Sansone, S.A.15
Scheuermann, R.H.16
Ns, N.17
Whetzel, P.L.18
Lewis, S.19
-
34
-
-
33747884698
-
An ontology of scientific experiments
-
Soldatova L, King R (2006) An ontology of scientific experiments. J R Soc Interface 3: 795-803
-
(2006)
J R Soc Interface
, vol.3
, pp. 795-803
-
-
Soldatova, L.1
King, R.2
-
35
-
-
34249062964
-
The minimum information about a proteomics experiment (MIAPE)
-
Taylor CF, Paton NW, Lilley KS, Binz PA, Julian RK, Jones AR, Zhu W, Apweiler R, Aebersold R, Deutsch EW, Dunn MJ, Heck AJ, Leitner A, Macht M, Mann M, Martens L, Neubert TA, Patterson SD, Ping P, Seymour SL et al (2007) The minimum information about a proteomics experiment (MIAPE). Nat Biotechnol 25: 887-893
-
(2007)
Nat Biotechnol
, vol.25
, pp. 887-893
-
-
Taylor, C.F.1
Paton, N.W.2
Lilley, K.S.3
Binz, P.A.4
Julian, R.K.5
Jones, A.R.6
Zhu, W.7
Apweiler, R.8
Aebersold, R.9
Deutsch, E.W.10
Dunn, M.J.11
Heck, A.J.12
Leitner, A.13
MacHt, M.14
Mann, M.15
Martens, L.16
Neubert, T.A.17
Patterson, S.D.18
Ping, P.19
Seymour, S.L.20
more..
-
38
-
-
33748049446
-
Development of FuGO: An ontology for functional genomics investigations
-
Whetzel P, Brinkman R, Causton H, Fan L, Field D, Fostel J, Fragoso G, Gray T, Heiskanen M, Hernandez-Boussard T, Morrison N, Parkinson H, Rocca-Serra P, Sansone S-A, Smith DSB, Stevens R, Stoeckert C, Taylor C, White J, Wood A (2006) Development of FuGO: an ontology for functional genomics investigations. OMICS 10: 199-204
-
(2006)
OMICS
, vol.10
, pp. 199-204
-
-
Whetzel, P.1
Brinkman, R.2
Causton, H.3
Fan, L.4
Field, D.5
Fostel, J.6
Fragoso, G.7
Gray, T.8
Heiskanen, M.9
Hernandez-Boussard, T.10
Morrison, N.11
Parkinson, H.12
Rocca-Serra, P.13
Sansone, S.-A.14
Dsb, S.15
Stevens, R.16
Stoeckert, C.17
Taylor, C.18
White, J.19
Wood, A.20
more..
-
39
-
-
0028794516
-
Construction of a set of convenient Saccharomyces cerevisiaestrains that are isogenic to S228C
-
Winston F, Dollard C, Ricupero-Hovasse SL (1995) Construction of a set of convenient Saccharomyces cerevisiaestrains that are isogenic to S228C. Yeast 11: 53-55
-
(1995)
Yeast
, vol.11
, pp. 53-55
-
-
Winston, F.1
Dollard, C.2
Ricupero-Hovasse, S.L.3
|