메뉴 건너뛰기




Volumn 5, Issue 6, 2010, Pages

DMSO and betaine greatly improve amplification of GC-rich constructs in de novo synthesis

Author keywords

[No Author keywords available]

Indexed keywords

B RAF KINASE; BETAINE; DIMETHYL SULFOXIDE; LIGASE; SOMATOMEDIN B RECEPTOR;

EID: 77956195631     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0011024     Document Type: Article
Times cited : (114)

References (44)
  • 1
    • 0018741957 scopus 로고
    • Total synthesis of a gene
    • (New York, N Y)
    • Khorana HG (1979) Total synthesis of a gene. Science (New York, N Y) 203: 614-625.
    • (1979) Science , vol.203 , pp. 614-625
    • Khorana, H.G.1
  • 2
    • 33645769763 scopus 로고    scopus 로고
    • Allotopic expression of a mitochondrial alternative oxidase confers cyanide resistance to human cell respiration
    • Hakkaart GA, Dassa EP, Jacobs HT, Rustin P (2006) Allotopic expression of a mitochondrial alternative oxidase confers cyanide resistance to human cell respiration. EMBO reports 7: 341-345.
    • (2006) EMBO Reports , vol.7 , pp. 341-345
    • Hakkaart, G.A.1    Dassa, E.P.2    Jacobs, H.T.3    Rustin, P.4
  • 3
    • 33846058307 scopus 로고    scopus 로고
    • Gene therapy of the other genome: The challenges of treating mitochondrial DNA defects
    • D'Souza GG, Boddapati SV, Weissig V (2007) Gene therapy of the other genome: the challenges of treating mitochondrial DNA defects. Pharm Res 24: 228-238.
    • (2007) Pharm Res , vol.24 , pp. 228-238
    • D'souza, G.G.1    Boddapati, S.V.2    Weissig, V.3
  • 4
    • 33745116191 scopus 로고    scopus 로고
    • Another side of genomics: Synthetic biology as a means for the exploitation of whole-genome sequence information
    • Stahler P, Beier M, Gao X, Hoheisel JD (2006) Another side of genomics: synthetic biology as a means for the exploitation of whole-genome sequence information. Journal of biotechnology 124: 206-212.
    • (2006) Journal of Biotechnology , vol.124 , pp. 206-212
    • Stahler, P.1    Beier, M.2    Gao, X.3    Hoheisel, J.D.4
  • 6
    • 39449112551 scopus 로고    scopus 로고
    • Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome
    • (New York, N Y)
    • Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, et al. (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science (New York, N Y) 319: 1215-1220.
    • (2008) Science , vol.319 , pp. 1215-1220
    • Gibson, D.G.1    Benders, G.A.2    Andrews-Pfannkoch, C.3    Denisova, E.A.4    Baden-Tillson, H.5
  • 9
    • 34248199933 scopus 로고    scopus 로고
    • Amplification of GC-rich genes by following a combination strategy of primer design, enhancers and modified PCR cycle conditions
    • Sahdev S, Saini S, Tiwari P, Saxena S, Singh Saini K (2007) Amplification of GC-rich genes by following a combination strategy of primer design, enhancers and modified PCR cycle conditions. Mol Cell Probes 21: 303-307.
    • (2007) Mol Cell Probes , vol.21 , pp. 303-307
    • Sahdev, S.1    Saini, S.2    Tiwari, P.3    Saxena, S.4    Singh Saini, K.5
  • 10
    • 0032528128 scopus 로고    scopus 로고
    • Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR
    • McDowell DG, Burns NA, Parkes HC (1998) Localised sequence regions possessing high melting temperatures prevent the amplification of a DNA mimic in competitive PCR. Nucleic Acids Res 26: 3340-3347.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3340-3347
    • McDowell, D.G.1    Burns, N.A.2    Parkes, H.C.3
  • 11
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker M (2003) Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 31: 3406-3415.
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 12
    • 19644370646 scopus 로고    scopus 로고
    • GeMS: An advanced software package for designing synthetic genes
    • Jayaraj S, Reid R, Santi DV (2005) GeMS: an advanced software package for designing synthetic genes. Nucleic Acids Res 33: 3011-3016.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3011-3016
    • Jayaraj, S.1    Reid, R.2    Santi, D.V.3
  • 13
    • 0037095730 scopus 로고    scopus 로고
    • DNAWorks: An automated method for designing oligonucleotides for PCR-based gene synthesis
    • Hoover DM, Lubkowski J (2002) DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis. Nucleic Acids Res 30: e43.
    • (2002) Nucleic Acids Res , vol.e43 , pp. 30
    • Hoover, D.M.1    Lubkowski, J.2
  • 15
    • 0028874391 scopus 로고
    • CGG repeats associated with DNA instability and chromosome fragility form structures that block DNA synthesis in vitro
    • Usdin K, Woodford KJ (1995) CGG repeats associated with DNA instability and chromosome fragility form structures that block DNA synthesis in vitro. Nucleic acids research 23: 4202-4209.
    • (1995) Nucleic Acids Research , vol.23 , pp. 4202-4209
    • Usdin, K.1    Woodford, K.J.2
  • 16
    • 0028914560 scopus 로고
    • Unstable triplet repeat sequences: A source of cancer mutations?
    • (Dayton, Ohio)
    • Panzer S, Kuhl DP, Caskey CT (1995) Unstable triplet repeat sequences: a source of cancer mutations? Stem cells (Dayton, Ohio) 13: 146-157.
    • (1995) Stem Cells , vol.13 , pp. 146-157
    • Panzer, S.1    Kuhl, D.P.2    Caskey, C.T.3
  • 17
    • 0035155572 scopus 로고    scopus 로고
    • Reduction of wobble-position GC bases in Corynebacteria genes and enhancement of PCR and heterologous expression
    • Sanli G, Blaber SI, Blaber M (2001) Reduction of wobble-position GC bases in Corynebacteria genes and enhancement of PCR and heterologous expression. Journal of molecular microbiology and biotechnology 3: 123-126.
    • (2001) Journal of Molecular Microbiology and Biotechnology , vol.3 , pp. 123-126
    • Sanli, G.1    Blaber, S.I.2    Blaber, M.3
  • 18
    • 7244258790 scopus 로고    scopus 로고
    • Single nucleotide polymorphism in the 5' tandem repeat sequences of thymidylate synthase gene predicts for response to fluorouracil-based chemotherapy in advanced colorectal cancer patients
    • Marcuello E, Altes A, del Rio E, Cesar A, Menoyo A, et al. (2004) Single nucleotide polymorphism in the 5' tandem repeat sequences of thymidylate synthase gene predicts for response to fluorouracil-based chemotherapy in advanced colorectal cancer patients. International journal of cancer Journal international du cancer 112: 733-737.
    • (2004) International Journal of Cancer Journal International Du Cancer , vol.112 , pp. 733-737
    • Marcuello, E.1    Altes, A.2    del Rio, E.3    Cesar, A.4    Menoyo, A.5
  • 23
    • 0028196747 scopus 로고
    • Denaturants or cosolvents improve the specificity of PCR amplification of a G + C-rich DNA using genetically engineered DNA polymerases
    • Varadaraj K, Skinner DM (1994) Denaturants or cosolvents improve the specificity of PCR amplification of a G + C-rich DNA using genetically engineered DNA polymerases. Gene 140: 1-5.
    • (1994) Gene , vol.140 , pp. 1-5
    • Varadaraj, K.1    Skinner, D.M.2
  • 24
    • 0024600983 scopus 로고
    • An improved method for directly sequencing PCR amplified material using dimethyl sulphoxide
    • Winship PR (1989) An improved method for directly sequencing PCR amplified material using dimethyl sulphoxide. Nucleic acids research 17: 1266.
    • (1989) Nucleic Acids Research , vol.17 , pp. 1266
    • Winship, P.R.1
  • 26
    • 0027386592 scopus 로고
    • Betaine can eliminate the base pair composition dependence of DNA melting
    • Rees WA, Yager TD, Korte J, von Hippel PH (1993) Betaine can eliminate the base pair composition dependence of DNA melting. Biochemistry 32: 137-144.
    • (1993) Biochemistry , vol.32 , pp. 137-144
    • Rees, W.A.1    Yager, T.D.2    Korte, J.3    von Hippel, P.H.4
  • 27
    • 37149046822 scopus 로고    scopus 로고
    • The 3' UTR IGF2R-A2/B2 variant is associated with increased tumor growth and advanced stages in non-small cell lung cancer
    • Kotsinas A, Evangelou K, Sideridou M, Kotzamanis G, Constantinides C, et al. (2008) The 3' UTR IGF2R-A2/B2 variant is associated with increased tumor growth and advanced stages in non-small cell lung cancer. Cancer letters 259: 177-185.
    • (2008) Cancer Letters , vol.259 , pp. 177-185
    • Kotsinas, A.1    Evangelou, K.2    Sideridou, M.3    Kotzamanis, G.4    Constantinides, C.5
  • 28
    • 0037439959 scopus 로고    scopus 로고
    • Insulin-like growth factor II receptor gene-167 genotype increases the risk of oral squamous cell carcinoma in humans
    • Zavras AI, Pitiphat W, Wu T, Cartsos V, Lam A, et al. (2003) Insulin-like growth factor II receptor gene-167 genotype increases the risk of oral squamous cell carcinoma in humans. Cancer research 63: 296-297.
    • (2003) Cancer Research , vol.63 , pp. 296-297
    • Zavras, A.I.1    Pitiphat, W.2    Wu, T.3    Cartsos, V.4    Lam, A.5
  • 31
    • 2942625415 scopus 로고    scopus 로고
    • Polymorphisms of the BRAF gene predispose males to malignant melanoma
    • Meyer P, Sergi C, Garbe C (2003) Polymorphisms of the BRAF gene predispose males to malignant melanoma. J Carcinog 2: 7.
    • (2003) J Carcinog , vol.2 , pp. 7
    • Meyer, P.1    Sergi, C.2    Garbe, C.3
  • 32
    • 0028784138 scopus 로고
    • Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides
    • Stemmer WP, Crameri A, Ha KD, Brennan TM, Heyneker HL (1995) Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene 164: 49-53.
    • (1995) Gene , vol.164 , pp. 49-53
    • Stemmer, W.P.1    Crameri, A.2    Ha, K.D.3    Brennan, T.M.4    Heyneker, H.L.5
  • 33
    • 0032499868 scopus 로고    scopus 로고
    • Gene synthesis by a LCR-based approach: High-level production of leptin-L54 using synthetic gene in Escherichia coli
    • Au LC, Yang FY, Yang WJ, Lo SH, Kao CF (1998) Gene synthesis by a LCR-based approach: high-level production of leptin-L54 using synthetic gene in Escherichia coli. Biochemical and biophysical research communications 248: 200-203.
    • (1998) Biochemical and Biophysical Research Communications , vol.248 , pp. 200-203
    • Au, L.C.1    Yang, F.Y.2    Yang, W.J.3    Lo, S.H.4    Kao, C.F.5
  • 34
    • 0023251413 scopus 로고
    • Insulin-like growth factor II receptor as a multifunctional binding protein
    • Morgan DO, Edman JC, Standring DN, Fried VA, Smith MC, et al. (1987) Insulin-like growth factor II receptor as a multifunctional binding protein. Nature 329: 301-307.
    • (1987) Nature , vol.329 , pp. 301-307
    • Morgan, D.O.1    Edman, J.C.2    Standring, D.N.3    Fried, V.A.4    Smith, M.C.5
  • 36
    • 0022887256 scopus 로고
    • Processivity and kinetics of the reaction of exonuclease I from Escherichia coli with polydeoxyribonucleotides
    • Brody RS, Doherty KG, Zimmerman PD (1986) Processivity and kinetics of the reaction of exonuclease I from Escherichia coli with polydeoxyribonucleotides. The Journal of biological chemistry 261: 7136-7143.
    • (1986) The Journal of Biological Chemistry , vol.261 , pp. 7136-7143
    • Brody, R.S.1    Doherty, K.G.2    Zimmerman, P.D.3
  • 38
    • 0035018021 scopus 로고    scopus 로고
    • G-quadruplex DNA structures-variations on a theme
    • Simonsson T (2001) G-quadruplex DNA structures-variations on a theme. Biol Chem 382: 621-628.
    • (2001) Biol Chem , vol.382 , pp. 621-628
    • Simonsson, T.1
  • 39
    • 0025609514 scopus 로고
    • Formamide can dramatically improve the specificity of PCR
    • Sarkar G, Kapelner S, Sommer SS (1990) Formamide can dramatically improve the specificity of PCR. Nucleic acids research 18: 7465.
    • (1990) Nucleic Acids Research , vol.18 , pp. 7465
    • Sarkar, G.1    Kapelner, S.2    Sommer, S.S.3
  • 40
    • 0025259663 scopus 로고
    • Improvement of PCR amplified DNA sequencing with the aid of detergents
    • Bachmann B, Luke W, Hunsmann G (1990) Improvement of PCR amplified DNA sequencing with the aid of detergents. Nucleic acids research 18: 1309.
    • (1990) Nucleic Acids Research , vol.18 , pp. 1309
    • Bachmann, B.1    Luke, W.2    Hunsmann, G.3
  • 41
    • 3042614052 scopus 로고    scopus 로고
    • Trehalose is a potent PCR enhancer: Lowering of DNA melting temperature and thermal stabilization of taq polymerase by the disaccharide trehalose
    • Spiess A-N, Mueller N, Ivell R (2004) Trehalose is a potent PCR enhancer: lowering of DNA melting temperature and thermal stabilization of taq polymerase by the disaccharide trehalose. Clinical Chemistry 50: 1256-1259.
    • (2004) Clinical Chemistry , vol.50 , pp. 1256-1259
    • Spiess, A.-N.1    Mueller, N.2    Ivell, R.3
  • 42
    • 0026662508 scopus 로고
    • Minimizing deletion mutagenesis artifact during Taq DNA polymerase PCR by
    • Chou Q (1992) Minimizing deletion mutagenesis artifact during Taq DNA polymerase PCR by E. coli SSB. Nucleic acids research 20: 4371.
    • (1992) E. Coli SSB. Nucleic Acids Research , vol.20 , pp. 4371
    • Chou, Q.1
  • 43
    • 0023700869 scopus 로고
    • Structure-independent DNA amplification by PCR using 7-deaza-2'-deoxyguanosine
    • McConlogue L, Brow MA, Innis MA (1988) Structure-independent DNA amplification by PCR using 7-deaza-2'-deoxyguanosine. Nucleic acids research 16: 9869.
    • (1988) Nucleic Acids Research , vol.16 , pp. 9869
    • McConlogue, L.1    Brow, M.A.2    Innis, M.A.3
  • 44
    • 23444436509 scopus 로고    scopus 로고
    • Optimal conditions and specific characteristics of Vent exo- DNA polymerase in ligation-mediated polymerase chain reaction protocols
    • Vigneault F, Drouin R (2005) Optimal conditions and specific characteristics of Vent exo- DNA polymerase in ligation-mediated polymerase chain reaction protocols. Biochemistry and cell biology 83: 147-165.
    • (2005) Biochemistry and Cell Biology , vol.83 , pp. 147-165
    • Vigneault, F.1    Drouin, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.