iHOPerator: User-scripting a personalized bioinformatics Web, starting with the iHOP website

BMC Bioinformatics

Volumn 7, Issue , 2006, Pages

  Good, Benjamin M ^a   Kawas, Edward A ^a   Kuo, Byron ^a   Wilkinson, Mark D ^a  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ADDITIONAL DATUM; BIOCHEMICAL PATHWAY; BIOLOGICAL INFORMATION; BIOLOGICAL SETTINGS; LIFE SCIENTISTS; MOZILLA FIREFOX; WEB EXPERIENCES; WEB TECHNOLOGIES;

BIOINFORMATICS; DATA VISUALIZATION; GENES; WEBSITES;

WEB BROWSERS;

ARTICLE; AUTOMATION; BIOCHEMISTRY; BIOINFORMATICS; COMPUTER PROGRAM; GENE; INFORMATION PROCESSING; INFORMATION TECHNOLOGY; INTERNET; PROTEIN ANALYSIS; BIOLOGY; COMPUTER INTERFACE; FACTUAL DATABASE; PROCEDURES; TRENDS;

COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; INTERNET; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 33846641257     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-7-534     Document Type: Article

References (23)

1. Bolin M End-User Programming for the Web Masters Thesis in Electrical Engineering and Computer Science Boston: Massachusets Institute of Technology 2005
2. Userscripts.org - Universal Repository http://userscripts.org/
3. Hoffmann R Krallinger M Andres E Tamames J Blaschke C Valencia A Text mining for metabolic pathways, signaling cascades, and protein networks Sci STKE 2005 2005 283 pe21 10.1126/stke.2832005pe21 15886388
4. Hoffmann R Valencia A Implementing the iHOP concept for navigation of biomedical literature Bioinformatics 2005 21 Suppl 2 ii252 ii258 10.1093/ bioinformatics/bti1142 16204114
5. Hoffmann R Valencia A A gene network for navigating the literature Nat Genet 2004 36(7) 664 10.1038/ng0704-664 15226743
6. iHOP - Information Hyperlinked over Proteins http://www.ihop-net.org/ UniPub/iHOP/
7. Tag cloud - Wikipedia, the free encyclopedia http://en.wikipedia.org/ wiki/Tag_cloud
8. Flickr http://www.flickr.com/explore/
9. Connotea: Free online reference management for clinicians and scientists http://www.connotea.org/
10. Del.icio.us http://del.icio.us/tag/
11. Entrez PubMed http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
12. Kanehisa M Goto S Kawashima S Okuno Y Hattori M The KEGG resource for deciphering the genome Nucleic Acids Res 2004 32 Database issue D277-80 308797 14681412 10.1093/nar/gkh063
13. Wilkinson MD Links M BioMOBY: An open source biological web services proposal Briefings in bioinformatics 2002 3(4) 331-341 10.1093/bib/ 3.4.331 12511062
14. GBrowse: MOBY-S Web Service Browser http://mobycentral.icapture.ubc.ca/ cgi-bin/gbrowse_moby
15. A GreaseMonkey Script to Display SVG TreeMaps of Tags in Connotea http://www.urbigene.com/gmconnoteasvg/
16. CiteULike: A free online service to organize your academic papers http://www.citeulike.org/
17. Treemaps for space-constrained visualization of hierarchies http://www.cs.umd.edu/hcil/treemap-history/
18. Stein L Creating a bioinformatics nation Nature 2002 417(6885) 119-120 10.1038/417119a 12000935
19. Berners-Lee T Hendler J Lassila O The Semantic Web Scientific American 2001 284(5) 34-43
20. W3C RDF Primer http://www.w3.org/TR/rdf-primer/
21. OWL Web Ontology Language Overview http://www.w3.org/TR/owl-features/
22. Quan D Karger D How to make a semantic web browser: New York, NY, USA. ACM Press 2004 255-265
23. Good BM Wilkinson MD The Life Sciences Semantic Web is Full of Creeps! Brief Bioinform 2006 16899496